HEADER TRANSFERASE 18-JAN-19 6NPZ TITLE CRYSTAL STRUCTURE OF AKT1 (AA 123-480) KINASE WITH A BISUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAC-ALPHA SERINE/THREONINE-PROTEIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 123-480; COMPND 5 SYNONYM: PROTEIN KINASE B,PKB,PROTEIN KINASE B ALPHA,PKB ALPHA,PROTO- COMPND 6 ONCOGENE C-AKT,RAC-PK-ALPHA; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: BISUBSTRATE; COMPND 11 CHAIN: F, G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKT1, PKB, RAC; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS AKT1, RAC-ALPHA SERINE/THERONINE-PROTEIN KINASE, KINASE, BISUBSTRATE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.CHU,P.A.COLE,S.B.GABELLI REVDAT 4 15-NOV-23 6NPZ 1 LINK REVDAT 3 11-OCT-23 6NPZ 1 LINK REVDAT 2 04-DEC-19 6NPZ 1 REMARK REVDAT 1 30-JAN-19 6NPZ 0 SPRSDE 30-JAN-19 6NPZ 6C0I JRNL AUTH N.CHU,A.L.SALGUERO,A.Z.LIU,Z.CHEN,D.R.DEMPSEY,S.B.FICARRO, JRNL AUTH 2 W.M.ALEXANDER,J.A.MARTO,Y.LI,L.M.AMZEL,S.B.GABELLI,P.A.COLE JRNL TITL AKT KINASE ACTIVATION MECHANISMS REVEALED USING PROTEIN JRNL TITL 2 SEMISYNTHESIS. JRNL REF CELL V. 174 897 2018 JRNL REFN ISSN 1097-4172 JRNL PMID 30078705 JRNL DOI 10.1016/J.CELL.2018.07.003 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 45932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2364 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 475 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.72000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.353 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6NPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99958 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48316 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 29.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.72100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 6BUU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% PEG3350, 0.1 M HEPES-HCL, 0.2 M REMARK 280 AMMONIUM ACETATE, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.04400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 123 REMARK 465 SER A 124 REMARK 465 PRO A 125 REMARK 465 SER A 126 REMARK 465 ASP A 127 REMARK 465 ASN A 128 REMARK 465 SER A 129 REMARK 465 GLY A 130 REMARK 465 ALA A 131 REMARK 465 GLU A 132 REMARK 465 GLU A 133 REMARK 465 MET A 134 REMARK 465 GLU A 135 REMARK 465 VAL A 136 REMARK 465 SER A 137 REMARK 465 LEU A 138 REMARK 465 ALA A 139 REMARK 465 LYS A 140 REMARK 465 PRO A 141 REMARK 465 THR A 450 REMARK 465 PRO A 451 REMARK 465 PRO A 452 REMARK 465 ASP