HEADER LYASE 18-JAN-19 6NPQ TITLE PSEUDOMONAS FLUORESCENS ISOCYANIDE HYDRATASE AT 298 K XFEL DATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISONITRILE HYDRATASE INHA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS (STRAIN ATCC BAA-477 / SOURCE 3 NRRL B-23932 / PF-5); SOURCE 4 ORGANISM_TAXID: 220664; SOURCE 5 STRAIN: ATCC BAA-477 / NRRL B-23932 / PF-5; SOURCE 6 ATCC: BAA-477D; SOURCE 7 GENE: INHA, PFL_4109; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS THIJ/PFPI, DJ-1 SUPERFAMILY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.DASGUPTA,H.VAN DEN BEDEM,M.A.WILSON REVDAT 4 11-OCT-23 6NPQ 1 REMARK REVDAT 3 01-JAN-20 6NPQ 1 JRNL REVDAT 2 18-DEC-19 6NPQ 1 JRNL REVDAT 1 20-NOV-19 6NPQ 0 JRNL AUTH M.DASGUPTA,D.BUDDAY,S.H.P.DE OLIVEIRA,P.MADZELAN, JRNL AUTH 2 D.MARCHANY-RIVERA,J.SERAVALLI,B.HAYES,R.G.SIERRA,S.BOUTET, JRNL AUTH 3 M.S.HUNTER,R.ALONSO-MORI,A.BATYUK,J.WIERMAN,A.LYUBIMOV, JRNL AUTH 4 A.S.BREWSTER,N.K.SAUTER,G.A.APPLEGATE,V.K.TIWARI, JRNL AUTH 5 D.B.BERKOWITZ,M.C.THOMPSON,A.E.COHEN,J.S.FRASER,M.E.WALL, JRNL AUTH 6 H.VAN DEN BEDEM,M.A.WILSON JRNL TITL MIX-AND-INJECT XFEL CRYSTALLOGRAPHY REVEALS GATED JRNL TITL 2 CONFORMATIONAL DYNAMICS DURING ENZYME CATALYSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 25634 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31801874 JRNL DOI 10.1073/PNAS.1901864116 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.360 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.1300 - 3.7300 1.00 4218 150 0.1293 0.1504 REMARK 3 2 3.7300 - 2.9600 1.00 4164 146 0.1384 0.1771 REMARK 3 3 2.9600 - 2.5900 1.00 4119 142 0.1539 0.1718 REMARK 3 4 2.5900 - 2.3500 1.00 4120 148 0.1494 0.1846 REMARK 3 5 2.3500 - 2.1800 1.00 4127 138 0.1448 0.1596 REMARK 3 6 2.1800 - 2.0600 1.00 4111 146 0.1569 0.1788 REMARK 3 7 2.0600 - 1.9500 1.00 4106 135 0.1705 0.1895 REMARK 3 8 1.9500 - 1.8700 1.00 4088 147 0.1770 0.2190 REMARK 3 9 1.8700 - 1.8000 1.00 4130 132 0.1916 0.2390 REMARK 3 10 1.8000 - 1.7300 1.00 4090 147 0.2095 0.2408 REMARK 3 11 1.7300 - 1.6800 1.00 4079 142 0.2234 0.2491 REMARK 3 12 1.6800 - 1.6300 1.00 4086 142 0.2448 0.2758 REMARK 3 13 1.6300 - 1.5900 1.00 4109 143 0.2769 0.3194 REMARK 3 14 1.5900 - 1.5500 0.99 4079 144 0.3110 0.3319 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.203 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.374 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3558 REMARK 3 ANGLE : 0.777 4883 REMARK 3 CHIRALITY : 0.048 574 REMARK 3 PLANARITY : 0.005 654 REMARK 3 DIHEDRAL : 12.892 2143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9703 21.6743 16.7027 REMARK 3 T TENSOR REMARK 3 T11: 0.1162 T22: 0.1451 REMARK 3 T33: 0.1374 T12: -0.0114 REMARK 3 T13: -0.0116 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 2.3584 L22: 3.0713 REMARK 3 L33: 2.1609 L12: -0.4967 REMARK 3 L13: -0.9030 L23: 0.4803 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: 0.3290 S13: 0.1011 REMARK 3 S21: -0.1864 S22: 0.0308 S23: 0.1575 REMARK 3 