HEADER TRANSFERASE 17-JAN-19 6NPG OBSLTE 17-APR-19 6NPG 6OGN TITLE CRYSTAL STRUCTURE OF MOUSE PROTEIN ARGININE METHYLTRANSFERASE 7 IN TITLE 2 COMPLEX WITH SGC8158 CHEMICAL PROBE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTONE-ARGININE N-METHYLTRANSFERASE PRMT7,[MYELIN BASIC COMPND 5 PROTEIN]-ARGININE N-METHYLTRANSFERASE PRMT7; COMPND 6 EC: 2.1.1.321; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRMT7, KIAA1933; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFBOH-MHL KEYWDS PRMT7, SGC8158, CHEMICAL PROBE, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.HALABELIAN,A.DONG,H.ZENG,Y.LI,A.HUTCHINSON,A.SEITOVA,C.BOUNTRA, AUTHOR 2 A.M.EDWARDS,C.H.ARROWSMITH,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 17-APR-19 6NPG 1 OBSLTE REVDAT 1 30-JAN-19 6NPG 0 JRNL AUTH L.HALABELIAN,A.DONG,H.ZENG,Y.LI,A.HUTCHINSON,A.SEITOVA, JRNL AUTH 2 C.BOUNTRA,A.M.EDWARDS,C.H.ARROWSMITH JRNL TITL CRYSTAL STRUCTURE OF MOUSE PROTEIN ARGININE JRNL TITL 2 METHYLTRANSFERASE 7 IN COMPLEX WITH SGC8158 CHEMICAL PROBE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 17351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 909 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1194 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16000 REMARK 3 B22 (A**2) : -1.16000 REMARK 3 B33 (A**2) : 2.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.404 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.313 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.043 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4936 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4355 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6745 ; 1.232 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10076 ; 1.122 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 623 ; 8.706 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;36.212 ;22.446 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 727 ;17.373 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.670 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 653 ; 0.044 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5615 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1024 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6NPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(220) SIDE BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18309 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 4C4A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.04 M CITRIC ACID, 0.06 REMARK 280 M BIS-TRIS PROPANE, PH 6.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.15250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.09200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.09200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 127.72875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.09200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.09200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.57625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.09200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.09200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 