HEADER LIGASE 15-JAN-19 6NO4 TITLE ADP BOUND TO L227BF MUTANT ATP-GRASP FOLD OF BLASTOCYSTIS HOMINIS TITLE 2 SUCCINYL-COA SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 16-253; COMPND 5 SYNONYM: SUCCINYL-COA SYNTHETASE BETA CHAIN,SCS-BETA; COMPND 6 EC: 6.2.1.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLASTOCYSTIS SP. SUBTYPE 1 (STRAIN ATCC 50177 / SOURCE 3 NANDII); SOURCE 4 ORGANISM_TAXID: 478820; SOURCE 5 STRAIN: ATCC 50177 / NANDII; SOURCE 6 GENE: SCSB; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COMPLEX, MUTANT, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HUANG,M.E.FRASER REVDAT 3 08-JAN-20 6NO4 1 REMARK REVDAT 2 13-NOV-19 6NO4 1 JRNL REVDAT 1 17-JUL-19 6NO4 0 JRNL AUTH J.HUANG,V.H.NGUYEN,K.A.HAMBLIN,R.MAYTUM,M.VAN DER GIEZEN, JRNL AUTH 2 M.E.FRASER JRNL TITL ATP-SPECIFICITY OF SUCCINYL-COA SYNTHETASE FROM BLASTOCYSTIS JRNL TITL 2 HOMINIS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 647 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31282474 JRNL DOI 10.1107/S2059798319007976 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3311 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 68.9052 - 4.6591 1.00 2912 142 0.1967 0.2082 REMARK 3 2 4.6591 - 3.6981 1.00 2778 139 0.1796 0.2466 REMARK 3 3 3.6981 - 3.2306 1.00 2737 136 0.2213 0.3003 REMARK 3 4 3.2306 - 2.9353 1.00 2693 152 0.2337 0.2861 REMARK 3 5 2.9353 - 2.7249 0.99 2684 147 0.2539 0.2892 REMARK 3 6 2.7249 - 2.5642 0.99 2669 140 0.2527 0.2681 REMARK 3 7 2.5642 - 2.4358 0.99 2682 142 0.2703 0.2993 REMARK 3 8 2.4358 - 2.3297 0.99 2656 137 0.2900 0.3188 REMARK 3 9 2.3297 - 2.2400 0.99 2670 145 0.3134 0.3434 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:19) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6324 44.6053 2.6189 REMARK 3 T TENSOR REMARK 3 T11: 1.0433 T22: 1.2070 REMARK 3 T33: 1.1301 T12: -0.0220 REMARK 3 T13: 0.0107 T23: 0.1990 REMARK 3 L TENSOR REMARK 3 L11: 0.2655 L22: 0.2045 REMARK 3 L33: 0.4693 L12: 0.1457 REMARK 3 L13: 0.4320 L23: 0.1375 REMARK 3 S TENSOR REMARK 3 S11: -0.5079 S12: 0.8925 S13: 1.3562 REMARK 3 S21: 0.0736 S22: 0.4201 S23: -0.4127 REMARK 3 S31: -1.1014 S32: -1.0178 S33: -0.0100 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 20:114) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2193 37.3646 -14.3149 REMARK 3 T TENSOR REMARK 3 T11: 0.5265 T22: 0.6173 REMARK 3 T33: 0.5969 T12: -0.0277 REMARK 3 T13: 0.0222 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 1.1068 L22: 3.1066 REMARK 3 L33: 1.9312 L12: -0.5608 REMARK 3 L13: -0.6267 L23: -0.3710 REMARK 3 S TENSOR REMARK 3 S11: 0.2482 S12: 0.1137 S13: 0.3745 REMARK 3 S21: 0.0581 S22: -0.0955 S23: 0.4824 REMARK 3 S31: -0.0654 S32: -0.5638 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 115:233) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4866 31.7333 10.5498 REMARK 3 T TENSOR REMARK 3 T11: 0.5851 T22: 0.6414 REMARK 3 T33: 