S31: -0.0989 S32: -0.1875 S33: -0.0676 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4821 30.0399 23.5409 REMARK 3 T TENSOR REMARK 3 T11: 0.1883 T22: 0.0954 REMARK 3 T33: 0.1494 T12: -0.0104 REMARK 3 T13: -0.0007 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 7.9192 L22: 1.2273 REMARK 3 L33: 3.6372 L12: -0.4666 REMARK 3 L13: 0.3122 L23: -1.9726 REMARK 3 S TENSOR REMARK 3 S11: 0.1125 S12: 0.1350 S13: 0.4530 REMARK 3 S21: 0.1345 S22: -0.0299 S23: 0.0083 REMARK 3 S31: -0.3282 S32: -0.0418 S33: -0.0744 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0171 24.7573 26.0977 REMARK 3 T TENSOR REMARK 3 T11: 0.1405 T22: 0.1428 REMARK 3 T33: 0.1803 T12: 0.0363 REMARK 3 T13: 0.0001 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.0846 L22: 1.7893 REMARK 3 L33: 1.7699 L12: 1.1894 REMARK 3 L13: -0.8021 L23: -0.2286 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: 0.1152 S13: 0.2359 REMARK 3 S21: 0.0475 S22: 0.0840 S23: 0.3152 REMARK 3 S31: -0.2746 S32: -0.1833 S33: -0.0698 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8702 24.6864 27.0874 REMARK 3 T TENSOR REMARK 3 T11: 0.1354 T22: 0.2613 REMARK 3 T33: 0.2109 T12: 0.0416 REMARK 3 T13: 0.0219 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 6.2340 L22: 8.1934 REMARK 3 L33: 8.3493 L12: 2.6080 REMARK 3 L13: 2.8883 L23: 5.4516 REMARK 3 S TENSOR REMARK 3 S11: -0.0355 S12: 0.2688 S13: 0.2005 REMARK 3 S21: -0.1619 S22: -0.0466 S23: 0.3837 REMARK 3 S31: -0.3457 S32: -0.7572 S33: 0.1088 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6087 12.6675 29.4964 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.1509 REMARK 3 T33: 0.1447 T12: -0.0208 REMARK 3 T13: 0.0026 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.7117 L22: 3.1902 REMARK 3 L33: 2.3926 L12: -0.2826 REMARK 3 L13: -0.6601 L23: -0.1803 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: 0.0719 S13: -0.0356 REMARK 3 S21: 0.0812 S22: 0.0075 S23: 0.2379 REMARK 3 S31: 0.1144 S32: -0.2305 S33: 0.0077 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0939 6.9800 29.3206 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.1290 REMARK 3 T33: 0.1775 T12: -0.0247 REMARK 3 T13: 0.0149 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 3.6149 L22: 2.2612 REMARK 3 L33: 2.0254 L12: 0.1540 REMARK 3 L13: -1.4604 L23: -0.4806 REMARK 3 S TENSOR REMARK 3 S11: -0.1099 S12: 0.0813 S13: -0.0397 REMARK 3 S21: -0.0055 S22: 0.0217 S23: 0.2084 REMARK 3 S31: 0.1850 S32: -0.1082 S33: 0.0607 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0742 10.3020 15.6035 REMARK 3 T TENSOR REMARK 3 T11: 0.1740 T22: 0.2021 REMARK 3 T33: 0.1839 T12: -0.0095 REMARK 3 T13: 0.0053 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 8.3561 L22: 3.4983 REMARK 3 L33: 3.5859 L12: -2.0890 REMARK 3 L13: 5.3994 L23: -1.2531 REMARK 3 S TENSOR REMARK 3 S11: -0.0489 S12: -0.1095 S13: -0.0362 REMARK 3 S21: -0.0767 S22: -0.0267 S23: 0.3364 REMARK 3 S31: 0.0320 S32: -0.4142 S33: 0.0647 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6543 