HEADER IMMUNE SYSTEM 16-JAN-19 6NOS TITLE PD-L1 IGV DOMAIN V76T WITH FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH 1 LIGAND 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 18-134; COMPND 5 SYNONYM: PROGRAMMED DEATH LIGAND 1,B7 HOMOLOG 1,B7-H1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD274, B7H1, PDCD1L1, PDCD1LG1, PDL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS FRAGMENT-BASED SCREENING, STRUCTURE-BASED DESIGN, PD-L1 INHIBITOR, KEYWDS 2 CANCER DRUG DISCOVERY, IMMUNOTHERAPY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHAO,E.PERRY REVDAT 5 30-OCT-24 6NOS 1 REMARK REVDAT 4 11-OCT-23 6NOS 1 REMARK REVDAT 3 27-NOV-19 6NOS 1 REMARK REVDAT 2 06-MAR-19 6NOS 1 JRNL REVDAT 1 20-FEB-19 6NOS 0 JRNL AUTH E.PERRY,J.J.MILLS,B.ZHAO,F.WANG,Q.SUN,P.P.CHRISTOV,J.C.TARR, JRNL AUTH 2 T.A.RIETZ,E.T.OLEJNICZAK,T.LEE,S.FESIK JRNL TITL FRAGMENT-BASED SCREENING OF PROGRAMMED DEATH LIGAND 1 JRNL TITL 2 (PD-L1). JRNL REF BIOORG. MED. CHEM. LETT. V. 29 786 2019 JRNL REFN ESSN 1464-3405 JRNL PMID 30728114 JRNL DOI 10.1016/J.BMCL.2019.01.028 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.6 REMARK 3 NUMBER OF REFLECTIONS : 6015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4223 - 4.2839 0.98 1827 203 0.1594 0.2255 REMARK 3 2 4.2839 - 3.4019 0.95 1719 190 0.1919 0.3207 REMARK 3 3 3.4019 - 2.9723 0.77 1357 151 0.2230 0.3345 REMARK 3 4 2.9723 - 2.7008 0.30 511 57 0.2371 0.2827 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2052 REMARK 3 ANGLE : 1.415 2782 REMARK 3 CHIRALITY : 0.068 311 REMARK 3 PLANARITY : 0.008 353 REMARK 3 DIHEDRAL : 10.528 1220 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2965 104.3170 18.5511 REMARK 3 T TENSOR REMARK 3 T11: 0.4654 T22: 0.3691 REMARK 3 T33: -0.1341 T12: 0.1359 REMARK 3 T13: -0.2264 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.3613 L22: 1.3698 REMARK 3 L33: 1.2648 L12: -0.6722 REMARK 3 L13: -0.9360 L23: 1.2634 REMARK 3 S TENSOR REMARK 3 S11: -0.2661 S12: -0.4512 S13: -0.0311 REMARK 3 S21: 0.3875 S22: 0.2036 S23: -0.0923 REMARK 3 S31: -0.0501 S32: 0.1407 S33: -0.2487 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4939 110.5082 10.3854 REMARK 3 T TENSOR REMARK 3 T11: -0.0108 T22: 0.5606 REMARK 3 T33: 0.4669 T12: 0.0083 REMARK 3 T13: -0.0167 T23: -0.1383 REMARK 3 L TENSOR REMARK 3 L11: 0.1850 L22: 1.2273 REMARK 3 L33: 1.1663 L12: 0.3832 REMARK 3 L13: -0.2847 L23: -0.0031 REMARK 3 S TENSOR REMARK 3 S11: 0.1979 S12: 0.3691 S13: 0.3639 REMARK 3 S21: 0.1171 S22: -0.1238 S23: -0.5404 REMARK 3 S31: 0.1156 S32: 0.4427 S33: 0.0165 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1028 99.6300 4.0273 REMARK 3 T TENSOR REMARK 3 T11: -0.0235 T22: 0.3916 REMARK 3 T33: 0.4225 T12: 0.0620 REMARK 3 T13: 0.0775 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 2.1362 L22: 2.1048 REMARK 