HEADER RNA 16-JAN-19 6NOA TITLE SOLUTION STRUCTURE OF THE RNA ELEMENT THAT RECRUITS EIF3 TO THE 5'-UTR TITLE 2 OF C-JUN AND REGULATES SPECIALIZED TRANSLATION INITIATION (APICAL TITLE 3 LOOP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-JUN SL1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RNA (56-MER) SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS RNA, C-JUN, MRNA, EIF3, CAP-DEPENDENT, SPECIALIZED TRANSLATION KEYWDS 2 INITIATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.WALKER,M.SHORTRIDGE,G.VARANI REVDAT 3 01-MAY-24 6NOA 1 REMARK REVDAT 2 18-NOV-20 6NOA 1 JRNL REVDAT 1 22-JUL-20 6NOA 0 JRNL AUTH M.J.WALKER,M.D.SHORTRIDGE,D.D.ALBIN,L.Y.COMINSKY,G.VARANI JRNL TITL STRUCTURE OF THE RNA SPECIALIZED TRANSLATION INITIATION JRNL TITL 2 ELEMENT THAT RECRUITS EIF3 TO THE 5'-UTR OF C-JUN. JRNL REF J.MOL.BIOL. V. 432 1841 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 31953146 JRNL DOI 10.1016/J.JMB.2020.01.001 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NOA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239104. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 278 REMARK 210 PH : 6.1; 6.1 REMARK 210 IONIC STRENGTH : 20MM SODIUM PHOSPHATE; 20MM REMARK 210 SODIUM PHOSPHATE REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [A,G-98% D3', 4', 5', 5"; REMARK 210 C,U-98% D3', 4', 5', 5", 5] RNA, REMARK 210 100% D2O; 1.0 MM RNA, 100% D2O; REMARK 210 1.0 MM RNA, 90% H2O/10% D2O; 1.0 REMARK 210 MM RNA, 100% D2O; 1.0 MM RNA, 90% REMARK 210 H2O/10% D2O; 1.0 MM [A,G-98% D3' REMARK 210 , 4', 5', 5"; C,U-98% D3', 4', 5' REMARK 210 , 5", 5] RNA, 100% D2O; 1.0 MM REMARK 210 [A,C,G,U-98% 13C, A,C,G,U-98% REMARK 210 15N] RNA, 100% D2O; 1.0 MM [A,C, REMARK 210 G,U-98% 13C, A,C,G,U-98% 15N] REMARK 210 RNA, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 3D 1H-13C NOESY; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, SPARKY, CCPNMR REMARK 210 ANALYSIS, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 C A 112 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 4 A A 120 C1' - O4' - C4' ANGL. DEV. = -4.3 DEGREES REMARK 500 8 C A 112 C1' - O4' - C4' ANGL. DEV. = -6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30560 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF A C-JUN 5' UTR STEM-LOOP ASSOCIATED WITH REMARK 900 SPECIALIZED CAP-DEPENDENT TRANSLATION INITIATION (WT APICAL LOOP) DBREF 6NOA A 93 148 GB 186624 J04111.1 378 433 SEQRES 1 A 56 G G C A G U A U A G U C C SEQRES 2 A 56 G A A C U G C A A A U C U SEQRES 3 A 56 U A U U U U C U U U U C A SEQRES 4 A 56 C C U U C U C U C U A A C SEQRES 5 A 56 U G C C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1