0.4913 T12: -0.1142 REMARK 3 T13: -0.0203 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 2.1562 L22: 2.2762 REMARK 3 L33: 3.9272 L12: 1.0919 REMARK 3 L13: -1.0600 L23: -0.1061 REMARK 3 S TENSOR REMARK 3 S11: 0.1119 S12: -0.4772 S13: 0.0709 REMARK 3 S21: 0.2791 S22: -0.1448 S23: 0.1616 REMARK 3 S31: -0.3248 S32: 0.2828 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 3:20) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2489 33.7286 -28.9241 REMARK 3 T TENSOR REMARK 3 T11: 0.9505 T22: 0.6612 REMARK 3 T33: 0.6221 T12: 0.2392 REMARK 3 T13: 0.1843 T23: -0.1434 REMARK 3 L TENSOR REMARK 3 L11: 0.9453 L22: 3.3747 REMARK 3 L33: 4.0788 L12: 0.7338 REMARK 3 L13: 0.4973 L23: -2.5777 REMARK 3 S TENSOR REMARK 3 S11: 0.8554 S12: 0.6734 S13: -0.2405 REMARK 3 S21: 0.7709 S22: 0.0329 S23: 0.0203 REMARK 3 S31: -2.4123 S32: 0.1497 S33: 0.9488 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 21:113) REMARK 3 ORIGIN FOR THE GROUP (A): 48.0952 37.0093 -10.5444 REMARK 3 T TENSOR REMARK 3 T11: 0.5085 T22: 0.4718 REMARK 3 T33: 0.5329 T12: -0.0203 REMARK 3 T13: -0.0199 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 1.5158 L22: 1.6222 REMARK 3 L33: 1.5658 L12: -0.1986 REMARK 3 L13: -0.7734 L23: -0.4370 REMARK 3 S TENSOR REMARK 3 S11: 0.3052 S12: -0.1672 S13: 0.2935 REMARK 3 S21: 0.2428 S22: -0.2086 S23: -0.1428 REMARK 3 S31: -0.0830 S32: 0.1941 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 114:233) REMARK 3 ORIGIN FOR THE GROUP (A): 44.6948 19.3971 -32.2438 REMARK 3 T TENSOR REMARK 3 T11: 0.5930 T22: 0.6581 REMARK 3 T33: 0.6490 T12: 0.0082 REMARK 3 T13: 0.0211 T23: -0.2119 REMARK 3 L TENSOR REMARK 3 L11: 1.2212 L22: -0.8500 REMARK 3 L33: 4.8098 L12: -1.3739 REMARK 3 L13: -1.6616 L23: 0.2261 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.6807 S13: -0.5014 REMARK 3 S21: 0.0823 S22: -0.3011 S23: 0.1377 REMARK 3 S31: 0.1782 S32: -0.3458 S33: -0.0253 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 79.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.78800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% W/V PEG3350, 100 MM MES, PH 6.0, REMARK 280 180 MM AMMONIUM TARTRATE, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.62600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.89350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.62600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.89350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 234 REMARK 465 LYS A 235 REMARK 465 ASP A 236 REMARK 465 ALA A 237 REMARK 465 ALA A 238 REMARK 465 PHE A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 GLU A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 LEU B 54 REMARK 465 ALA B 55 REMARK 465 GLY B 56 REMARK 465 GLY B 57 REMARK 465 ARG B 58 REMARK 465 GLY B 59 REMARK 465 LYS B 60 REMARK 465 GLY B 61 REMARK 465 HIS B 62 REMARK 465 TRP B 63 REMARK 465 GLU B 64 REMARK 465 HIS B 65 REMARK 465 GLY B 66 