9.8290 4.1518 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.2419 REMARK 3 T33: 0.2245 T12: -0.0377 REMARK 3 T13: -0.0465 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.2954 L22: 1.0953 REMARK 3 L33: 2.2593 L12: -1.5631 REMARK 3 L13: -1.4933 L23: 0.9745 REMARK 3 S TENSOR REMARK 3 S11: 0.0959 S12: 0.1436 S13: 0.0641 REMARK 3 S21: -0.2921 S22: -0.0492 S23: 0.2619 REMARK 3 S31: -0.0073 S32: -0.2922 S33: -0.0804 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9196 2.9350 26.4268 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.1350 REMARK 3 T33: 0.1907 T12: 0.0138 REMARK 3 T13: -0.0039 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.5562 L22: 1.3914 REMARK 3 L33: 6.7753 L12: -0.8960 REMARK 3 L13: 1.2257 L23: -2.0952 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: -0.1321 S13: -0.0638 REMARK 3 S21: 0.0424 S22: 0.0806 S23: -0.0261 REMARK 3 S31: 0.1471 S32: 0.0638 S33: -0.0158 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3780 15.8849 42.8558 REMARK 3 T TENSOR REMARK 3 T11: 0.2798 T22: 0.1968 REMARK 3 T33: 0.1605 T12: 0.0008 REMARK 3 T13: 0.0045 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.9981 L22: 6.9136 REMARK 3 L33: 4.6959 L12: -4.4843 REMARK 3 L13: -1.2887 L23: 0.9528 REMARK 3 S TENSOR REMARK 3 S11: -0.0433 S12: -0.2481 S13: 0.0753 REMARK 3 S21: 0.4031 S22: 0.1213 S23: 0.0200 REMARK 3 S31: 0.2322 S32: -0.1104 S33: -0.0616 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -2 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0880 23.3639 16.0588 REMARK 3 T TENSOR REMARK 3 T11: 0.2073 T22: 0.1636 REMARK 3 T33: 0.1745 T12: -0.0167 REMARK 3 T13: -0.0017 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 6.3241 L22: 3.8731 REMARK 3 L33: 2.0999 L12: -0.3633 REMARK 3 L13: 0.9396 L23: -0.8270 REMARK 3 S TENSOR REMARK 3 S11: -0.1759 S12: -0.4459 S13: 0.0560 REMARK 3 S21: 0.3219 S22: 0.0539 S23: -0.3852 REMARK 3 S31: -0.2681 S32: 0.0766 S33: 0.2005 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6328 19.1425 19.4309 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.2073 REMARK 3 T33: 0.1500 T12: 0.0034 REMARK 3 T13: -0.0124 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.1755 L22: 4.6260 REMARK 3 L33: 2.7563 L12: 0.7365 REMARK 3 L13: -1.7615 L23: -1.0653 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: -0.3588 S13: -0.1242 REMARK 3 S21: 0.2918 S22: -0.1085 S23: -0.2627 REMARK 3 S31: -0.0273 S32: 0.2717 S33: 0.0924 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5167 30.9018 11.6714 REMARK 3 T TENSOR REMARK 3 T11: 0.2301 T22: 0.1148 REMARK 3 T33: 0.1697 T12: 0.0072 REMARK 3 T13: -0.0052 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 8.1981 L22: 1.8908 REMARK 3 L33: 5.0657 L12: 0.1743 REMARK 3 L13: 1.2101 L23: 1.8480 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: -0.3913 S13: 0.4432 REMARK 3 S21: -0.1235 S22: 0.1095 S23: -0.0224 REMARK 3 S31: -0.4906 S32: 0.0420 S33: -0.0960 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8120 