HEADER TRANSPORT PROTEIN 18-JAN-19 6NPO TITLE CRYSTAL STRUCTURE OF OLIGOPEPTIDE ABC TRANSPORTER FROM BACILLUS TITLE 2 ANTHRACIS STR. AMES (SUBSTRATE-BINDING DOMAIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGOPEPTIDE ABC TRANSPORTER, OLIGOPEPTIDE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 20-562; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UNKNOWN PEPTIDE LIGAND; COMPND 8 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 GENE: BA_3645, GBAA_3645; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG68; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21(DE3); SOURCE 12 ORGANISM_TAXID: 469008; SOURCE 13 STRAIN: BL21-GOLD(DE3) KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.MICHALSKA,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 15-NOV-23 6NPO 1 REMARK REVDAT 3 11-OCT-23 6NPO 1 LINK REVDAT 2 18-DEC-19 6NPO 1 REMARK REVDAT 1 06-FEB-19 6NPO 0 JRNL AUTH K.MICHALSKA,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF OLIGOPEPTIDE ABC TRANSPORTER FROM JRNL TITL 2 BACILLUS ANTHRACIS STR. AMES (SUBSTRATE-BINDING DOMAIN) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1920 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1300 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4178 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.84000 REMARK 3 B22 (A**2) : -2.27000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.497 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.312 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.242 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.396 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4269 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3949 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5763 ; 1.549 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9248 ; 1.247 ; 1.590 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 520 ; 7.009 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;37.028 ;25.359 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 767 ;15.465 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;10.107 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 537 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4713 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 814 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2086 ; 1.151 ; 2.656 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2086 ; 1.151 ; 2.656 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2604 ; 1.866 ; 3.983 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2605 ; 1.866 ; 3.983 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2183 ; 1.407 ; 2.776 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2184 ; 1.407 ; 2.776 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3160 ; 2.253 ; 4.093 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 18074 ; 4.562 ;50.507 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 18057 ; 4.555 ;50.492 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2896 24.8405 69.2815 REMARK 3 T TENSOR REMARK 3 T11: 0.0110 T22: 0.0453 REMARK 3 T33: 0.0374 T12: -0.0048 REMARK 3 T13: 0.0065 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 3.1981 L22: 1.6097 REMARK 3 L33: 1.3411 L12: 0.5795 REMARK 3 L13: 0.5498 L23: 0.1661 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.0093 