HEADER ISOMERASE 17-JAN-19 6NP8 TITLE XANTHOMONAS CITRI PHOSPHO-PGM IN COMPLEX WITH MANNOSE-6-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI (STRAIN 306); SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: 306; SOURCE 5 GENE: XANA, XAC3579; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOGLUCOMUTASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.STIERS,L.J.BEAMER REVDAT 5 11-OCT-23 6NP8 1 REMARK HETSYN REVDAT 4 29-JUL-20 6NP8 1 COMPND REMARK HETNAM SITE REVDAT 3 27-NOV-19 6NP8 1 REMARK REVDAT 2 15-MAY-19 6NP8 1 JRNL REVDAT 1 10-APR-19 6NP8 0 JRNL AUTH K.M.STIERS,A.C.GRAHAM,J.S.ZHU,D.L.JAKEMAN,J.C.NIX,L.J.BEAMER JRNL TITL STRUCTURAL AND DYNAMICAL DESCRIPTION OF THE ENZYMATIC JRNL TITL 2 REACTION OF A PHOSPHOHEXOMUTASE. JRNL REF STRUCT DYN. V. 6 24703 2019 JRNL REFN ESSN 2329-7778 JRNL PMID 31041362 JRNL DOI 10.1063/1.5092803 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 79682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 3846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8723 - 4.2289 1.00 3103 131 0.1375 0.1467 REMARK 3 2 4.2289 - 3.3569 1.00 2911 140 0.1259 0.1530 REMARK 3 3 3.3569 - 2.9327 1.00 2896 132 0.1481 0.1740 REMARK 3 4 2.9327 - 2.6646 1.00 2883 132 0.1545 0.1690 REMARK 3 5 2.6646 - 2.4736 1.00 2836 152 0.1470 0.1809 REMARK 3 6 2.4736 - 2.3278 1.00 2827 145 0.1556 0.1963 REMARK 3 7 2.3278 - 2.2112 1.00 2827 164 0.1712 0.2307 REMARK 3 8 2.2112 - 2.1150 1.00 2793 158 0.1559 0.2017 REMARK 3 9 2.1150 - 2.0335 1.00 2849 132 0.1647 0.1946 REMARK 3 10 2.0335 - 1.9634 1.00 2804 156 0.1685 0.2283 REMARK 3 11 1.9634 - 1.9020 1.00 2770 162 0.1787 0.2104 REMARK 3 12 1.9020 - 1.8476 1.00 2795 156 0.1753 0.2313 REMARK 3 13 1.8476 - 1.7990 1.00 2804 148 0.1696 0.1946 REMARK 3 14 1.7990 - 1.7551 1.00 2753 156 0.1745 0.2014 REMARK 3 15 1.7551 - 1.7152 1.00 2840 120 0.1824 0.2205 REMARK 3 16 1.7152 - 1.6787 1.00 2803 141 0.1922 0.2583 REMARK 3 17 1.6787 - 1.6451 1.00 2786 137 0.1851 0.2393 REMARK 3 18 1.6451 - 1.6140 1.00 2818 114 0.2001 0.2122 REMARK 3 19 1.6140 - 1.5852 1.00 2786 152 0.2403 0.2845 REMARK 3 20 1.5852 - 1.5583 1.00 2780 144 0.2904 0.2896 REMARK 3 21 1.5583 - 1.5332 0.99 2760 146 0.3347 0.3920 REMARK 3 22 1.5332 - 1.5096 0.99 2728 132 0.3677 0.4008 REMARK 3 23 1.5096 - 1.4874 0.99 2754 148 0.4321 0.4172 REMARK 3 24 1.4874 - 1.4665 0.99 2717 133 0.4664 0.4636 REMARK 3 25 1.4665 - 1.4466 0.98 2766 139 0.5121 0.5815 REMARK 3 26 1.4466 - 1.4279 0.98 2708 129 0.5252 0.5305 REMARK 3 27 1.4279 - 1.4100 0.98 2739 147 0.5676 0.5125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3758 REMARK 3 ANGLE : 0.898 5112 REMARK 3 CHIRALITY : 0.078 550 REMARK 3 PLANARITY : 0.009 685 REMARK 3 DIHEDRAL : 8.295 2908 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5145 38.1972 15.8483 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1374 