22.7416 7.1476 REMARK 3 T TENSOR REMARK 3 T11: 0.1411 T22: 0.1375 REMARK 3 T33: 0.1683 T12: -0.0107 REMARK 3 T13: 0.0159 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.7509 L22: 2.0804 REMARK 3 L33: 2.1954 L12: 0.4036 REMARK 3 L13: -0.4479 L23: 0.0755 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: -0.1464 S13: 0.1045 REMARK 3 S21: -0.1056 S22: -0.0458 S23: -0.2091 REMARK 3 S31: -0.1584 S32: 0.2009 S33: 0.0306 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8898 11.1892 0.4499 REMARK 3 T TENSOR REMARK 3 T11: 0.2033 T22: 0.1620 REMARK 3 T33: 0.2327 T12: 0.0401 REMARK 3 T13: 0.0618 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.9525 L22: 5.0984 REMARK 3 L33: 1.8744 L12: -0.4324 REMARK 3 L13: 0.1608 L23: 0.3112 REMARK 3 S TENSOR REMARK 3 S11: -0.1836 S12: -0.0023 S13: -0.5512 REMARK 3 S21: -0.2914 S22: 0.0020 S23: -0.7548 REMARK 3 S31: 0.1787 S32: 0.2407 S33: 0.1955 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4001 8.0334 1.3273 REMARK 3 T TENSOR REMARK 3 T11: 0.2296 T22: 0.1389 REMARK 3 T33: 0.2286 T12: 0.0248 REMARK 3 T13: 0.0590 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 3.5487 L22: 1.4799 REMARK 3 L33: 1.6598 L12: 0.5674 REMARK 3 L13: -1.5142 L23: 0.4172 REMARK 3 S TENSOR REMARK 3 S11: -0.1458 S12: 0.1051 S13: -0.3164 REMARK 3 S21: -0.1896 S22: 0.0368 S23: -0.2591 REMARK 3 S31: 0.2250 S32: 0.0356 S33: 0.0735 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 152 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7001 7.6481 20.6123 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: 0.1634 REMARK 3 T33: 0.1963 T12: 0.0227 REMARK 3 T13: -0.0065 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 2.4146 L22: 2.0355 REMARK 3 L33: 3.3058 L12: 0.0146 REMARK 3 L13: -0.1389 L23: -1.6216 REMARK 3 S TENSOR REMARK 3 S11: -0.0684 S12: -0.1850 S13: -0.1423 REMARK 3 S21: 0.0617 S22: -0.1392 S23: -0.3026 REMARK 3 S31: 0.0431 S32: 0.4231 S33: 0.1830 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6055 5.0198 3.6336 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.1424 REMARK 3 T33: 0.1509 T12: -0.0011 REMARK 3 T13: -0.0130 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.5358 L22: 1.5370 REMARK 3 L33: 7.2846 L12: 0.5797 REMARK 3 L13: 0.2444 L23: -0.0839 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: 0.2513 S13: -0.0550 REMARK 3 S21: -0.3949 S22: 0.0625 S23: 0.0242 REMARK 3 S31: 0.4364 S32: -0.1341 S33: 0.0034 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 208 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5615 20.0381 -10.1092 REMARK 3 T TENSOR REMARK 3 T11: 0.3216 T22: 0.2062 REMARK 3 T33: 0.1401 T12: -0.0329 REMARK 3 T13: 0.0376 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 9.5639 L22: 6.3418 REMARK 3 L33: 4.7683 L12: 3.7526 REMARK 3 L13: 0.5702 L23: -0.0031 REMARK 3 S TENSOR REMARK 3 S11: -0.3093 S12: 0.5469 S13: 0.0884 REMARK 3 S21: -0.5184 S22: 0.3227 S23: 0.0890 REMARK 3 S31: -0.1995 S32: 0.0254 S33: 0.0060 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NPQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX340-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CCTBX.PRIME REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60075 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 20.