127.72875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.09200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.09200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.57625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.15250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 VAL A 3 REMARK 465 PHE A 4 REMARK 465 CYS A 5 REMARK 465 GLY A 6 REMARK 465 ARG A 7 REMARK 465 ALA A 8 REMARK 465 ASN A 9 REMARK 465 PRO A 10 REMARK 465 THR A 11 REMARK 465 THR A 12 REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 LEU A 15 REMARK 465 GLU A 16 REMARK 465 TRP A 17 REMARK 465 LEU A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 ASP A 21 REMARK 465 GLU A 22 REMARK 465 HIS A 23 REMARK 465 TYR A 24 REMARK 465 ASP A 25 REMARK 465 TYR A 26 REMARK 465 HIS A 27 REMARK 465 GLN A 28 REMARK 465 GLU A 29 REMARK 465 ILE A 30 REMARK 465 ALA A 31 REMARK 465 ASP A 354 REMARK 465 GLU A 355 REMARK 465 ASN A 356 REMARK 465 ASP A 357 REMARK 465 SER A 358 REMARK 465 ALA A 359 REMARK 465 TYR A 360 REMARK 465 LYS A 550 REMARK 465 HIS A 551 REMARK 465 SER A 552 REMARK 465 LEU A 553 REMARK 465 ASP A 554 REMARK 465 PHE A 555 REMARK 465 ARG A 556 REMARK 465 PRO A 632 REMARK 465 ALA A 633 REMARK 465 GLU A 634 REMARK 465 ASP A 635 REMARK 465 LYS A 636 REMARK 465 THR A 655 REMARK 465 LEU A 656 REMARK 465 ASP A 657 REMARK 465 LEU A 658 REMARK 465 ARG A 659 REMARK 465 VAL A 660 REMARK 465 PRO A 661 REMARK 465 LEU A 662 REMARK 465 ASN A 663 REMARK 465 GLY A 664 REMARK 465 PRO A 665 REMARK 465 THR A 690 REMARK 465 LEU A 691 REMARK 465 SER A 692 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 SER A 33 OG REMARK 470 SER A 34 OG REMARK 470 MET A 38 SD CE REMARK 470 HIS A 40 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 65 CD CE NZ REMARK 470 LYS A 97 NZ REMARK 470 LYS A 105 CE NZ REMARK 470 ASP A 114 CG OD1 OD2 REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 LYS A 164 CE NZ REMARK 470 LEU A 205 CG CD1 CD2 REMARK 470 GLU A 207 CD OE1 OE2 REMARK 470 GLN A 208 CD OE1 NE2 REMARK 470 VAL A 209 CG1 CG2 REMARK 470 LYS A 254 CE NZ REMARK 470 ILE A 284 CD1 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 LYS A 293 CD CE NZ REMARK 470 HIS A 313 CG ND1 CD2 CE1 NE2 REMARK 470 TRP A 314 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 314 CZ3 CH2 REMARK 470 ARG A 350 CG CD NE CZ NH1 NH2 REMARK 470 SER A 352 OG REMARK 470 ARG A 363 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 393 CG CD OE1 NE2 REMARK 470 LYS A 451 CD CE NZ REMARK 470 LYS A 470 CD CE NZ REMARK 470 ARG A 531 CG CD NE CZ NH1 NH2 REMARK 470 SER A 532 OG REMARK 470 MET A 545 CE REMARK 470 ASP A 547 CG OD1 OD2 REMARK 470 MET A 548 CG SD CE REMARK 470 ILE A 549 CG1 CG2 CD1 REMARK 470 GLU A 557 N CB CG CD OE1 OE2 REMARK 470 ARG A 559 NE CZ NH1 NH2 REMARK 470 GLU A 560 CG CD OE1 OE2 REMARK 470 ARG A 572 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 