A 453 REMARK 465 GLN A 454 REMARK 465 ASP A 455 REMARK 465 ASP A 456 REMARK 465 SER A 457 REMARK 465 MET A 458 REMARK 465 GLU A 459 REMARK 465 CYS A 460 REMARK 465 VAL A 461 REMARK 465 ASP A 462 REMARK 465 SER A 463 REMARK 465 GLU A 464 REMARK 465 THR A 479 REMARK 465 ALA A 480 REMARK 465 GLY B 123 REMARK 465 SER B 124 REMARK 465 PRO B 125 REMARK 465 SER B 126 REMARK 465 ASP B 127 REMARK 465 ASN B 128 REMARK 465 SER B 129 REMARK 465 GLY B 130 REMARK 465 ALA B 131 REMARK 465 GLU B 132 REMARK 465 GLU B 133 REMARK 465 MET B 134 REMARK 465 GLU B 135 REMARK 465 VAL B 136 REMARK 465 SER B 137 REMARK 465 LEU B 138 REMARK 465 ALA B 139 REMARK 465 LYS B 140 REMARK 465 THR B 450 REMARK 465 PRO B 451 REMARK 465 PRO B 452 REMARK 465 ASP B 453 REMARK 465 GLN B 454 REMARK 465 ASP B 455 REMARK 465 ASP B 456 REMARK 465 SER B 457 REMARK 465 MET B 458 REMARK 465 GLU B 459 REMARK 465 CYS B 460 REMARK 465 VAL B 461 REMARK 465 ASP B 462 REMARK 465 SER B 463 REMARK 465 GLY B 478 REMARK 465 THR B 479 REMARK 465 ALA B 480 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 465 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 464 CG CD OE1 OE2 REMARK 470 ARG B 465 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 243 -60.41 77.97 REMARK 500 ARG A 273 -6.30 69.19 REMARK 500 ASP A 292 89.04 63.44 REMARK 500 LYS A 301 -167.40 -105.73 REMARK 500 ASP A 302 79.88 -57.64 REMARK 500 ASP A 398 -125.85 55.98 REMARK 500 GLN A 428 52.22 -93.46 REMARK 500 ILE A 447 59.33 -145.61 REMARK 500 ARG A 466 -142.99 176.96 REMARK 500 ARG B 144 73.10 47.38 REMARK 500 VAL B 145 144.55 -27.70 REMARK 500 ARG B 243 -58.79 75.73 REMARK 500 ARG B 273 -7.27 69.03 REMARK 500 ASP B 292 91.90 71.96 REMARK 500 ASP B 302 -128.70 49.82 REMARK 500 ASP B 325 156.14 82.45 REMARK 500 ASP B 398 -128.00 57.17 REMARK 500 THR B 430 -78.41 -74.92 REMARK 500 ILE B 447 102.64 111.95 REMARK 500 THR B 448 129.87 82.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 292 OD2 REMARK 620 2 HOH A 631 O 96.6 REMARK 620 3 ZXW F 7 O2A 168.9 85.9 REMARK 620 4 ZXW F 7 O2B 105.6 96.2 84.7 REMARK 620 5 ZXW F 7 O3B 105.0 149.8 76.9 58.1 REMARK 620 6 HOH F 202 O 92.5 76.4 77.6 161.2 122.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 314 OE2 REMARK 620 2 HIS A 354 NE2 95.6 REMARK 620 3 HOH A 706 O 85.2 87.9 REMARK 620 4 HOH A 749 O 96.2 99.0 172.8 REMARK 620 5 HOH B 630 O 89.5 174.8 93.5 79.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN G 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 292 OD2 REMARK 620 2 ZXW G 7 O1A 146.6 REMARK 620 3 ZXW G 7 O1B 90.4 61.7 REMARK 620 4 ZXW G 7 O1G 96.7 96.5 80.7 REMARK 620 5 HOH G 606 O 114.2 91.6 153.3 105.