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 50.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 60.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3NON REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31% PEG 3350, 250 MM MGCL2, 125 MM REMARK 280 TRIS-HCL, 2 MM DTT, PH 8.8, BATCH MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.83850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 228 REMARK 465 GLY B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 138 O HOH A 301 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 12 OG SER B 198 2555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 101 -137.65 58.98 REMARK 500 ILE A 152 -78.79 7.99 REMARK 500 PHE A 167 -104.08 -120.32 REMARK 500 ASP B 30 60.59 39.94 REMARK 500 CYS B 101 -136.97 57.63 REMARK 500 ILE B 152 -80.68 12.32 REMARK 500 PHE B 167 -100.48 -120.88 REMARK 500 ALA B 226 57.91 -99.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 6NPQ A 1 228 UNP Q4K977 Q4K977_PSEF5 1 228 DBREF 6NPQ B 1 228 UNP Q4K977 Q4K977_PSEF5 1 228 SEQADV 6NPQ GLY A -2 UNP Q4K977 EXPRESSION TAG SEQADV 6NPQ SER A -1 UNP Q4K977 EXPRESSION TAG SEQADV 6NPQ HIS A 0 UNP Q4K977 EXPRESSION TAG SEQADV 6NPQ GLY B -2 UNP Q4K977 EXPRESSION TAG SEQADV 6NPQ SER B -1 UNP Q4K977 EXPRESSION TAG SEQADV 6NPQ HIS B 0 UNP Q4K977 EXPRESSION TAG SEQRES 1 A 231 GLY SER HIS MET ALA VAL GLN ILE GLY PHE LEU LEU PHE SEQRES 2 A 231 PRO GLU VAL GLN GLN LEU ASP LEU THR GLY PRO HIS ASP SEQRES 3 A 231 VAL LEU ALA SER LEU PRO ASP VAL GLN VAL HIS LEU ILE SEQRES 4 A 231 TRP LYS GLU PRO GLY PRO VAL VAL ALA SER SER GLY LEU SEQRES 5 A 231 VAL LEU GLN ALA THR THR SER PHE ALA ASP CYS PRO PRO SEQRES 6 A 231 LEU ASP VAL ILE CYS ILE PRO GLY GLY THR GLY VAL GLY SEQRES 7 A 231 ALA LEU MET GLU ASP PRO GLN ALA LEU ALA PHE ILE ARG SEQRES 8 A 231 GLN GLN ALA ALA ARG ALA ARG TYR VAL THR SER VAL CYS SEQRES 9 A 231 THR GLY SER LEU VAL LEU GLY ALA ALA GLY LEU LEU GLN SEQRES 10 A 231 GLY LYS ARG ALA THR THR HIS TRP ALA TYR HIS GLU LEU SEQRES 11 A 231 LEU ALA PRO LEU GLY ALA ILE PRO VAL HIS GLU ARG VAL SEQRES 12 A 231 VAL ARG ASP GLY ASN LEU LEU THR GLY GLY GLY ILE THR SEQRES 13 A 231 ALA GLY ILE ASP PHE ALA LEU THR LEU ALA ALA GLU LEU SEQRES 14 A 231 PHE ASP ALA ALA THR ALA GLN ARG VAL GLN LEU GLN LEU SEQRES 15 A 231 GLU TYR ALA PRO ALA PRO PRO PHE ASN ALA GLY SER PRO SEQRES 16 A 231 ASP THR ALA PRO ALA SER VAL VAL GLN GLN ALA ARG GLN SEQRES 17 A 231 ARG ALA ALA ASP SER LEU HIS LYS ARG ARG GLU ILE THR SEQRES 18 A 231 LEU ARG ALA ALA ALA ARG LEU ALA ALA GLY SEQRES 1 B 231 GLY SER HIS MET ALA VAL GLN ILE GLY PHE LEU LEU PHE SEQRES 2 B 231 PRO GLU VAL GLN GLN LEU ASP LEU THR GLY PRO HIS ASP SEQRES 3 B 231 VAL LEU ALA SER LEU PRO