576 CG CD CE NZ REMARK 470 GLN A 578 CG CD OE1 NE2 REMARK 470 ILE A 580 CD1 REMARK 470 GLN A 591 CG CD OE1 NE2 REMARK 470 GLN A 592 CD OE1 NE2 REMARK 470 GLN A 595 CG CD OE1 NE2 REMARK 470 LYS A 597 CG CD CE NZ REMARK 470 THR A 599 OG1 CG2 REMARK 470 GLU A 601 CG CD OE1 OE2 REMARK 470 ARG A 604 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 607 CG CD CE NZ REMARK 470 SER A 608 OG REMARK 470 ILE A 630 CD1 REMARK 470 GLY A 637 N REMARK 470 THR A 654 OG1 CG2 REMARK 470 ARG A 666 CG CD NE CZ NH1 NH2 REMARK 470 SER A 667 OG REMARK 470 VAL A 672 CG1 CG2 REMARK 470 LEU A 677 CG CD1 CD2 REMARK 470 GLU A 684 CG CD OE1 OE2 REMARK 470 ARG A 686 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 689 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 40 31.25 -75.85 REMARK 500 LEU A 145 40.04 -99.49 REMARK 500 LEU A 150 -56.90 73.46 REMARK 500 ASP A 170 87.83 65.29 REMARK 500 PRO A 198 118.82 -33.48 REMARK 500 PRO A 223 44.83 -88.92 REMARK 500 ASP A 243 173.97 -57.23 REMARK 500 GLN A 276 -53.77 -132.30 REMARK 500 ALA A 297 132.96 -34.58 REMARK 500 ASP A 312 -62.53 -105.68 REMARK 500 HIS A 313 57.05 -108.84 REMARK 500 TRP A 314 84.49 -163.70 REMARK 500 MET A 315 -148.59 -109.23 REMARK 500 GLN A 329 127.91 -38.04 REMARK 500 ASP A 340 -139.37 -104.14 REMARK 500 TYR A 342 -28.64 -143.29 REMARK 500 GLN A 369 -37.65 82.06 REMARK 500 SER A 409 130.35 174.06 REMARK 500 ASP A 526 -49.98 -140.97 REMARK 500 GLN A 591 29.72 -71.38 REMARK 500 SER A 596 120.67 -175.06 REMARK 500 LEU A 619 -87.04 -66.50 REMARK 500 ASP A 622 24.06 -150.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 KV4 A 701 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 219 SG REMARK 620 2 CYS A 366 SG 112.3 REMARK 620 3 CYS A 368 SG 112.1 105.9 REMARK 620 4 HIS A 371 ND1 111.3 119.4 94.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KV4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 702 DBREF 6NPG A 1 692 UNP Q922X9 ANM7_MOUSE 1 692 SEQRES 1 A 692 MET LYS VAL PHE CYS GLY ARG ALA ASN PRO THR THR GLY SEQRES 2 A 692 SER LEU GLU TRP LEU GLU GLU ASP GLU HIS TYR ASP TYR SEQRES 3 A 692 HIS GLN GLU ILE ALA ARG SER SER TYR ALA ASP MET LEU SEQRES 4 A 692 HIS ASP LYS ASP ARG ASN ILE LYS TYR TYR GLN GLY ILE SEQRES 5 A 692 ARG ALA ALA VAL SER ARG VAL LYS ASP ARG GLY GLN LYS SEQRES 6 A 692 ALA LEU VAL LEU ASP ILE GLY THR GLY THR GLY LEU LEU SEQRES 7 A 692 SER MET MET ALA VAL THR ALA GLY ALA ASP PHE CYS TYR SEQRES 8 A 692 ALA ILE GLU VAL PHE LYS PRO MET ALA GLU ALA ALA VAL SEQRES 9 A 692 LYS ILE VAL GLU ARG ASN GLY PHE SER ASP LYS ILE LYS SEQRES 10 A 692 VAL ILE ASN LYS HIS SER THR GLU VAL THR VAL GLY PRO SEQRES 11 A 692 ASP GLY ASP LEU PRO CYS ARG ALA ASN ILE LEU ILE THR SEQRES 12 A 692 GLU LEU PHE ASP THR GLU LEU ILE GLY GLU GLY ALA LEU SEQRES 13 A 692 PRO SER TYR GLU HIS ALA HIS LYS HIS LEU VAL GLN GLU SEQRES 14 A 692 ASP CYS GLU ALA VAL PRO HIS ARG ALA THR VAL TYR ALA SEQRES 15 A 692 GLN LEU VAL GLU SER ARG ARG MET TRP SER TRP ASN LYS SEQRES 16 A 692 LEU PHE