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 314 OE2 REMARK 620 2 HOH B 709 O 62.8 REMARK 620 3 HOH B 722 O 104.0 78.2 REMARK 620 4 HOH B 731 O 83.2 96.3 167.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN G 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6BUU RELATED DB: PDB DBREF 6NPZ A 123 480 UNP P31749 AKT1_HUMAN 123 480 DBREF 6NPZ B 123 480 UNP P31749 AKT1_HUMAN 123 480 DBREF 6NPZ F 1 10 PDB 6NPZ 6NPZ 1 10 DBREF 6NPZ G 1 10 PDB 6NPZ 6NPZ 1 10 SEQRES 1 A 358 GLY SER PRO SER ASP ASN SER GLY ALA GLU GLU MET GLU SEQRES 2 A 358 VAL SER LEU ALA LYS PRO LYS HIS ARG VAL THR MET ASN SEQRES 3 A 358 GLU PHE GLU TYR LEU LYS LEU LEU GLY LYS GLY THR PHE SEQRES 4 A 358 GLY LYS VAL ILE LEU VAL LYS GLU LYS ALA THR GLY ARG SEQRES 5 A 358 TYR TYR ALA MET LYS ILE LEU LYS LYS GLU VAL ILE VAL SEQRES 6 A 358 ALA LYS ASP GLU VAL ALA HIS THR LEU THR GLU ASN ARG SEQRES 7 A 358 VAL LEU GLN ASN SER ARG HIS PRO PHE LEU THR ALA LEU SEQRES 8 A 358 LYS TYR SER PHE GLN THR HIS ASP ARG LEU CYS PHE VAL SEQRES 9 A 358 MET GLU TYR ALA ASN GLY GLY GLU LEU PHE PHE HIS LEU SEQRES 10 A 358 SER ARG GLU ARG VAL PHE SER GLU ASP ARG ALA ARG PHE SEQRES 11 A 358 TYR GLY ALA GLU ILE VAL SER ALA LEU ASP TYR LEU HIS SEQRES 12 A 358 SER GLU LYS ASN VAL VAL TYR ARG ASP LEU LYS LEU GLU SEQRES 13 A 358 ASN LEU MET LEU ASP LYS ASP GLY HIS ILE LYS ILE THR SEQRES 14 A 358 ASP PHE GLY LEU CYS LYS GLU GLY ILE LYS ASP GLY ALA SEQRES 15 A 358 THR MET LYS TPO PHE CYS GLY THR PRO GLU TYR LEU ALA SEQRES 16 A 358 PRO GLU VAL LEU GLU ASP ASN ASP TYR GLY ARG ALA VAL SEQRES 17 A 358 ASP TRP TRP GLY LEU GLY VAL VAL MET TYR GLU MET MET SEQRES 18 A 358 CYS GLY ARG LEU PRO PHE TYR ASN GLN ASP HIS GLU LYS SEQRES 19 A 358 LEU PHE GLU LEU ILE LEU MET GLU GLU ILE ARG PHE PRO SEQRES 20 A 358 ARG THR LEU GLY PRO GLU ALA LYS SER LEU LEU SER GLY SEQRES 21 A 358 LEU LEU LYS LYS ASP PRO LYS GLN ARG LEU GLY GLY GLY SEQRES 22 A 358 SER GLU ASP ALA LYS GLU ILE MET GLN HIS ARG PHE PHE SEQRES 23 A 358 ALA GLY ILE VAL TRP GLN HIS VAL TYR GLU LYS LYS LEU SEQRES 24 A 358 SER PRO PRO PHE LYS PRO GLN VAL THR SER GLU THR ASP SEQRES 25 A 358 THR ARG TYR PHE ASP GLU GLU PHE THR ALA GLN MET ILE SEQRES 26 A 358 THR ILE THR PRO PRO ASP GLN ASP ASP SER MET GLU CYS SEQRES 27 A 358 VAL ASP SER GLU ARG ARG PRO HIS PHE PRO GLN PHE SEP SEQRES 28 A 358 TYR SER ALA SEP GLY THR ALA SEQRES 1 B 358 GLY SER PRO SER ASP ASN SER GLY ALA GLU GLU MET GLU SEQRES 2 B 358 VAL SER LEU