ASP VAL GLN VAL HIS LEU ILE SEQRES 4 B 231 TRP LYS GLU PRO GLY PRO VAL VAL ALA SER SER GLY LEU SEQRES 5 B 231 VAL LEU GLN ALA THR THR SER PHE ALA ASP CYS PRO PRO SEQRES 6 B 231 LEU ASP VAL ILE CYS ILE PRO GLY GLY THR GLY VAL GLY SEQRES 7 B 231 ALA LEU MET GLU ASP PRO GLN ALA LEU ALA PHE ILE ARG SEQRES 8 B 231 GLN GLN ALA ALA ARG ALA ARG TYR VAL THR SER VAL CYS SEQRES 9 B 231 THR GLY SER LEU VAL LEU GLY ALA ALA GLY LEU LEU GLN SEQRES 10 B 231 GLY LYS ARG ALA THR THR HIS TRP ALA TYR HIS GLU LEU SEQRES 11 B 231 LEU ALA PRO LEU GLY ALA ILE PRO VAL HIS GLU ARG VAL SEQRES 12 B 231 VAL ARG ASP GLY ASN LEU LEU THR GLY GLY GLY ILE THR SEQRES 13 B 231 ALA GLY ILE ASP PHE ALA LEU THR LEU ALA ALA GLU LEU SEQRES 14 B 231 PHE ASP ALA ALA THR ALA GLN ARG VAL GLN LEU GLN LEU SEQRES 15 B 231 GLU TYR ALA PRO ALA PRO PRO PHE ASN ALA GLY SER PRO SEQRES 16 B 231 ASP THR ALA PRO ALA SER VAL VAL GLN GLN ALA ARG GLN SEQRES 17 B 231 ARG ALA ALA ASP SER LEU HIS LYS ARG ARG GLU ILE THR SEQRES 18 B 231 LEU ARG ALA ALA ALA ARG LEU ALA ALA GLY FORMUL 3 HOH *298(H2 O) HELIX 1 AA1 GLN A 14 ALA A 26 1 13 HELIX 2 AA2 GLY A 73 MET A 78 1 6 HELIX 3 AA3 ASP A 80 ALA A 94 1 15 HELIX 4 AA4 THR A 102 ALA A 110 1 9 HELIX 5 AA5 HIS A 121 GLY A 132 5 12 HELIX 6 AA6 THR A 153 PHE A 167 1 15 HELIX 7 AA7 ASP A 168 LEU A 179 1 12 HELIX 8 AA8 PRO A 196 ALA A 227 1 32 HELIX 9 AA9 GLN B 14 ALA B 26 1 13 HELIX 10 AB1 GLY B 73 MET B 78 1 6 HELIX 11 AB2 ASP B 80 ALA B 94 1 15 HELIX 12 AB3 THR B 102 ALA B 110 1 9 HELIX 13 AB4 HIS B 121 GLY B 132 5 12 HELIX 14 AB5 THR B 153 PHE B 167 1 15 HELIX 15 AB6 ASP B 168 LEU B 179 1 12 HELIX 16 AB7 PRO B 196 ALA B 226 1 31 SHEET 1 AA1 7 THR A 55 SER A 56 0 SHEET 2 AA1 7 VAL A 31 TRP A 37 1 N TRP A 37 O THR A 55 SHEET 3 AA1 7 VAL A 3 LEU A 8 1 N PHE A 7 O ILE A 36 SHEET 4 AA1 7 VAL A 65 ILE A 68 1 O VAL A 65 N GLY A 6 SHEET 5 AA1 7 TYR A 96 VAL A 100 1 O THR A 98 N ILE A 66 SHEET 6 AA1 7 LEU A 146 GLY A 149 1 O LEU A 147 N VAL A 97 SHEET 7 AA1 7 VAL A 140 ASP A 143 -1 N ASP A 143 O LEU A 146 SHEET 1 AA2 2 GLY A 41 VAL A 44 0 SHEET 2 AA2 2 VAL A 50 ALA A 53 -1 O ALA A 53 N GLY A 41 SHEET 1 AA3 2 ARG A 117 ALA A 118 0 SHEET 2 AA3 2 ILE A 134 PRO A 135 1 O ILE A 134 N ALA A 118 SHEET 1 AA4 7 THR B 55 SER B 56 0 SHEET 2 AA4 7 VAL B 31 TRP B 37 1 N TRP B 37 O THR B 55 SHEET 3 AA4 7 VAL B 3 LEU B 8 1 N ILE B 5 O HIS B 34 SHEET 4 AA4 7 VAL B 65 ILE B 68 1 O VAL B 65 N GLY B 6 SHEET 5 AA4 7 TYR B 96 VAL B 100 1 O THR B 98 N ILE B 66 SHEET 6 AA4 7 LEU B 146 GLY B 149 1 O LEU B 147 N VAL B 97 SHEET 7 AA4 7 VAL B 140 ASP B 143 -1 N ASP B 143 O LEU B 146 SHEET 1 AA5 2 GLY B 41 VAL B 44 0 SHEET 2 AA5 2 VAL B 50 ALA B 53 -1 O ALA B 53 N GLY B 41 SHEET 1 AA6 2 ARG B 117 ALA B 118 0 SHEET 2 AA6 2 ILE B 134 PRO B 135 1 O ILE B 134 N ALA B 118 CRYST1 56.879 57.677 68.778 90.00 112.74 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017581 0.000000 0.007369 0.00000 SCALE2 0.000000 0.017338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015765 0.00000