3 L33: 2.6515 L12: -0.6653 REMARK 3 L13: 1.1267 L23: -0.3436 REMARK 3 S TENSOR REMARK 3 S11: -0.2718 S12: 0.2656 S13: -0.7453 REMARK 3 S21: 0.0613 S22: -0.2808 S23: 0.2655 REMARK 3 S31: 0.1471 S32: 0.0048 S33: -0.0534 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1885 100.0684 -3.7167 REMARK 3 T TENSOR REMARK 3 T11: 0.4970 T22: 0.7235 REMARK 3 T33: 0.4598 T12: 0.2927 REMARK 3 T13: -0.1677 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 3.8935 L22: 1.1889 REMARK 3 L33: 3.0361 L12: 0.3724 REMARK 3 L13: 3.3651 L23: -0.0646 REMARK 3 S TENSOR REMARK 3 S11: 0.1348 S12: 0.5717 S13: -0.2898 REMARK 3 S21: -0.3978 S22: 0.0842 S23: -0.0427 REMARK 3 S31: -0.1097 S32: 0.4730 S33: 0.0075 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0011 107.4117 -4.8261 REMARK 3 T TENSOR REMARK 3 T11: 0.5266 T22: 0.3115 REMARK 3 T33: 0.3962 T12: -0.0390 REMARK 3 T13: -0.1315 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 8.7788 L22: 7.9171 REMARK 3 L33: 2.1704 L12: 2.5942 REMARK 3 L13: -0.1191 L23: -3.9724 REMARK 3 S TENSOR REMARK 3 S11: 0.6146 S12: 0.9232 S13: -0.5128 REMARK 3 S21: -0.8337 S22: -0.1707 S23: 0.2857 REMARK 3 S31: -0.0238 S32: 0.0462 S33: 0.0380 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5496 110.2962 4.6714 REMARK 3 T TENSOR REMARK 3 T11: 0.2772 T22: 0.3665 REMARK 3 T33: 0.7445 T12: -0.1274 REMARK 3 T13: 0.0526 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 8.7892 L22: 4.6914 REMARK 3 L33: 2.9553 L12: 0.1585 REMARK 3 L13: 4.7669 L23: 0.5630 REMARK 3 S TENSOR REMARK 3 S11: -0.7418 S12: 1.1101 S13: 1.2867 REMARK 3 S21: -0.0239 S22: -0.0317 S23: -1.0517 REMARK 3 S31: -1.1226 S32: 0.9304 S33: 0.5395 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3226 106.2319 6.8162 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.2397 REMARK 3 T33: 0.1896 T12: -0.1179 REMARK 3 T13: 0.1414 T23: 0.1305 REMARK 3 L TENSOR REMARK 3 L11: 3.2623 L22: 2.7003 REMARK 3 L33: 0.9915 L12: -0.0067 REMARK 3 L13: -0.1034 L23: -0.4257 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: 0.3189 S13: 0.4335 REMARK 3 S21: -0.2738 S22: -0.0437 S23: -0.4674 REMARK 3 S31: -0.0498 S32: 0.2295 S33: 0.4756 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3383 104.6838 13.7048 REMARK 3 T TENSOR REMARK 3 T11: 0.1284 T22: 0.0873 REMARK 3 T33: 0.3733 T12: -0.1056 REMARK 3 T13: 0.0250 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 2.9288 L22: 2.6624 REMARK 3 L33: 1.3367 L12: -2.2837 REMARK 3 L13: 0.8964 L23: -0.8901 REMARK 3 S TENSOR REMARK 3 S11: -0.1986 S12: -0.4749 S13: -0.1068 REMARK 3 S21: 0.3957 S22: 0.1161 S23: 0.3357 REMARK 3 S31: 0.1394 S32: -0.3707 S33: 0.1200 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9018 114.8391 0.1012 REMARK 3 T TENSOR REMARK 3 T11: 0.3625 T22: 0.6526 REMARK 3 T33: 0.4380 T12: -0.3937 REMARK 3 T13: -0.2593 T23: 0.1983 