REMARK 3 T33: 0.1329 T12: -0.0010 REMARK 3 T13: 0.0016 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.1150 L22: 0.3229 REMARK 3 L33: 0.3437 L12: -0.1291 REMARK 3 L13: -0.1091 L23: 0.2269 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.0136 S13: 0.0066 REMARK 3 S21: -0.0222 S22: 0.0031 S23: 0.0515 REMARK 3 S31: 0.0345 S32: -0.0369 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1352 47.0741 31.5242 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.1236 REMARK 3 T33: 0.1191 T12: 0.0008 REMARK 3 T13: -0.0045 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.0791 L22: 0.1662 REMARK 3 L33: 0.4880 L12: -0.0710 REMARK 3 L13: -0.1507 L23: 0.1687 REMARK 3 S TENSOR REMARK 3 S11: -0.0111 S12: -0.0110 S13: -0.0040 REMARK 3 S21: 0.0004 S22: 0.0219 S23: 0.0073 REMARK 3 S31: 0.0361 S32: 0.0365 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 448 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6932 62.6342 18.9187 REMARK 3 T TENSOR REMARK 3 T11: 0.1175 T22: 0.1033 REMARK 3 T33: 0.1170 T12: 0.0029 REMARK 3 T13: 0.0066 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.2493 L22: 0.1372 REMARK 3 L33: 0.2592 L12: -0.0199 REMARK 3 L13: 0.0891 L23: -0.1021 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: 0.0274 S13: -0.0083 REMARK 3 S21: -0.0284 S22: -0.0049 S23: -0.0080 REMARK 3 S31: -0.0188 S32: 0.0206 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239163. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79996 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 45.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 1.71500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BMN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8000, 0.2M MGCL, 0.1M HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.96500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.57000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.57000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.96500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 25 N CA C O CB CG CD REMARK 480 ARG A 25 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 603 O HOH A 1013 1.88 REMARK 500 O HOH A 696 O HOH A 1067 1.97 REMARK 500 O HOH A 933 O HOH A 1155 2.00 REMARK 500 O HOH A 782 O HOH A 1117 2.01 REMARK 500 O HOH A 614 O HOH A 936 2.01 REMARK 500 O HOH A 767 O HOH A 1029 2.03 REMARK 500 O HOH A 673 O HOH A 1155 2.04 REMARK 500 O HOH A 610 O HOH A 618 2.04 REMARK 500 O4 PEG A 505 O HOH A 601 2.06 REMARK 500 O HOH A 612 O HOH A 689 2.07 REMARK 500 O HOH A 1089 O HOH A 1114 2.07 REMARK 500 OE2 GLU A 254 O HOH A 602 2.08 REMARK 500 O HOH A 827 O HOH A 1106 2.08 REMARK 500 O PRO A 139 O HOH A 603 2.09 REMARK 500 O HOH A 827 O HOH A 933 2.14 REMARK 500 O HOH A 1182 O HOH A 1230 2.15 REMARK 500 O GLY A 229 O HOH A 604 2.16 REMARK 500 NH1 ARG A 12 OD1 ASN A 99 2.16 REMARK 500 O HOH