REMARK 465 MET B 67 REMARK 465 GLN B 68 REMARK 465 GLY B 69 REMARK 465 LEU B 92 REMARK 465 ILE B 93 REMARK 465 THR B 94 REMARK 465 LYS B 95 REMARK 465 GLN B 96 REMARK 465 THR B 97 REMARK 465 GLY B 98 REMARK 465 ALA B 99 REMARK 465 LYS B 100 REMARK 465 GLY B 101 REMARK 465 ILE B 102 REMARK 465 ASP B 234 REMARK 465 LYS B 235 REMARK 465 ASP B 236 REMARK 465 ALA B 237 REMARK 465 ALA B 238 REMARK 465 PHE B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 GLU B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 216 O HOH A 401 2.05 REMARK 500 O HOH B 312 O HOH B 314 2.06 REMARK 500 OE2 GLU A 118 O2' ADP A 301 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 429 O HOH B 331 2665 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 99 13.37 -158.15 REMARK 500 ASP A 220 22.84 80.14 REMARK 500 GLN B 139 67.87 -100.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD1 REMARK 620 2 ASP A 220 OD2 61.1 REMARK 620 3 ASP B 220 OD1 150.7 136.7 REMARK 620 4 HOH A 401 O 111.6 89.7 93.6 REMARK 620 5 HOH B 317 O 88.9 141.7 81.0 79.3 REMARK 620 6 HOH A 404 O 70.0 110.7 80.8 155.7 76.5 REMARK 620 7 HOH B 301 O 104.0 71.5 71.1 124.2 143.7 76.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 DBREF 6NO4 A 2 239 UNP B3FHP0 SUCB_BLAHN 16 253 DBREF 6NO4 B 2 239 UNP B3FHP0 SUCB_BLAHN 16 253 SEQADV 6NO4 MET A 1 UNP B3FHP0 INITIATING METHIONINE SEQADV 6NO4 PHE A 227 UNP B3FHP0 LEU 241 ENGINEERED MUTATION SEQADV 6NO4 GLY A 240 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 LEU A 241 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 GLU A 242 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS A 243 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS A 244 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS A 245 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS A 246 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS A 247 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS A 248 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS A 249 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS A 250 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 MET B 1 UNP B3FHP0 INITIATING METHIONINE SEQADV 6NO4 PHE B 227 UNP B3FHP0 LEU 241 ENGINEERED MUTATION SEQADV 6NO4 GLY B 240 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 LEU B 241 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 GLU B 242 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS B 243 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS B 244 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS B 245 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS B 246 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS B 247 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS B 248 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS B 249 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO4 HIS B 250 UNP B3FHP0 EXPRESSION TAG SEQRES 1 A 250 MET