REMARK 3 L TENSOR REMARK 3 L11: 4.8315 L22: 1.7106 REMARK 3 L33: 0.8536 L12: 1.0779 REMARK 3 L13: 0.4945 L23: -0.4680 REMARK 3 S TENSOR REMARK 3 S11: -0.2832 S12: 0.7128 S13: -0.5871 REMARK 3 S21: -0.4617 S22: 0.4555 S23: 0.0262 REMARK 3 S31: 0.2826 S32: -0.3196 S33: -0.1847 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7510 82.1892 2.3904 REMARK 3 T TENSOR REMARK 3 T11: 0.4548 T22: 0.4393 REMARK 3 T33: 0.0334 T12: -0.0396 REMARK 3 T13: -0.2997 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 4.0048 L22: 0.6927 REMARK 3 L33: 1.0363 L12: 0.9825 REMARK 3 L13: 1.2039 L23: 0.7355 REMARK 3 S TENSOR REMARK 3 S11: -0.2097 S12: 0.4734 S13: 0.2944 REMARK 3 S21: -0.1198 S22: 0.0561 S23: -0.0307 REMARK 3 S31: -0.1807 S32: 0.0785 S33: -0.1283 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0809 75.4255 12.9235 REMARK 3 T TENSOR REMARK 3 T11: 0.3606 T22: 0.2417 REMARK 3 T33: 0.4939 T12: 0.0164 REMARK 3 T13: -0.1537 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.0614 L22: 1.9417 REMARK 3 L33: 1.5079 L12: -0.1082 REMARK 3 L13: -0.2479 L23: -1.0079 REMARK 3 S TENSOR REMARK 3 S11: 0.1211 S12: 0.1829 S13: -0.0299 REMARK 3 S21: 0.2365 S22: -0.0889 S23: -0.1344 REMARK 3 S31: 0.1431 S32: 0.1981 S33: -0.0523 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2610 84.0384 13.6890 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1256 REMARK 3 T33: 0.1535 T12: 0.0588 REMARK 3 T13: -0.0074 T23: 0.1346 REMARK 3 L TENSOR REMARK 3 L11: 7.2262 L22: 2.3954 REMARK 3 L33: 3.6561 L12: 0.3807 REMARK 3 L13: -1.0687 L23: 0.9314 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: 0.5425 S13: 0.0937 REMARK 3 S21: -0.1318 S22: -0.3272 S23: -0.0510 REMARK 3 S31: -0.2638 S32: 0.6132 S33: 0.1580 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5028 86.4697 24.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.6945 T22: 0.6926 REMARK 3 T33: 0.2968 T12: 0.1708 REMARK 3 T13: -0.1030 T23: 0.1427 REMARK 3 L TENSOR REMARK 3 L11: 3.9506 L22: 2.3556 REMARK 3 L33: 3.8107 L12: 0.8139 REMARK 3 L13: -2.4364 L23: 0.0878 REMARK 3 S TENSOR REMARK 3 S11: 0.4829 S12: 0.1469 S13: -0.2443 REMARK 3 S21: 0.7324 S22: -0.2969 S23: -0.3680 REMARK 3 S31: 0.6912 S32: 1.2013 S33: 0.0942 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8195 82.5759 25.7475 REMARK 3 T TENSOR REMARK 3 T11: 0.3105 T22: 0.6966 REMARK 3 T33: 0.5661 T12: 0.1536 REMARK 3 T13: 0.2185 T23: 0.1244 REMARK 3 L TENSOR REMARK 3 L11: 0.6287 L22: 3.0300 REMARK 3 L33: 1.8399 L12: -1.0730 REMARK 3 L13: 0.9474 L23: -1.5563 REMARK 3 S TENSOR REMARK 3 S11: 0.2116 S12: -0.9162 S13: 0.1093 REMARK 3 S21: 0.3203 S22: -0.1105 S23: 0.2561 REMARK 3 S31: -0.3684 S32: -0.1453 S33: 0.1461 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3369 75.6438 16.4987 REMARK 3 T TENSOR REMARK 3 T11: 0.2667 T22: 0.3420 REMARK 3 T33: 0.3677 