ALA LYS PRO LYS HIS ARG VAL THR MET ASN SEQRES 3 B 358 GLU PHE GLU TYR LEU LYS LEU LEU GLY LYS GLY THR PHE SEQRES 4 B 358 GLY LYS VAL ILE LEU VAL LYS GLU LYS ALA THR GLY ARG SEQRES 5 B 358 TYR TYR ALA MET LYS ILE LEU LYS LYS GLU VAL ILE VAL SEQRES 6 B 358 ALA LYS ASP GLU VAL ALA HIS THR LEU THR GLU ASN ARG SEQRES 7 B 358 VAL LEU GLN ASN SER ARG HIS PRO PHE LEU THR ALA LEU SEQRES 8 B 358 LYS TYR SER PHE GLN THR HIS ASP ARG LEU CYS PHE VAL SEQRES 9 B 358 MET GLU TYR ALA ASN GLY GLY GLU LEU PHE PHE HIS LEU SEQRES 10 B 358 SER ARG GLU ARG VAL PHE SER GLU ASP ARG ALA ARG PHE SEQRES 11 B 358 TYR GLY ALA GLU ILE VAL SER ALA LEU ASP TYR LEU HIS SEQRES 12 B 358 SER GLU LYS ASN VAL VAL TYR ARG ASP LEU LYS LEU GLU SEQRES 13 B 358 ASN LEU MET LEU ASP LYS ASP GLY HIS ILE LYS ILE THR SEQRES 14 B 358 ASP PHE GLY LEU CYS LYS GLU GLY ILE LYS ASP GLY ALA SEQRES 15 B 358 THR MET LYS TPO PHE CYS GLY THR PRO GLU TYR LEU ALA SEQRES 16 B 358 PRO GLU VAL LEU GLU ASP ASN ASP TYR GLY ARG ALA VAL SEQRES 17 B 358 ASP TRP TRP GLY LEU GLY VAL VAL MET TYR GLU MET MET SEQRES 18 B 358 CYS GLY ARG LEU PRO PHE TYR ASN GLN ASP HIS GLU LYS SEQRES 19 B 358 LEU PHE GLU LEU ILE LEU MET GLU GLU ILE ARG PHE PRO SEQRES 20 B 358 ARG THR LEU GLY PRO GLU ALA LYS SER LEU LEU SER GLY SEQRES 21 B 358 LEU LEU LYS LYS ASP PRO LYS GLN ARG LEU GLY GLY GLY SEQRES 22 B 358 SER GLU ASP ALA LYS GLU ILE MET GLN HIS ARG PHE PHE SEQRES 23 B 358 ALA GLY ILE VAL TRP GLN HIS VAL TYR GLU LYS LYS LEU SEQRES 24 B 358 SER PRO PRO PHE LYS PRO GLN VAL THR SER GLU THR ASP SEQRES 25 B 358 THR ARG TYR PHE ASP GLU GLU PHE THR ALA GLN MET ILE SEQRES 26 B 358 THR ILE THR PRO PRO ASP GLN ASP ASP SER MET GLU CYS SEQRES 27 B 358 VAL ASP SER GLU ARG ARG PRO HIS PHE PRO GLN PHE SEP SEQRES 28 B 358 TYR SER ALA SEP GLY THR ALA SEQRES 1 F 10 GLY ARG PRO ARG THR THR ZXW PHE ALA GLU SEQRES 1 G 10 GLY ARG PRO ARG THR THR ZXW PHE ALA GLU MODRES 6NPZ TPO A 308 THR MODIFIED RESIDUE MODRES 6NPZ SEP A 473 SER MODIFIED RESIDUE MODRES 6NPZ SEP A 477 SER MODIFIED RESIDUE MODRES 6NPZ TPO B 308 THR MODIFIED RESIDUE MODRES 6NPZ SEP B 473 SER MODIFIED RESIDUE MODRES 6NPZ SEP B 477 SER MODIFIED RESIDUE HET TPO A 308 11 HET SEP A 473 10 HET SEP A 477 10 HET TPO B 308 11 HET SEP B 473 10 HET SEP B 477 10 HET ZXW F 7 40 HET ZXW G 7 40 HET MN A 501 1 HET PGE A 502 10 HET PGE A 503 10 HET GOL B 501 6 HET VO4 B 502 5 HET MN B 503 1 HET MN F 101 1 HET MN G 501 1 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM ZXW 5'-O-[(S)-{[(R)-{[(R)-[(2-{[(2S)-2-AMINO-3- HETNAM 2 ZXW