PRO VAL ARG VAL ARG THR SER LEU GLY GLU GLN SEQRES 17 A 692 VAL ILE VAL PRO PRO SER GLU LEU GLU ARG CYS PRO GLY SEQRES 18 A 692 ALA PRO SER VAL CYS ASP ILE GLN LEU ASN GLN VAL SER SEQRES 19 A 692 PRO ALA ASP PHE THR VAL LEU SER ASP VAL LEU PRO MET SEQRES 20 A 692 PHE SER VAL ASP PHE SER LYS GLN VAL SER SER SER ALA SEQRES 21 A 692 ALA CYS HIS SER ARG GLN PHE VAL PRO LEU ALA SER GLY SEQRES 22 A 692 GLN ALA GLN VAL VAL LEU SER TRP TRP ASP ILE GLU MET SEQRES 23 A 692 ASP PRO GLU GLY LYS ILE LYS CYS THR MET ALA PRO PHE SEQRES 24 A 692 TRP ALA GLN THR ASP PRO GLN GLU LEU GLN TRP ARG ASP SEQRES 25 A 692 HIS TRP MET GLN CYS VAL TYR PHE LEU PRO GLN GLU GLU SEQRES 26 A 692 PRO VAL VAL GLN GLY SER PRO ARG CYS LEU VAL ALA HIS SEQRES 27 A 692 HIS ASP ASP TYR CYS VAL TRP TYR SER LEU GLN ARG THR SEQRES 28 A 692 SER PRO ASP GLU ASN ASP SER ALA TYR GLN VAL ARG PRO SEQRES 29 A 692 VAL CYS ASP CYS GLN ALA HIS LEU LEU TRP ASN ARG PRO SEQRES 30 A 692 ARG PHE GLY GLU ILE ASN ASP GLN ASP ARG THR ASP HIS SEQRES 31 A 692 TYR ALA GLN ALA LEU ARG THR VAL LEU LEU PRO GLY SER SEQRES 32 A 692 VAL CYS LEU CYS VAL SER ASP GLY SER LEU LEU SER MET SEQRES 33 A 692 LEU ALA HIS HIS LEU GLY ALA GLU GLN VAL PHE THR VAL SEQRES 34 A 692 GLU SER SER VAL ALA SER TYR ARG LEU MET LYS ARG ILE SEQRES 35 A 692 PHE LYS VAL ASN HIS LEU GLU ASP LYS ILE SER VAL ILE SEQRES 36 A 692 ASN LYS ARG PRO GLU LEU LEU THR ALA ALA ASP LEU GLU SEQRES 37 A 692 GLY LYS LYS VAL SER LEU LEU LEU GLY GLU PRO PHE PHE SEQRES 38 A 692 THR THR SER LEU LEU PRO TRP HIS ASN LEU TYR PHE TRP SEQRES 39 A 692 TYR VAL ARG THR SER VAL ASP GLN HIS LEU ALA PRO GLY SEQRES 40 A 692 ALA VAL VAL MET PRO GLN ALA ALA SER LEU HIS ALA VAL SEQRES 41 A 692 ILE VAL GLU PHE ARG ASP LEU TRP ARG ILE ARG SER PRO SEQRES 42 A 692 CYS GLY ASP CYS GLU GLY PHE ASP VAL HIS ILE MET ASP SEQRES 43 A 692 ASP MET ILE LYS HIS SER LEU ASP PHE ARG GLU SER ARG SEQRES 44 A 692 GLU ALA GLU PRO HIS PRO LEU TRP GLU TYR PRO CYS ARG SEQRES 45 A 692 SER LEU SER LYS PRO GLN GLU ILE LEU THR PHE ASP PHE SEQRES 46 A 692 GLN GLN PRO ILE PRO GLN GLN PRO MET GLN SER LYS GLY SEQRES 47 A 692 THR MET GLU LEU THR ARG PRO GLY LYS SER HIS GLY ALA SEQRES 48 A 692 VAL LEU TRP MET GLU TYR GLN LEU THR PRO ASP SER THR SEQRES 49 A 692 ILE SER THR GLY LEU ILE ASN PRO ALA GLU ASP LYS GLY SEQRES 50 A 692 ASP CYS CYS TRP ASN PRO HIS CYS LYS GLN ALA VAL TYR SEQRES 51 A 692 PHE LEU SER THR THR LEU ASP LEU ARG VAL PRO LEU ASN SEQRES 52 A 692 GLY PRO ARG SER VAL SER TYR VAL VAL GLU PHE HIS PRO SEQRES 53 A 692 LEU THR GLY ASP ILE THR MET GLU PHE ARG LEU ALA ASP SEQRES 54 A 692 THR LEU SER HET KV4 A 701 25 HET ZN A 702 1 HET UNX A 703 1 HET UNX A 704 1 HETNAM KV4 5'-S-(4-{[(4'-CHLORO[1,1'-BIPHENYL]-4-YL) HETNAM 2 KV4 METHYL]AMINO}BUTYL)-5'-THIOADENOSINE HETNAM ZN ZINC ION HETNAM UNX UNKNOWN ATOM OR ION HETSYN KV4 SGC8158 FORMUL 2 KV4 C27 H31 CL N6 O3 S FORMUL 3 ZN ZN 2+ FORMUL 4 UNX 2(X) FORMUL 6 HOH *4(H2 O) HELIX 1 AA1 TYR A 35 HIS A 40 1 6 HELIX 2 AA2 ASP A 41 ARG A 62 1 22 HELIX 3 AA3 