T12: 0.0451 REMARK 3 T13: -0.0918 T23: 0.0640 REMARK 3 L TENSOR REMARK 3 L11: 8.4283 L22: 3.3035 REMARK 3 L33: 3.2342 L12: -0.6982 REMARK 3 L13: -3.1642 L23: 0.7962 REMARK 3 S TENSOR REMARK 3 S11: -0.5081 S12: -0.6430 S13: -1.3356 REMARK 3 S21: 0.2239 S22: 0.4541 S23: -0.1764 REMARK 3 S31: 0.3553 S32: -0.0569 S33: -0.1789 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4133 86.1076 12.0136 REMARK 3 T TENSOR REMARK 3 T11: 0.3922 T22: -0.0352 REMARK 3 T33: 0.0883 T12: 0.1729 REMARK 3 T13: -0.0286 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 3.2610 L22: 2.6757 REMARK 3 L33: 2.1354 L12: -0.6232 REMARK 3 L13: -0.7445 L23: -0.9724 REMARK 3 S TENSOR REMARK 3 S11: -0.2902 S12: 0.0627 S13: 0.2141 REMARK 3 S21: -0.1090 S22: -0.2130 S23: -0.1867 REMARK 3 S31: 0.0343 S32: 0.3073 S33: -0.7699 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0215 85.0210 7.2355 REMARK 3 T TENSOR REMARK 3 T11: 0.1158 T22: 0.1260 REMARK 3 T33: 0.4204 T12: 0.1874 REMARK 3 T13: 0.0161 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 4.1755 L22: 3.0031 REMARK 3 L33: 2.2134 L12: 0.9087 REMARK 3 L13: -0.3393 L23: -0.8434 REMARK 3 S TENSOR REMARK 3 S11: -0.1124 S12: 0.2898 S13: 0.4708 REMARK 3 S21: 0.0920 S22: -0.2237 S23: 0.0883 REMARK 3 S31: -0.2231 S32: -0.2570 S33: -0.2214 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2429 81.7518 21.1317 REMARK 3 T TENSOR REMARK 3 T11: 0.3541 T22: 0.4625 REMARK 3 T33: 0.3830 T12: -0.0581 REMARK 3 T13: 0.0539 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 8.2273 L22: 3.4904 REMARK 3 L33: 4.4755 L12: 1.2735 REMARK 3 L13: 0.0610 L23: 3.6246 REMARK 3 S TENSOR REMARK 3 S11: 0.3093 S12: -0.9450 S13: 1.0182 REMARK 3 S21: 0.6466 S22: -0.2290 S23: -0.5851 REMARK 3 S31: -0.5946 S32: 0.3525 S33: 0.0499 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NOS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7548 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : 0.09500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46900 REMARK 200 R SYM FOR SHELL (I) : 0.64900 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1I8L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.056 M SODIUM PHOSPHATE MONOBASIC, REMARK 280 1.344 M POTASSIUM PHOSPHATE DIBASIC, EVAPORATION, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.00700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.70050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.00700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.70050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS B 144 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 41 CE NZ REMARK 470 GLU A 45 CB CG CD OE1 OE2 REMARK 470 LYS A 46 CB CG CD CE NZ REMARK 470 GLN A 47 CG CD OE1 NE2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 ARG A 82 NE CZ NH1 NH2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 