ASN ILE HIS GLU TRP GLN SER LYS GLN LEU ILE GLN SEQRES 2 A 250 LYS TYR GLY GLY ARG ALA GLN SER GLY GLU VAL ALA PHE SEQRES 3 A 250 SER PRO GLU ARG SER ARG ASP ILE ALA LYS LYS LEU TRP SEQRES 4 A 250 ASN GLN PHE PRO GLY CYS LYS PHE VAL VAL LYS ALA GLN SEQRES 5 A 250 VAL LEU ALA GLY GLY ARG GLY LYS GLY HIS TRP GLU HIS SEQRES 6 A 250 GLY MET GLN GLY GLY VAL LYS LEU ALA LYS THR PRO GLU SEQRES 7 A 250 GLU VAL TYR GLU ILE ALA ASN GLU MET ILE GLY HIS LYS SEQRES 8 A 250 LEU ILE THR LYS GLN THR GLY ALA LYS GLY ILE ASN CYS SEQRES 9 A 250 ASN LYS VAL MET VAL CYS GLY ALA VAL LYS ILE LEU LYS SEQRES 10 A 250 GLU PHE TYR LEU SER ILE LEU LEU ASP ARG ALA MET GLY SEQRES 11 A 250 CYS PRO VAL ILE ILE ALA THR SER GLN GLY GLY MET GLY SEQRES 12 A 250 ILE GLU GLU VAL ALA GLN LYS CYS PRO GLU CYS LEU PHE SEQRES 13 A 250 LYS VAL PRO ILE SER VAL LYS ASN GLY PRO THR ASN GLU SEQRES 14 A 250 GLN LEU VAL LYS LEU ALA LYS ASP LEU GLY LEU GLU GLY SEQRES 15 A 250 ASP LEU VAL GLN ASP CYS VAL ASP ASN VAL LYS ALA LEU SEQRES 16 A 250 TYR GLN VAL PHE ASP LYS CYS ASP SER THR MET VAL GLU SEQRES 17 A 250 ILE ASN PRO LEU GLY VAL ILE GLU THR PRO THR ASP GLU SEQRES 18 A 250 LYS VAL ILE CYS CYS PHE ASP ALA LYS ILE ALA PHE ASP SEQRES 19 A 250 LYS ASP ALA ALA PHE GLY LEU GLU HIS HIS HIS HIS HIS SEQRES 20 A 250 HIS HIS HIS SEQRES 1 B 250 MET ASN ILE HIS GLU TRP GLN SER LYS GLN LEU ILE GLN SEQRES 2 B 250 LYS TYR GLY GLY ARG ALA GLN SER GLY GLU VAL ALA PHE SEQRES 3 B 250 SER PRO GLU ARG SER ARG ASP ILE ALA LYS LYS LEU TRP SEQRES 4 B 250 ASN GLN PHE PRO GLY CYS LYS PHE VAL VAL LYS ALA GLN SEQRES 5 B 250 VAL LEU ALA GLY GLY ARG GLY LYS GLY HIS TRP GLU HIS SEQRES 6 B 250 GLY MET GLN GLY GLY VAL LYS LEU ALA LYS THR PRO GLU SEQRES 7 B 250 GLU VAL TYR GLU ILE ALA ASN GLU MET ILE GLY HIS LYS SEQRES 8 B 250 LEU ILE THR LYS GLN THR GLY ALA LYS GLY ILE ASN CYS SEQRES 9 B 250 ASN LYS VAL MET VAL CYS GLY ALA VAL LYS ILE LEU LYS SEQRES 10 B 250 GLU PHE TYR LEU SER ILE LEU LEU ASP ARG ALA MET GLY SEQRES 11 B 250 CYS PRO VAL ILE ILE ALA THR SER GLN GLY GLY MET GLY SEQRES 12 B 250 ILE GLU GLU VAL ALA GLN LYS CYS PRO GLU CYS LEU PHE SEQRES 13 B 250 LYS VAL PRO ILE SER VAL LYS ASN GLY PRO THR ASN GLU SEQRES 14 B 250 GLN LEU VAL LYS LEU ALA LYS ASP LEU GLY LEU GLU GLY SEQRES 15 B 250 ASP LEU VAL GLN ASP CYS VAL ASP ASN VAL LYS ALA LEU SEQRES 16 B 250 TYR GLN VAL PHE ASP LYS CYS ASP SER THR MET VAL GLU SEQRES 17 B 250 ILE ASN PRO LEU GLY VAL ILE GLU THR PRO THR ASP GLU SEQRES 18 B 250 LYS VAL ILE CYS CYS PHE ASP ALA LYS ILE ALA PHE ASP SEQRES 19 B 250 LYS ASP ALA ALA PHE GLY LEU GLU HIS HIS HIS HIS HIS SEQRES 20 B 250 HIS HIS HIS HET ADP A 301 42 HET MG A 302 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG MG 2+ FORMUL 5 HOH *65(H2 O) HELIX 1 AA1 ASN A 2 TYR A 15 1 14 HELIX 2 AA2 SER A 27 ASN A 40 1 14 HELIX 3 AA3 THR A 76 ILE A 88 1 13 HELIX 4 AA4 GLY A 143 CYS A 151 1 9 HELIX 5 AA5 THR A 167 LEU A 178 