GLY A 76 GLY A 86 1 11 HELIX 4 AA4 PHE A 96 ASN A 110 1 15 HELIX 5 AA5 HIS A 122 VAL A 126 5 5 HELIX 6 AA6 GLY A 154 LEU A 166 1 13 HELIX 7 AA7 SER A 187 SER A 192 1 6 HELIX 8 AA8 PRO A 213 ARG A 218 1 6 HELIX 9 AA9 GLN A 229 VAL A 233 5 5 HELIX 10 AB1 PRO A 298 GLN A 302 5 5 HELIX 11 AB2 ASP A 304 LEU A 308 5 5 HELIX 12 AB3 GLN A 369 LEU A 373 5 5 HELIX 13 AB4 ASN A 375 ASN A 383 1 9 HELIX 14 AB5 ASP A 384 LEU A 399 1 16 HELIX 15 AB6 LEU A 413 LEU A 421 1 9 HELIX 16 AB7 SER A 432 ASN A 446 1 15 HELIX 17 AB8 ARG A 458 LEU A 462 5 5 HELIX 18 AB9 LEU A 486 ASN A 490 5 5 HELIX 19 AC1 LEU A 491 VAL A 500 1 10 HELIX 20 AC2 ASP A 526 SER A 532 5 7 HELIX 21 AC3 HIS A 543 ILE A 549 1 7 HELIX 22 AC4 PRO A 565 TYR A 569 5 5 SHEET 1 AA1 5 ILE A 116 ILE A 119 0 SHEET 2 AA1 5 PHE A 89 ILE A 93 1 N ALA A 92 O LYS A 117 SHEET 3 AA1 5 LEU A 67 ILE A 71 1 N ASP A 70 O TYR A 91 SHEET 4 AA1 5 ALA A 138 THR A 143 1 O ILE A 142 N LEU A 69 SHEET 5 AA1 5 VAL A 167 VAL A 174 1 O GLN A 168 N ALA A 138 SHEET 1 AA2 5 CYS A 226 ILE A 228 0 SHEET 2 AA2 5 GLN A 316 VAL A 327 -1 O VAL A 318 N CYS A 226 SHEET 3 AA2 5 GLY A 273 GLU A 285 -1 N ALA A 275 O GLU A 325 SHEET 4 AA2 5 ARG A 177 GLU A 186 -1 N TYR A 181 O TRP A 281 SHEET 5 AA2 5 LEU A 245 ASP A 251 -1 O LEU A 245 N ALA A 182 SHEET 1 AA3 4 THR A 239 VAL A 240 0 SHEET 2 AA3 4 ARG A 177 GLU A 186 -1 N GLU A 186 O THR A 239 SHEET 3 AA3 4 GLY A 273 GLU A 285 -1 O TRP A 281 N TYR A 181 SHEET 4 AA3 4 LYS A 293 THR A 295 -1 O CYS A 294 N ILE A 284 SHEET 1 AA4 2 VAL A 199 THR A 203 0 SHEET 2 AA4 2 GLY A 206 ILE A 210 -1 O GLN A 208 N VAL A 201 SHEET 1 AA5 3 ALA A 261 PHE A 267 0 SHEET 2 AA5 3 ARG A 333 HIS A 339 -1 O LEU A 335 N ARG A 265 SHEET 3 AA5 3 VAL A 344 LEU A 348 -1 O SER A 347 N VAL A 336 SHEET 1 AA6 5 ILE A 452 ILE A 455 0 SHEET 2 AA6 5 GLN A 425 VAL A 429 1 N THR A 428 O SER A 453 SHEET 3 AA6 5 VAL A 404 CYS A 407 1 N CYS A 405 O PHE A 427 SHEET 4 AA6 5 VAL A 472 LEU A 476 1 O LEU A 476 N LEU A 406 SHEET 5 AA6 5 LEU A 504 MET A 511 1 O VAL A 509 N SER A 473 SHEET 1 AA7 5 GLU A 562 HIS A 564 0 SHEET 2 AA7 5 GLN A 647 PHE A 651 -1 O GLN A 647 N HIS A 564 SHEET 3 AA7 5 GLY A 610 GLN A 618 -1 N ALA A 611 O TYR A 650 SHEET 4 AA7 5 ALA A 514 PHE A 524 -1 N VAL A 520 O VAL A 612 SHEET 5 AA7 5 GLN A 578 ASP A 584 -1 O ILE A 580 N LEU A 517 SHEET 1 AA8 4 CYS A 571 SER A 573 0 SHEET 2 AA8 4 ALA A 514 PHE A 524 -1 N GLU A 523 O ARG A 572 SHEET 3 AA8 4 GLY A 610 GLN A 618 -1 O VAL A 612 N VAL A 520 SHEET 4 AA8 4 THR A 624 SER A 626 -1 O ILE A 625 N TYR A 617 SHEET 1 AA9 2 ASP A 536 CYS A 537 0 SHEET 2 AA9 2 PHE A 540 ASP A 541 -1 O PHE A 540 N CYS A 537 SHEET 1 AB1 3 MET A 594 GLU A 601 0 SHEET 2 AB1 3 SER A 667 PHE A 674 -1 O VAL A 668 N MET A 600 SHEET 3 AB1 3 ILE A 681 LEU A 687 -1 O ARG A 686 N SER A 669 LINK SG CYS A 219 ZN ZN A 702 1555 1555 2.29 LINK SG CYS A 366 ZN ZN A 702 1555 1555 2.18 LINK SG CYS A 368 ZN ZN A 702 1555 1555 2.28 LINK ND1 HIS A 371 ZN ZN A 702 1555 1555 2.01 CISPEP 1 VAL A 174 PRO A 175 0 3.87 