ASP A 90 CG OD1 OD2 REMARK 470 LEU A 94 CG CD1 CD2 REMARK 470 GLN A 107 CG CD OE1 NE2 REMARK 470 LYS A 124 NZ REMARK 470 HIS A 139 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 45 CB CG CD OE1 OE2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 LEU B 74 CD1 CD2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 ASP B 90 CG OD1 OD2 REMARK 470 HIS B 139 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 143 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 40 113.68 -160.15 REMARK 500 GLU A 45 -70.08 -80.69 REMARK 500 LYS A 46 -104.37 -125.62 REMARK 500 GLU A 60 68.40 38.45 REMARK 500 HIS A 69 66.38 38.52 REMARK 500 GLN A 83 19.82 50.06 REMARK 500 ALA A 97 37.83 -93.00 REMARK 500 GLU B 45 -72.83 -39.62 REMARK 500 LYS B 46 -89.52 -120.28 REMARK 500 GLU B 60 69.10 37.08 REMARK 500 HIS B 69 56.76 26.64 REMARK 500 ALA B 97 41.19 -91.77 REMARK 500 ASP B 103 71.48 53.69 REMARK 500 HIS B 142 -72.99 -133.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KWA A 400 DBREF 6NOS A 18 134 UNP Q9NZQ7 PD1L1_HUMAN 18 134 DBREF 6NOS B 18 134 UNP Q9NZQ7 PD1L1_HUMAN 18 134 SEQADV 6NOS THR A 76 UNP Q9NZQ7 VAL 76 ENGINEERED MUTATION SEQADV 6NOS ALA A 135 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS ALA A 136 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS ALA A 137 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS LEU A 138 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS HIS A 139 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS HIS A 140 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS HIS A 141 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS HIS A 142 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS HIS A 143 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS HIS A 144 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS THR B 76 UNP Q9NZQ7 VAL 76 ENGINEERED MUTATION SEQADV 6NOS ALA B 135 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS ALA B 136 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS ALA B 137 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS LEU B 138 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS HIS B 139 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS HIS B 140 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS HIS B 141 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS HIS B 142 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS HIS B 143 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6NOS HIS B 144 UNP Q9NZQ7 EXPRESSION TAG SEQRES 1 A 127 ALA PHE THR VAL THR VAL PRO LYS ASP LEU TYR VAL VAL SEQRES 2 A 127 GLU TYR GLY SER ASN MET THR ILE GLU CYS LYS PHE PRO SEQRES 3 A 127 VAL GLU LYS GLN LEU ASP LEU ALA ALA LEU ILE VAL TYR SEQRES 4 A 127 TRP GLU MET GLU ASP LYS ASN ILE ILE GLN PHE VAL HIS SEQRES 5 A 127 