S13: 0.0138 REMARK 3 S21: 0.0108 S22: -0.0662 S23: 0.2302 REMARK 3 S31: 0.1089 S32: -0.1368 S33: 0.0528 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 299 A 561 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8773 21.6646 49.6269 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.2888 REMARK 3 T33: 0.0509 T12: -0.0045 REMARK 3 T13: -0.0082 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.0876 L22: 1.4056 REMARK 3 L33: 3.2929 L12: -0.2771 REMARK 3 L13: 0.0183 L23: -0.0860 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: 0.4179 S13: -0.1124 REMARK 3 S21: -0.3932 S22: 0.0091 S23: 0.1450 REMARK 3 S31: 0.2973 S32: 0.2183 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 67 C 70 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7563 26.0545 57.7981 REMARK 3 T TENSOR REMARK 3 T11: 0.5516 T22: 0.1910 REMARK 3 T33: 0.2027 T12: -0.0850 REMARK 3 T13: -0.0459 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.9187 L22: 3.5035 REMARK 3 L33: 5.6854 L12: -2.5893 REMARK 3 L13: 3.2735 L23: -4.3882 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: 0.2885 S13: 0.2510 REMARK 3 S21: 0.0931 S22: -0.3907 S23: -0.3322 REMARK 3 S31: 0.1853 S32: 0.4974 S33: 0.4118 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6NPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19690 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 1.58300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FAJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES/NA PH 7.0, 30% JEFFAMINE REMARK 280 ED-2001 PH 7.0, 5MM LYS-LYS-LYS OLIGOPEPTIDE, CRYO 30% GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.45000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE AUTHORS STATE THAT THE BOUND PEPTIDE WAS CO-PURIFIED, THE REMARK 400 SEQUENCE IS UNKNOWN, AND IT DOES NOT SEEM TO CORRESPOND TO THE KKK REMARK 400 PEPTIDE PRESENT IN THE CRYSTALLIZATION BUFFER. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 17 REMARK 465 ASN A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 CYS A 21 REMARK 465 SER A 22 REMARK 465 THR A 23 REMARK 465 SER A 24 REMARK 465 GLY A 25 REMARK 465 GLY A 26 REMARK 465 ASP A 27 REMARK 465 LYS A 28 REMARK 465 LYS A 29 REMARK 465 THR A 30 REMARK 465 SER A 31 REMARK 465 THR A 32 REMARK 465 ASN A 33 REMARK 465 SER A 34 REMARK 465 SER A 35 REMARK 465 SER A 36 REMARK 465 GLY A 37 REMARK 465 GLY A 38 REMARK 465 ASP A 39 REMARK 465 SER A 40 REMARK 465 LYS A 41 REMARK 465 SER A 42 REMARK 465 GLU A 43 REMARK 465 LYS A 562 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 96 -91.33 -113.65 REMARK 500 LEU A 427 70.52 -114.09 REMARK 500 ASP A 450 60.18 -103.49 REMARK 500 ASP A 452 -63.90 -108.08 REMARK 500 MSE A 481 18.55 -146.01 REMARK 500 SER A 482 29.33 44.31 REMARK 500 THR A 501 -81.81 -84.94 REMARK 500 ASP A 502 78.19 -108.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 90 OE2 REMARK 620 2 ASP A 279 OD2 21.2 REMARK 620 3 HIS A 539 NE2 26.3 6.