OXOPROPYL]AMINO}-2-OXOETHYL)SULFANYL](HYDROXY) HETNAM 3 ZXW PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY) HETNAM 4 ZXW PHOSPHORYL]ADENOSINE HETNAM MN MANGANESE (II) ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM VO4 VANADATE ION HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 1 SEP 4(C3 H8 N O6 P) FORMUL 3 ZXW 2(C15 H24 N7 O14 P3 S) FORMUL 5 MN 4(MN 2+) FORMUL 6 PGE 2(C6 H14 O4) FORMUL 8 GOL C3 H8 O3 FORMUL 9 VO4 O4 V 3- FORMUL 13 HOH *475(H2 O) HELIX 1 AA1 THR A 146 ASN A 148 5 3 HELIX 2 AA2 LYS A 183 LYS A 189 1 7 HELIX 3 AA3 GLU A 191 ASN A 204 1 14 HELIX 4 AA4 LEU A 235 ARG A 243 1 9 HELIX 5 AA5 SER A 246 ASN A 269 1 24 HELIX 6 AA6 LYS A 276 GLU A 278 5 3 HELIX 7 AA7 THR A 312 LEU A 316 5 5 HELIX 8 AA8 ALA A 317 ASP A 323 1 7 HELIX 9 AA9 ALA A 329 GLY A 345 1 17 HELIX 10 AB1 ASP A 353 GLU A 364 1 12 HELIX 11 AB2 GLY A 373 LEU A 384 1 12 HELIX 12 AB3 ASP A 387 ARG A 391 5 5 HELIX 13 AB4 ASP A 398 GLN A 404 1 7 HELIX 14 AB5 HIS A 405 ALA A 409 5 5 HELIX 15 AB6 VAL A 412 GLU A 418 1 7 HELIX 16 AB7 ASP A 439 ALA A 444 1 6 HELIX 17 AB8 THR B 146 ASN B 148 5 3 HELIX 18 AB9 LYS B 183 LYS B 189 1 7 HELIX 19 AC1 GLU B 191 ASN B 204 1 14 HELIX 20 AC2 GLU B 234 ARG B 243 1 10 HELIX 21 AC3 SER B 246 ASN B 269 1 24 HELIX 22 AC4 LYS B 276 GLU B 278 5 3 HELIX 23 AC5 THR B 312 LEU B 316 5 5 HELIX 24 AC6 ALA B 317 ASP B 323 1 7 HELIX 25 AC7 ALA B 329 GLY B 345 1 17 HELIX 26 AC8 ASP B 353 GLU B 364 1 12 HELIX 27 AC9 GLY B 373 LEU B 384 1 12 HELIX 28 AD1 ASP B 387 ARG B 391 5 5 HELIX 29 AD2 ASP B 398 GLN B 404 1 7 HELIX 30 AD3 HIS B 405 ALA B 409 5 5 HELIX 31 AD4 VAL B 412 GLU B 418 1 7 HELIX 32 AD5 ASP B 439 ALA B 444 1 6 SHEET 1 AA1 6 PHE A 150 LYS A 158 0 SHEET 2 AA1 6 GLY A 162 GLU A 169 -1 O LEU A 166 N LYS A 154 SHEET 3 AA1 6 TYR A 175 LYS A 182 -1 O MET A 178 N ILE A 165 SHEET 4 AA1 6 ARG A 222 MET A 227 -1 O LEU A 223 N LEU A 181 SHEET 5 AA1 6 LEU A 213 GLN A 218 -1 N TYR A 215 O VAL A 226 SHEET 6 AA1 6 TYR A 474 SER A 475 -1 O TYR A 474 N SER A 216 SHEET 1 AA2 3 GLY A 233 GLU A 234 0 SHEET 2 AA2 3 LEU A 280 LEU A 282 -1 O LEU A 282 N GLY A 233 SHEET 3 AA2 3 ILE A 288 ILE A 290 -1 O LYS A 289 N MET A 281 SHEET 1 AA3 2 PHE A 309 GLY A 311 0 SHEET 2 AA3 2 PHE F 8 GLU F 10 -1 O PHE F 8 N GLY A 311 SHEET 1 AA4 6 PHE B 150 LYS B 158 0 SHEET 2 AA4 6 GLY B 162 GLU B 169 -1 O LYS B 168 N GLU B 151 SHEET 3 AA4 6 TYR B 175 LYS B 182 -1 O MET B 178 N ILE B 165 SHEET 4 AA4 6 ARG B 222 MET B 227 -1 O MET B 227 N ALA B 177 SHEET 5 AA4 6 LEU B 213 GLN B 218 -1 N TYR B 215 O VAL B 226 SHEET 6 AA4 6 TYR B 474 SER