1 12 HELIX 6 AA6 ASP A 183 CYS A 202 1 20 HELIX 7 AA7 HIS B 4 TYR B 15 1 12 HELIX 8 AA8 SER B 27 ASN B 40 1 14 HELIX 9 AA9 THR B 76 ILE B 88 1 13 HELIX 10 AB1 GLY B 143 CYS B 151 1 9 HELIX 11 AB2 PRO B 152 LEU B 155 5 4 HELIX 12 AB3 THR B 167 LEU B 178 1 12 HELIX 13 AB4 GLY B 182 CYS B 202 1 21 SHEET 1 AA1 6 ALA A 19 GLN A 20 0 SHEET 2 AA1 6 LYS A 222 PHE A 227 1 O CYS A 226 N GLN A 20 SHEET 3 AA1 6 MET A 206 GLU A 216 -1 N ILE A 215 O VAL A 223 SHEET 4 AA1 6 LYS A 114 ASP A 126 -1 N LEU A 116 O VAL A 214 SHEET 5 AA1 6 CYS A 131 THR A 137 -1 O ILE A 135 N SER A 122 SHEET 6 AA1 6 PHE A 156 PRO A 159 -1 O PHE A 156 N ALA A 136 SHEET 1 AA2 4 ALA A 19 GLN A 20 0 SHEET 2 AA2 4 LYS A 222 PHE A 227 1 O CYS A 226 N GLN A 20 SHEET 3 AA2 4 MET A 206 GLU A 216 -1 N ILE A 215 O VAL A 223 SHEET 4 AA2 4 LYS A 230 ALA A 232 -1 O LYS A 230 N GLU A 208 SHEET 1 AA3 4 GLU A 23 ALA A 25 0 SHEET 2 AA3 4 VAL A 107 GLY A 111 -1 O VAL A 109 N GLU A 23 SHEET 3 AA3 4 PHE A 47 ALA A 51 -1 N VAL A 48 O CYS A 110 SHEET 4 AA3 4 VAL A 71 ALA A 74 -1 O ALA A 74 N PHE A 47 SHEET 1 AA4 3 HIS A 62 TRP A 63 0 SHEET 2 AA4 3 HIS A 90 ILE A 93 -1 O ILE A 93 N HIS A 62 SHEET 3 AA4 3 ILE A 102 CYS A 104 -1 O ILE A 102 N LEU A 92 SHEET 1 AA5 4 GLU B 23 ALA B 25 0 SHEET 2 AA5 4 LYS B 106 GLY B 111 -1 O VAL B 109 N GLU B 23 SHEET 3 AA5 4 PHE B 47 GLN B 52 -1 N VAL B 48 O CYS B 110 SHEET 4 AA5 4 VAL B 71 ALA B 74 -1 O ALA B 74 N PHE B 47 SHEET 1 AA6 5 PHE B 156 PRO B 159 0 SHEET 2 AA6 5 CYS B 131 THR B 137 -1 N ALA B 136 O PHE B 156 SHEET 3 AA6 5 LYS B 114 ASP B 126 -1 N LEU B 124 O VAL B 133 SHEET 4 AA6 5 MET B 206 GLU B 216 -1 O ILE B 209 N LEU B 121 SHEET 5 AA6 5 LYS B 222 CYS B 226 -1 O CYS B 225 N GLY B 213 SHEET 1 AA7 5 PHE B 156 PRO B 159 0 SHEET 2 AA7 5 CYS B 131 THR B 137 -1 N ALA B 136 O PHE B 156 SHEET 3 AA7 5 LYS B 114 ASP B 126 -1 N LEU B 124 O VAL B 133 SHEET 4 AA7 5 MET B 206 GLU B 216 -1 O ILE B 209 N LEU B 121 SHEET 5 AA7 5 ALA B 229 ALA B 232 -1 O LYS B 230 N GLU B 208 SSBOND 1 CYS A 151 CYS A 154 1555 1555 2.03 SSBOND 2 CYS B 151 CYS B 154 1555 1555 2.03 LINK OD1 ASP A 220 MG MG A 302 1555 1555 2.08 LINK OD2 ASP A 220 MG MG A 302 1555 1555 2.22 LINK OD1 ASP B 220 MG MG A 302 1555 1555 2.16 LINK MG MG A 302 O HOH A 401 1555 1555 2.09 LINK MG MG A 302 O HOH B 317 1555 1555 2.08 LINK MG MG A 302 O HOH A 404 1555 1555 2.09 LINK MG MG A 302 O HOH B 301 1555 1555 2.09 CISPEP 1 ASN A 210 PRO A 211 0 -1.30 CISPEP 2 ASN B 210 PRO B 211 0 1.26 SITE 1 AC1 15 GLN A 20 VAL A 48 LYS A 50 GLY A 57 SITE 2 AC1 15 ARG A 58 GLY A 59 VAL A 71 GLY A 111 SITE 3 AC1 15 ALA A 112 VAL A 113 ILE A 115 GLU A 118 SITE 4 AC1 15 ASN A 210 PRO A 211 ASP A 228 SITE 1 AC2 6 ASP A 220 HOH A 401 HOH A 404 ASP B 220 SITE 2 AC2 6 HOH B 301 HOH B 317 CRYST1 79.252 95.787 68.873 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012618 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014520 0.00000