CISPEP 2 GLU A 478 PRO A 479 0 -7.80 CISPEP 3 MET A 511 PRO A 512 0 11.66 SITE 1 AC1 11 TYR A 35 GLY A 72 GLU A 94 VAL A 95 SITE 2 AC1 11 HIS A 122 SER A 123 LEU A 145 PHE A 146 SITE 3 AC1 11 GLU A 153 SER A 158 HIS A 313 SITE 1 AC2 4 CYS A 219 CYS A 366 CYS A 368 HIS A 371 CRYST1 98.184 98.184 170.305 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005872 0.00000 TER 4785 ASP A 689 HETATM 4786 C8 KV4 A 701 33.048 17.446 68.385 1.00 60.36 C HETATM 4787 C13 KV4 A 701 30.526 15.314 63.099 1.00 94.65 C HETATM 4788 C12 KV4 A 701 30.025 16.748 63.264 1.00 94.04 C HETATM 4789 C11 KV4 A 701 31.111 17.729 63.726 1.00 89.21 C HETATM 4790 C10 KV4 A 701 30.955 18.197 65.165 1.00 82.63 C HETATM 4791 C9 KV4 A 701 32.981 17.195 66.887 1.00 69.05 C HETATM 4792 C14 KV4 A 701 29.880 14.645 60.836 1.00 77.82 C HETATM 4793 C2 KV4 A 701 35.491 21.126 69.832 1.00 53.85 C HETATM 4794 C7 KV4 A 701 31.809 18.013 69.084 1.00 54.02 C HETATM 4795 C6 KV4 A 701 32.155 19.494 69.255 1.00 53.17 C HETATM 4796 C5 KV4 A 701 33.658 19.414 69.501 1.00 55.79 C HETATM 4797 C4 KV4 A 701 34.370 21.307 67.963 1.00 54.50 C HETATM 4798 C3 KV4 A 701 36.069 22.063 68.988 1.00 57.29 C HETATM 4799 N5 KV4 A 701 30.976 15.029 61.732 1.00 90.40 N HETATM 4800 S KV4 A 701 32.524 18.685 65.953 1.00 78.35 S HETATM 4801 O1 KV4 A 701 31.643 17.354 70.332 1.00 54.10 O HETATM 4802 O KV4 A 701 31.477 20.062 70.374 1.00 50.09 O HETATM 4803 O2 KV4 A 701 34.132 18.343 68.707 1.00 58.61 O HETATM 4804 N4 KV4 A 701 34.418 20.613 69.145 1.00 51.99 N HETATM 4805 N2 KV4 A 701 35.909 20.784 71.057 1.00 52.19 N HETATM 4806 C1 KV4 A 701 36.987 21.487 71.406 1.00 55.27 C HETATM 4807 N1 KV4 A 701 37.676 22.386 70.685 1.00 55.77 N HETATM 4808 N3 KV4 A 701 35.338 22.183 67.815 1.00 56.27 N HETATM 4809 C KV4 A 701 37.262 22.671 69.431 1.00 51.77 C HETATM 4810 N KV4 A 701 38.099 23.334 68.625 1.00 40.03 N HETATM 4811 ZN ZN A 702 19.669 36.914 45.694 1.00 59.36 ZN HETATM 4812 UNK UNX A 703 -4.010 25.086 64.394 1.00 50.91 X HETATM 4813 UNK UNX A 704 28.001 10.325 52.157 1.00 30.00 X HETATM 4814 O HOH A 801 38.164 -3.553 67.543 1.00 50.86 O HETATM 4815 O HOH A 802 43.308 24.552 68.840 1.00 30.51 O HETATM 4816 O HOH A 803 42.684 25.212 83.710 1.00 58.54 O HETATM 4817 O HOH A 804 11.593 29.024 52.341 1.00 44.53 O CONECT 1427 4811 CONECT 2503 4811 CONECT 2517 4811 CONECT 2538 4811 CONECT 4786 4791 4794 4803 CONECT 4787 4788 4799 CONECT 4788 4787 4789 CONECT 4789 4788 4790 CONECT 4790 4789 4800 CONECT 4791 4786 4800 CONECT 4792 4799 CONECT 4793 4798 4804 4805 CONECT 4794 4786 4795 4801 CONECT 4795 4794 4796 4802 CONECT 4796 4795 4803 4804 CONECT 4797 4804 4808 CONECT 4798 4793 4808 4809 CONECT 4799 4787 4792 CONECT 4800 4790 4791 CONECT 4801 4794 CONECT 4802 4795 CONECT 4803 4786 4796 CONECT 4804 4793 4796 4797 CONECT 4805 4793 4806 CONECT 4806 4805 4807 CONECT 4807 4806 4809 CONECT 4808 4797 4798 CONECT 4809 4798 4807 4810 CONECT 4810 4809 CONECT 4811 1427 2503 2517 2538 MASTER 464 0 4 22 38 0 4 6 4816 1 30 54 END