B 475 -1 O TYR B 474 N SER B 216 SHEET 1 AA5 2 LEU B 280 LEU B 282 0 SHEET 2 AA5 2 ILE B 288 ILE B 290 -1 O LYS B 289 N MET B 281 SHEET 1 AA6 2 CYS B 310 GLY B 311 0 SHEET 2 AA6 2 PHE G 8 ALA G 9 -1 O PHE G 8 N GLY B 311 LINK C LYS A 307 N TPO A 308 1555 1555 1.34 LINK C TPO A 308 N PHE A 309 1555 1555 1.33 LINK C PHE A 472 N SEP A 473 1555 1555 1.33 LINK C SEP A 473 N TYR A 474 1555 1555 1.34 LINK C ALA A 476 N SEP A 477 1555 1555 1.33 LINK C SEP A 477 N GLY A 478 1555 1555 1.34 LINK C LYS B 307 N TPO B 308 1555 1555 1.33 LINK C TPO B 308 N PHE B 309 1555 1555 1.32 LINK C PHE B 472 N SEP B 473 1555 1555 1.34 LINK C SEP B 473 N TYR B 474 1555 1555 1.33 LINK C ALA B 476 N SEP B 477 1555 1555 1.33 LINK C THR F 6 N ZXW F 7 1555 1555 1.31 LINK C ZXW F 7 N PHE F 8 1555 1555 1.33 LINK C THR G 6 N ZXW G 7 1555 1555 1.33 LINK C ZXW G 7 N PHE G 8 1555 1555 1.34 LINK OD2 ASP A 292 MN MN F 101 1555 1555 2.07 LINK OE2 GLU A 314 MN MN A 501 1555 1555 2.56 LINK NE2 HIS A 354 MN MN A 501 1555 1555 2.21 LINK MN MN A 501 O HOH A 706 1555 1555 2.54 LINK MN MN A 501 O HOH A 749 1555 1555 2.54 LINK MN MN A 501 O HOH B 630 1555 1455 2.66 LINK O HOH A 631 MN MN F 101 1555 1555 2.24 LINK OD2 ASP B 292 MN MN G 501 1555 1555 1.97 LINK OE2 GLU B 314 MN MN B 503 1555 1555 2.68 LINK MN MN B 503 O HOH B 709 1555 1555 2.76 LINK MN MN B 503 O HOH B 722 1555 1555 2.52 LINK MN MN B 503 O HOH B 731 1555 1555 2.75 LINK O2A ZXW F 7 MN MN F 101 1555 1555 1.90 LINK O2B ZXW F 7 MN MN F 101 1555 1555 2.40 LINK O3B ZXW F 7 MN MN F 101 1555 1555 2.61 LINK MN MN F 101 O HOH F 202 1555 1555 2.36 LINK O1A ZXW G 7 MN MN G 501 1555 1555 1.79 LINK O1B ZXW G 7 MN MN G 501 1555 1555 2.77 LINK O1G ZXW G 7 MN MN G 501 1555 1555 2.16 LINK MN MN G 501 O HOH G 606 1555 1555 2.10 CISPEP 1 ILE B 447 THR B 448 0 -1.05 SITE 1 AC1 5 GLU A 314 HIS A 354 HOH A 706 HOH A 749 SITE 2 AC1 5 HOH B 630 SITE 1 AC2 2 GLN A 414 TYR A 417 SITE 1 AC3 7 LEU A 347 PHE A 349 TYR A 350 LEU A 360 SITE 2 AC3 7 HOH A 639 HOH A 721 ARG F 2 SITE 1 AC4 6 LYS B 385 LYS B 386 ASP B 387 GLN B 390 SITE 2 AC4 6 HOH B 661 HOH B 719 SITE 1 AC5 4 ASN A 351 GLN A 352 HOH B 608 HOH B 739 SITE 1 AC6 6 GLU B 314 HIS B 354 HOH B 665 HOH B 709 SITE 2 AC6 6 HOH B 722 HOH B 731 SITE 1 AC7 4 ASP A 292 HOH A 631 ZXW F 7 HOH F 202 SITE 1 AC8 4 ASN B 279 ASP B 292 ZXW G 7 HOH G 606 CRYST1 86.321 56.088 92.019 90.00 104.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011585 0.000000 0.003008 0.00000 SCALE2 0.000000 0.017829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011228 0.00000