A 875 O HOH A 1224 2.16 REMARK 500 O HOH A 625 O HOH A 1060 2.17 REMARK 500 O HOH A 989 O HOH A 1169 2.18 REMARK 500 O HOH A 1151 O HOH A 1230 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1120 O HOH A 1154 3655 2.01 REMARK 500 O HOH A 604 O HOH A 1166 3655 2.06 REMARK 500 O HOH A 1067 O HOH A 1154 3655 2.09 REMARK 500 O HOH A 713 O HOH A 754 3645 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 -169.91 -163.06 REMARK 500 ASP A 36 -173.83 -66.33 REMARK 500 SEP A 97 -98.35 -65.15 REMARK 500 SEP A 97 -85.92 -69.69 REMARK 500 PRO A 100 170.57 -57.06 REMARK 500 ARG A 110 -149.06 -106.97 REMARK 500 ASN A 211 86.79 -158.83 REMARK 500 THR A 282 -40.88 -133.12 REMARK 500 SER A 322 21.90 -67.57 REMARK 500 SER A 322 21.90 -70.01 REMARK 500 PHE A 330 51.51 -91.30 REMARK 500 ASP A 400 87.93 -154.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 320 12.22 REMARK 500 GLU A 320 11.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SEP A 97 O2P REMARK 620 2 ASP A 237 OD2 103.1 REMARK 620 3 ASP A 239 OD1 91.6 98.6 REMARK 620 4 ASP A 239 OD2 81.4 144.0 45.4 REMARK 620 5 ASP A 241 OD1 153.4 102.2 92.6 82.9 REMARK 620 6 HOH A 686 O 82.6 85.8 173.4 130.1 91.3 REMARK 620 7 HOH A 750 O 53.9 149.9 101.0 59.3 99.6 73.1 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NN1 RELATED DB: PDB REMARK 900 RELATED ID: 6NN2 RELATED DB: PDB REMARK 900 RELATED ID: 6NNO RELATED DB: PDB REMARK 900 RELATED ID: 6NNN RELATED DB: PDB REMARK 900 RELATED ID: 6NNS RELATED DB: PDB REMARK 900 RELATED ID: 6NNP RELATED DB: PDB REMARK 900 RELATED ID: 6NOQ RELATED DB: PDB REMARK 900 RELATED ID: 6NOL RELATED DB: PDB REMARK 900 RELATED ID: 6NNU RELATED DB: PDB REMARK 900 RELATED ID: 6NNT RELATED DB: PDB DBREF 6NP8 A 1 448 UNP Q8PGN7 Q8PGN7_XANAC 3 450 SEQADV 6NP8 MET A -19 UNP Q8PGN7 INITIATING METHIONINE SEQADV 6NP8 GLY A -18 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 SER A -17 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 SER A -16 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 HIS A -15 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 HIS A -14 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 HIS A -13 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 HIS A -12 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 HIS A -11 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 HIS A -10 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 SER A -9 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 SER A -8 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 GLU A -7 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 ASN A -6 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 LEU A -5 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 TYR A -4 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 PHE A -3 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 