GLY GLU GLU ASP LEU LYS THR GLN HIS SER SER TYR ARG SEQRES 6 A 127 GLN ARG ALA ARG LEU LEU LYS ASP GLN LEU SER LEU GLY SEQRES 7 A 127 ASN ALA ALA LEU GLN ILE THR ASP VAL LYS LEU GLN ASP SEQRES 8 A 127 ALA GLY VAL TYR ARG CYS MET ILE SER TYR GLY GLY ALA SEQRES 9 A 127 ASP TYR LYS ARG ILE THR VAL LYS VAL ASN ALA PRO TYR SEQRES 10 A 127 ALA ALA ALA LEU HIS HIS HIS HIS HIS HIS SEQRES 1 B 127 ALA PHE THR VAL THR VAL PRO LYS ASP LEU TYR VAL VAL SEQRES 2 B 127 GLU TYR GLY SER ASN MET THR ILE GLU CYS LYS PHE PRO SEQRES 3 B 127 VAL GLU LYS GLN LEU ASP LEU ALA ALA LEU ILE VAL TYR SEQRES 4 B 127 TRP GLU MET GLU ASP LYS ASN ILE ILE GLN PHE VAL HIS SEQRES 5 B 127 GLY GLU GLU ASP LEU LYS THR GLN HIS SER SER TYR ARG SEQRES 6 B 127 GLN ARG ALA ARG LEU LEU LYS ASP GLN LEU SER LEU GLY SEQRES 7 B 127 ASN ALA ALA LEU GLN ILE THR ASP VAL LYS LEU GLN ASP SEQRES 8 B 127 ALA GLY VAL TYR ARG CYS MET ILE SER TYR GLY GLY ALA SEQRES 9 B 127 ASP TYR LYS ARG ILE THR VAL LYS VAL ASN ALA PRO TYR SEQRES 10 B 127 ALA ALA ALA LEU HIS HIS HIS HIS HIS HIS HET KWA A 400 16 HETNAM KWA 1-[5-(3,5-DICHLOROPHENYL)FURAN-2-YL]-N- HETNAM 2 KWA METHYLMETHANAMINE FORMUL 3 KWA C12 H11 CL2 N O HELIX 1 AA1 HIS A 78 ARG A 82 5 5 HELIX 2 AA2 LYS A 89 GLY A 95 5 7 HELIX 3 AA3 LYS A 105 ALA A 109 5 5 HELIX 4 AA4 PRO A 133 HIS A 142 1 10 HELIX 5 AA5 ASP B 49 ALA B 52 5 4 HELIX 6 AA6 HIS B 78 ARG B 82 5 5 HELIX 7 AA7 ASP B 90 GLY B 95 5 6 HELIX 8 AA8 LYS B 105 ALA B 109 5 5 HELIX 9 AA9 PRO B 133 HIS B 140 1 8 SHEET 1 AA1 6 LEU A 27 GLU A 31 0 SHEET 2 AA1 6 ALA A 121 ASN A 131 1 O THR A 127 N TYR A 28 SHEET 3 AA1 6 GLY A 110 SER A 117 -1 N TYR A 112 O ILE A 126 SHEET 4 AA1 6 ILE A 54 MET A 59 -1 N GLU A 58 O ARG A 113 SHEET 5 AA1 6 LYS A 62 VAL A 68 -1 O LYS A 62 N MET A 59 SHEET 6 AA1 6 GLU A 71 ASP A 73 -1 O ASP A 73 N GLN A 66 SHEET 1 AA2 3 MET A 36 ILE A 38 0 SHEET 2 AA2 3 LEU A 99 ILE A 101 -1 O LEU A 99 N ILE A 38 SHEET 3 AA2 3 ALA A 85 LEU A 87 -1 N ARG A 86 O GLN A 100 SHEET 1 AA3 6 LEU B 27 GLU B 31 0 SHEET 2 AA3 6 ALA B 121 ASN B 131 1 O THR B 127 N TYR B 28 SHEET 3 AA3 6 GLY B 110 SER B 117 -1 N TYR B 112 O ILE B 126 SHEET 4 AA3 6 ILE B 54 MET B 59 -1 N GLU B 58 O ARG B 113 SHEET 5 AA3 6 LYS B 62 VAL B 68 -1 O PHE B 67 N VAL B 55 SHEET 6 AA3 6 GLU B 71 ASP B 73 -1 O GLU B 71 N VAL B 68 SHEET 1 AA4 3 MET B 36 ILE B 38 0 SHEET 2 AA4 3 LEU B 99 ILE B 101 -1 O ILE B 101 N MET B 36 SHEET 3 AA4 3 ALA B 85 LEU B 87 -1 N ARG B 86 O GLN B 100 SSBOND 1 CYS A 40 CYS A 114 1555 1555 2.04 SSBOND 2 CYS B 40 CYS B 114 1555 1555 2.00 SITE 1 AC1 10 ILE A 54 TYR A 56 MET A 115 ILE A 116 SITE 2 AC1 10 SER A 117 ASP A 122 TYR B 56 GLN B 66 SITE 3 AC1 10 ASP B 122 TYR B 123 CRYST1 84.014 97.401 33.182 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011903 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030137 0.00000