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP05600 RELATED DB: TARGETTRACK DBREF 6NPO A 20 562 UNP Q81YA8 Q81YA8_BACAN 20 562 DBREF 6NPO C 67 70 PDB 6NPO 6NPO 67 70 SEQADV 6NPO SER A 17 UNP Q81YA8 EXPRESSION TAG SEQADV 6NPO ASN A 18 UNP Q81YA8 EXPRESSION TAG SEQADV 6NPO ALA A 19 UNP Q81YA8 EXPRESSION TAG SEQRES 1 A 546 SER ASN ALA ALA CYS SER THR SER GLY GLY ASP LYS LYS SEQRES 2 A 546 THR SER THR ASN SER SER SER GLY GLY ASP SER LYS SER SEQRES 3 A 546 GLU GLU LYS LEU ALA ALA LYS GLN VAL PHE ASN LYS THR SEQRES 4 A 546 GLU ASN GLN GLU ILE PRO THR MSE ASP THR SER LYS SER SEQRES 5 A 546 THR ASP THR LEU GLY SER GLN ILE LEU GLY ASN THR MSE SEQRES 6 A 546 GLU GLY LEU TYR ARG LEU ASP LYS GLU ASN LYS PRO ILE SEQRES 7 A 546 PRO ALA ALA ALA GLU SER SER THR LYS SER GLU ASP GLY SEQRES 8 A 546 LYS LYS TYR THR PHE LYS LEU ARG LYS ASP ALA LYS TRP SEQRES 9 A 546 SER ASN GLY ASP SER VAL THR ALA LYS ASP PHE VAL PHE SEQRES 10 A 546 ALA TRP GLN ARG LEU LEU ASP PRO LYS THR ALA ALA GLU SEQRES 11 A 546 TYR ALA PHE ILE ALA PHE PRO ILE LYS ASN ALA GLU ALA SEQRES 12 A 546 VAL ASN LYS GLY GLU LYS PRO VAL THR GLU LEU GLY VAL SEQRES 13 A 546 LYS ALA VAL ASP ASP LEU THR LEU GLU VAL GLU LEU GLU SEQRES 14 A 546 GLN ALA VAL PRO TYR PHE LEU ASN LEU VAL ALA PHE PRO SEQRES 15 A 546 SER TYR TYR PRO LEU ASN GLU LYS PHE VAL LYS GLU LYS SEQRES 16 A 546 GLY ASP LYS TYR GLY LEU GLU SER ASP THR THR VAL TYR SEQRES 17 A 546 ASN GLY PRO PHE VAL LEU THR ASP TRP LYS HIS GLU GLN SEQRES 18 A 546 GLY TRP LYS LEU LYS LYS ASN ASP GLN TYR TRP ASP LYS SEQRES 19 A 546 LYS THR VAL LYS LEU ASP GLU ILE ASN TYR SER VAL VAL SEQRES 20 A 546 LYS GLU PRO ALA THR ASN VAL ASN LEU TYR ASP SER GLY SEQRES 21 A 546 GLN ILE ASP PHE SER LEU LEU THR GLY GLU PHE VAL ASP SEQRES 22 A 546 LYS TYR ARG ASN ASN LYS GLU GLU TYR GLY VAL TYR ASN SEQRES 23 A 546 GLU PRO SER THR PHE PHE ILE ARG LEU ASN GLN LYS ARG SEQRES 24 A 546 GLY GLY GLN ASP THR PRO LEU LYS SER LYS LYS LEU ARG SEQRES 25 A 546 GLU ALA ILE ALA LEU SER ILE ASP LYS LYS ASN LEU THR SEQRES 26 A 546 ASN VAL ILE LEU ASN ASP GLY SER LYS PRO ALA ASP TYR SEQRES 27 A 546 LEU VAL PRO LYS GLY LEU ALA ALA GLY PRO ASP GLY LYS SEQRES 28 A 546 ASP PHE GLN GLU THR PHE LYS ASN GLY VAL LYS PRO ASP SEQRES 29 A 546 ALA LYS LYS ALA ALA ALA ALA TRP GLU GLU ALA LYS LYS SEQRES 30 A 546 GLU LEU GLY LYS ASP GLN VAL THR ILE GLU PHE LEU ASN SEQRES 31 A 546 TYR ASP THR GLY ASN ALA LYS LYS VAL GLY GLU TYR VAL SEQRES 32 A 546 LYS ASP GLN ILE GLU LYS ASN LEU LYS GLY VAL THR VAL SEQRES 33 A 546 ASN ILE LYS LEU GLN PRO PHE LYS GLN LYS LEU LYS LEU SEQRES 34 A 546 GLU SER ASP GLN ASP TYR ASP ILE SER TYR GLY GLY TRP SEQRES 35 A 546 SER PRO ASP TYR ALA ASP PRO MSE THR TYR LEU ASP MSE SEQRES 36 A 546 PHE GLU SER LYS HIS SER HIS ASN GLN MSE SER PHE SER SEQRES 37 A 546 ASP GLN LYS TYR ASP GLU ILE ILE LYS LYS ALA GLY GLY SEQRES 38 A 546 GLU LEU MSE THR ASP ALA LYS LYS ARG TRP GLU GLU LEU SEQRES 39 A 546 GLY LYS ALA GLU GLU LEU LEU LEU GLU GLU ASP VAL ALA SEQRES 40 A 546 LEU VAL PRO LEU TYR GLN SER ALA ARG SER TYR VAL MSE SEQRES 41 A 546 LYS PRO HIS VAL LYS GLY VAL VAL LYS HIS ASN ILE SER SEQRES 42 A 546 PRO GLU TYR SER TYR LYS TRP ALA TYR VAL THR GLU LYS SEQRES 1 C 4 UNK UNK UNK UNK MODRES 6NPO MSE A 63 MET MODIFIED RESIDUE MODRES 6NPO MSE A 81 MET MODIFIED RESIDUE MODRES 6NPO MSE A 466 MET MODIFIED RESIDUE MODRES 6NPO MSE A 471 MET MODIFIED RESIDUE MODRES 6NPO MSE A 481 MET MODIFIED RESIDUE MODRES 6NPO MSE A 500 MET MODIFIED RESIDUE MODRES 6NPO MSE A 536 MET MODIFIED RESIDUE HET MSE A 63 8 HET MSE A 81 8 HET MSE A 466 8 HET MSE A 471 8 HET MSE A 481 8 HET MSE A 500 8 HET MSE A 536 8 HET ZN A 601 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *62(H2 O) HELIX 1 AA1 ASP A 70 MSE A 81 1 