GLN A -2 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 SER A -1 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NP8 HIS A 0 UNP Q8PGN7 EXPRESSION TAG SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLU SEQRES 2 A 468 ASN LEU TYR PHE GLN SER HIS MET THR LEU PRO ALA PHE SEQRES 3 A 468 LYS ALA TYR ASP ILE ARG GLY ARG VAL PRO ASP GLU LEU SEQRES 4 A 468 ASN GLU ASP LEU ALA ARG ARG ILE GLY VAL ALA LEU ALA SEQRES 5 A 468 ALA GLN LEU ASP GLN GLY PRO VAL VAL LEU GLY HIS ASP SEQRES 6 A 468 VAL ARG LEU ALA SER PRO ALA LEU GLN GLU ALA LEU SER SEQRES 7 A 468 ALA GLY LEU ARG ALA SER GLY ARG ASP VAL ILE ASP ILE SEQRES 8 A 468 GLY LEU CYS GLY THR GLU GLU VAL TYR PHE GLN THR ASP SEQRES 9 A 468 TYR LEU LYS ALA ALA GLY GLY VAL MET VAL THR ALA SEP SEQRES 10 A 468 HIS ASN PRO MET ASP TYR ASN GLY MET LYS LEU VAL ARG SEQRES 11 A 468 GLU GLN ALA ARG PRO ILE SER SER ASP THR GLY LEU PHE SEQRES 12 A 468 ALA ILE ARG ASP THR VAL ALA ALA ASP THR ALA ALA PRO SEQRES 13 A 468 GLY GLU PRO THR ALA SER GLU GLN SER ARG THR ASP LYS SEQRES 14 A 468 THR ALA TYR LEU GLU HIS LEU LEU SER TYR VAL ASP ARG SEQRES 15 A 468 SER THR LEU LYS PRO LEU LYS LEU VAL VAL ASN ALA GLY SEQRES 16 A 468 ASN GLY GLY ALA GLY LEU ILE VAL ASP LEU LEU ALA PRO SEQRES 17 A 468 HIS LEU PRO PHE GLU PHE VAL ARG VAL PHE HIS GLU PRO SEQRES 18 A 468 ASP GLY ASN PHE PRO ASN GLY ILE PRO ASN PRO LEU LEU SEQRES 19 A 468 PRO GLU ASN ARG ASP ALA THR ALA LYS ALA VAL LYS ASP SEQRES 20 A 468 ASN GLY ALA ASP PHE GLY ILE ALA TRP ASP GLY ASP PHE SEQRES 21 A 468 ASP ARG CYS PHE PHE PHE ASP HIS THR GLY ARG PHE ILE SEQRES 22 A 468 GLU GLY TYR TYR LEU VAL GLY LEU LEU ALA GLN ALA ILE SEQRES 23 A 468 LEU ALA LYS GLN PRO GLY GLY LYS VAL VAL HIS ASP PRO SEQRES 24 A 468 ARG LEU THR TRP ASN THR VAL GLU GLN VAL GLU GLU ALA SEQRES 25 A 468 GLY GLY ILE PRO VAL LEU CYS LYS SER GLY HIS ALA PHE SEQRES 26 A 468 ILE LYS GLU LYS MET ARG SER GLU ASN ALA VAL TYR GLY SEQRES 27 A 468 GLY GLU MET SER ALA HIS HIS TYR PHE ARG GLU PHE ALA SEQRES 28 A 468 TYR ALA ASP SER GLY MET ILE PRO TRP LEU LEU ILE ALA SEQRES 29 A 468 GLU LEU VAL SER GLN SER GLY ARG SER LEU ALA ASP LEU SEQRES 30 A 468 VAL GLU ALA ARG MET GLN LYS PHE PRO CYS SER GLY GLU SEQRES 31 A 468 ILE ASN PHE LYS VAL ALA ASP ALA LYS ALA SER VAL ALA SEQRES 32 A 468 ARG VAL MET GLU HIS TYR ALA SER LEU SER PRO GLU LEU SEQRES 33 A 468 ASP TYR THR ASP GLY ILE SER ALA ASP PHE GLY GLN TRP SEQRES 34 A 468 ARG PHE ASN LEU ARG SER SER ASN THR GLU PRO LEU LEU SEQRES 35 A 468 ARG LEU ASN VAL GLU THR ARG GLY ASP ALA ALA LEU LEU SEQRES 36 A 468 GLU THR ARG THR GLN GLU ILE SER ASN LEU LEU ARG GLY MODRES 6NP8 SEP A 97 SER MODIFIED RESIDUE HET SEP A 97 20 HET M6P A 501 16 HET CA A 502 1 HET PEG A 503 7 HET PEG A 504 14 HET PEG A 505 7 HETNAM SEP PHOSPHOSERINE HETNAM M6P 6-O-PHOSPHONO-ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN SEP PHOSPHONOSERINE HETSYN M6P ALPHA-D-MANNOSE-6-PHOSPHATE; 6-O-PHOSPHONO-ALPHA-D- HETSYN 2 M6P MANNOSE; 6-O-PHOSPHONO-D-MANNOSE; 6-O-PHOSPHONO- HETSYN 3 M6P MANNOSE FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 M6P C6 H13 O9 P FORMUL 3 CA CA 2+ FORMUL 4 PEG 3(C4 H10 O3) FORMUL 7 HOH *653(H2 O) HELIX 1 AA1 ASN A 20 ALA A 33 1 14 HELIX 2 AA2 ALA A 49 SER A 64 1 16 HELIX 3 AA3 GLY A 75 LEU A 86 1 12 HELIX 4 AA4 ARG A 110 ARG A 114 5 5 HELIX 5 AA5 SER A 117 THR A 120 5 4 HELIX 6 AA6 GLY A 121 ASP A 132 1 12 HELIX 7 AA7 LYS A 149 SER A 158 1 10 HELIX 8 AA8 TYR A 159 VAL A 160 5 2 HELIX 9 AA9 ASP A 161 LEU A 165 5 5 HELIX 10 AB1 GLY A 178 ALA A 187 1 10 HELIX 11 AB2 PRO A 188 LEU A 190 5 3 HELIX 12 AB3 LEU A 214 GLY A 229 1 16 HELIX 13 AB4 GLU A 254 ALA A 268 1 15 HELIX 14 AB5 THR A 282 ALA A 292 1 11 HELIX 15 AB6 GLY A 302 ASN A 314 1 13 HELIX 16 AB7 MET A 337 GLY A 351 1 15 HELIX 17 AB8 SER A 353 PHE A 365 1 13 HELIX 18 AB9 ASP A 377 ALA A 390 1 14 HELIX 19 AC1 SER A 391 SER A 393 5 3 HELIX 20 AC2 ASP A 431 GLY A 448 1 18 SHEET 1 AA1 6 ILE A 11 ARG A 14 0 SHEET 2 AA1 6 TYR A 103 VAL A 109 -1 O MET A 106 N ILE A 11 SHEET 3 AA1 6 GLY A 90 VAL A 94 -1 N GLY A 91 O VAL A 109 SHEET 4 AA1 6 VAL A 40 HIS A 44 1 N GLY A 43 O VAL A 94 SHEET 5 AA1 6 VAL A 68 LEU A 73 1 O ILE A 71 N LEU A 42 SHEET 6 AA1 6 GLU A 143 SER A 145 1 O GLN A 144 N ASP A 70 SHEET 1 AA2 5 GLU A 193 VAL A 197 0 SHEET 2 AA2 5 LYS A 169 ASN A 173 1 N VAL A 172 O VAL A 197 SHEET 3 AA2 5 PHE A 232 TRP A 236 1 O ILE A 234 N ASN A 173 SHEET 4 AA2 5 CYS A 243 PHE A 246 -1 O PHE A 246 N GLY A 233 SHEET 5 AA2 5 PHE A 252 ILE A 253 -1 O ILE A 253 N PHE A 245 SHEET 1 AA3 5 ILE A 295 LEU A 298 0 SHEET 2 AA3 5 LYS A 274 HIS A 277 1 N VAL A 275 O VAL A 297 SHEET 3 AA3 5 TYR A 317 GLY A 319 1 O TYR A 317 N VAL A 276 SHEET 4 AA3 5 HIS A 325 PHE A 327 -1 O TYR A 326 N GLY A 318 SHEET 5 AA3 5 ALA A 333 ASP A 334 -1 O ALA A 333 N PHE A 327 SHEET 1 AA4 5 ILE A 371 PHE A 373 0 SHEET 2 AA4 5 LEU A 422 THR A 428 -1 O LEU A 424 N ILE A 371 SHEET 3 AA4 5 TRP A 409 SER A 415 -1 N ARG A 414 O ARG A 423 SHEET 4 AA4 5 ILE A 402 ASP A 405 -1 N ILE A 402 O LEU A 413 SHEET 5 AA4 5 GLU A 395 ASP A 397 -1 N GLU A 395 O ASP A 405 LINK C ALA A 96 N ASEP A 97 1555 1555 1.33 LINK C ALA A 96 N BSEP A 97 1555 1555 1.33 LINK C ASEP A 97 N AHIS A 98 1555 1555 1.32 LINK C BSEP A 97 N BHIS A 98 1555 1555 1.33 LINK O2PASEP A 97 CA CA A 502 1555 1555 2.00 LINK OD2 ASP A 237 CA CA A 502 1555 1555 1.99 LINK OD1 ASP A 239 CA CA A 502 1555 1555 2.04 LINK OD2 ASP A 239 CA CA A 502 1555 1555 3.06 LINK OD1 ASP A 241 CA CA A 502 1555 1555 2.04 LINK CA CA A 502 O HOH A 686 1555 1555 2.31 LINK CA CA A 502 O BHOH A 750 1555 1555 2.17 CISPEP 1 VAL A 15 PRO A 16 0 6.34 CRYST1 43.930 54.300 171.140 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005843 0.00000