12 HELIX 2 AA2 ALA A 128 ASP A 140 1 13 HELIX 3 AA3 PRO A 141 ALA A 144 5 4 HELIX 4 AA4 TYR A 147 PHE A 152 5 6 HELIX 5 AA5 ASN A 156 GLY A 163 1 8 HELIX 6 AA6 PRO A 166 LEU A 170 5 5 HELIX 7 AA7 TYR A 190 VAL A 195 1 6 HELIX 8 AA8 ALA A 196 TYR A 201 5 6 HELIX 9 AA9 ASN A 204 GLY A 212 1 9 HELIX 10 AB1 ASP A 213 TYR A 215 5 3 HELIX 11 AB2 GLU A 218 THR A 222 5 5 HELIX 12 AB3 GLU A 265 SER A 275 1 11 HELIX 13 AB4 THR A 284 ARG A 292 5 9 HELIX 14 AB5 PRO A 321 LYS A 323 5 3 HELIX 15 AB6 SER A 324 SER A 334 1 11 HELIX 16 AB7 ASP A 336 VAL A 343 1 8 HELIX 17 AB8 ASP A 368 LYS A 374 1 7 HELIX 18 AB9 ASP A 380 GLY A 396 1 17 HELIX 19 AC1 THR A 409 LEU A 427 1 19 HELIX 20 AC2 PRO A 438 ASP A 448 1 11 HELIX 21 AC3 PRO A 465 ASP A 470 1 6 HELIX 22 AC4 MSE A 471 GLU A 473 5 3 HELIX 23 AC5 ASP A 485 GLU A 498 1 14 HELIX 24 AC6 ASP A 502 GLU A 519 1 18 SHEET 1 AA1 4 VAL A 51 GLU A 56 0 SHEET 2 AA1 4 GLU A 257 VAL A 262 1 O ASN A 259 N LYS A 54 SHEET 3 AA1 4 GLY A 238 LYS A 243 -1 N LEU A 241 O ILE A 258 SHEET 4 AA1 4 PHE A 228 LYS A 234 -1 N THR A 231 O LYS A 240 SHEET 1 AA2 2 TYR A 85 LEU A 87 0 SHEET 2 AA2 2 PRO A 93 PRO A 95 -1 O ILE A 94 N ARG A 86 SHEET 1 AA3 4 ALA A 98 LYS A 103 0 SHEET 2 AA3 4 LYS A 109 LEU A 114 -1 O LYS A 113 N GLU A 99 SHEET 3 AA3 4 THR A 179 GLU A 183 -1 O LEU A 180 N PHE A 112 SHEET 4 AA3 4 VAL A 172 ASP A 176 -1 N LYS A 173 O GLU A 181 SHEET 1 AA4 6 PHE A 280 LEU A 283 0 SHEET 2 AA4 6 LEU A 524 MSE A 536 -1 O SER A 533 N LEU A 283 SHEET 3 AA4 6 TYR A 298 LEU A 311 -1 N TYR A 301 O ARG A 532 SHEET 4 AA4 6 ILE A 453 TRP A 458 -1 O SER A 454 N ARG A 310 SHEET 5 AA4 6 VAL A 400 TYR A 407 1 N LEU A 405 O ILE A 453 SHEET 6 AA4 6 VAL A 430 GLN A 437 1 O THR A 431 N VAL A 400 SHEET 1 AA5 5 LYS A 350 PRO A 351 0 SHEET 2 AA5 5 LEU A 524 MSE A 536 -1 O GLN A 529 N LYS A 350 SHEET 3 AA5 5 TYR A 298 LEU A 311 -1 N TYR A 301 O ARG A 532 SHEET 4 AA5 5 ILE A 453 TRP A 458 -1 O SER A 454 N ARG A 310 SHEET 5 AA5 5 UNK C 68 UNK C 69 -1 O UNK C 69 N GLY A 457 SHEET 1 AA6 2 LYS A 314 ARG A 315 0 SHEET 2 AA6 2 GLN A 318 ASP A 319 -1 O GLN A 318 N ARG A 315 SHEET 1 AA7 2 VAL A 540 LYS A 541 0 SHEET 2 AA7 2 TYR A 558 VAL A 559 -1 O TYR A 558 N LYS A 541 SHEET 1 AA8 2 VAL A 544 LYS A 545 0 SHEET 2 AA8 2 TYR A 552 SER A 553 -1 O SER A 553 N VAL A 544 LINK C THR A 62 N MSE A 63 1555 1555 1.34 LINK C MSE A 63 N ASP A 64 1555 1555 1.33 LINK C THR A 80 N MSE A 81 1555 1555 1.33 LINK C MSE A 81 N GLU A 82 1555 1555 1.34 LINK C PRO A 465 N MSE A 466 1555 1555 1.34 LINK C MSE A 466 N THR A 467 1555 1555 1.35 LINK C ASP A 470 N MSE A 471 1555 1555 1.34 LINK C MSE A 471 N PHE A 472 1555 1555 1.34 LINK C GLN A 480 N MSE A 481 1555 1555 1.34 LINK C MSE A 481 N SER A 482 1555 1555 1.35 LINK C LEU A 499 N MSE A 500 1555 1555 1.33 LINK C MSE A 500 N THR A 501 1555 1555 1.34 LINK C VAL A 535 N MSE A 536 1555 1555 1.35 LINK C MSE A 536 N LYS A 537 1555 1555 1.34 LINK OE2 GLU A 90 ZN ZN A 601 1555 2747 2.10 LINK OD2 ASP A 279 ZN ZN A 601 1555 1555 1.78 LINK NE2 HIS A 539 ZN ZN A 601 1555 1555 1.96 CISPEP 1 SER A 549 PRO A 550 0 4.03 SITE 1 AC1 2 ASP A 279 HIS A 539 CRYST1 56.542 54.900 82.917 90.00 106.21 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017686 0.000000 0.005140 0.00000 SCALE2 0.000000 0.018215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012559 0.00000