HEADER ISOMERASE 21-JAN-19 6NQH TITLE XANTHOMONAS CITRI DEPHOSPHO-PGM IN COMPLEX WITH XYLOSE-1-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI (STRAIN 306); SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: 306; SOURCE 5 GENE: XANA, XAC3579; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOGLUCOMUTASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.STIERS,L.J.BEAMER REVDAT 3 11-OCT-23 6NQH 1 HETSYN REVDAT 2 29-JUL-20 6NQH 1 COMPND REMARK HETNAM SITE REVDAT 1 29-JAN-20 6NQH 0 JRNL AUTH K.M.STIERS,L.J.BEAMER JRNL TITL SUBSTATE DYNAMICS OF THE XCPGM REACTION MECHANISM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.190 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.0 REMARK 3 NUMBER OF REFLECTIONS : 101364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 5281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7115 - 4.5034 0.99 4473 262 0.1378 0.1597 REMARK 3 2 4.5034 - 3.5752 0.80 3625 178 0.1374 0.1641 REMARK 3 3 3.5752 - 3.1235 0.86 3888 202 0.1669 0.2172 REMARK 3 4 3.1235 - 2.8380 1.00 4560 201 0.1785 0.2269 REMARK 3 5 2.8380 - 2.6346 0.64 2885 163 0.1790 0.2229 REMARK 3 6 2.6346 - 2.4793 1.00 4448 276 0.1717 0.1921 REMARK 3 7 2.4793 - 2.3552 1.00 4512 239 0.1723 0.1904 REMARK 3 8 2.3552 - 2.2527 0.96 3203 155 0.1710 0.1907 REMARK 3 9 2.2527 - 2.1659 0.96 2723 171 0.1672 0.2494 REMARK 3 10 2.1659 - 2.0912 0.94 3684 226 0.1674 0.1911 REMARK 3 11 2.0912 - 2.0258 0.87 983 45 0.1909 0.1886 REMARK 3 12 2.0258 - 1.9679 0.88 3348 198 0.1891 0.2053 REMARK 3 13 1.8694 - 1.8269 0.91 2599 120 0.1796 0.2295 REMARK 3 14 1.8269 - 1.7880 0.99 4517 230 0.1775 0.2483 REMARK 3 15 1.7880 - 1.7522 0.99 4347 244 0.1827 0.2399 REMARK 3 16 1.7522 - 1.7192 0.24 115 8 0.2339 0.4825 REMARK 3 17 1.7192 - 1.6885 0.42 206 20 0.2205 0.2127 REMARK 3 18 1.6885 - 1.6598 1.00 4518 232 0.1932 0.2645 REMARK 3 19 1.6598 - 1.6331 1.00 4548 227 0.1981 0.2666 REMARK 3 20 1.6331 - 1.6079 0.98 4399 266 0.2031 0.2492 REMARK 3 21 1.6079 - 1.5843 0.95 4271 248 0.2092 0.2606 REMARK 3 22 1.5843 - 1.5620 0.91 4052 240 0.2168 0.2539 REMARK 3 23 1.5620 - 1.5409 0.87 3941 238 0.2232 0.2516 REMARK 3 24 1.5409 - 1.5208 0.81 3619 206 0.2555 0.2649 REMARK 3 25 1.5208 - 1.5018 0.76 3493 188 0.2786 0.3134 REMARK 3 26 1.5018 - 1.4837 0.72 3249 156 0.2831 0.3178 REMARK 3 27 1.4837 - 1.4665 0.67 3009 165 0.3144 0.3822 REMARK 3 28 1.4665 - 1.4500 0.63 2868 177 0.2886 0.3391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3559 REMARK 3 ANGLE : 0.856 4839 REMARK 3 CHIRALITY : 0.077 537 REMARK 3 PLANARITY : 0.006 639 REMARK 3 DIHEDRAL : 4.444 2077 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 23:164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8406 37.5668 15.1453 REMARK 3 T TENSOR REMARK 3 T11: 0.1055 T22: 0.0900 REMARK 3 T33: 0.0948 T12: 0.0068 REMARK 3 T13: 0.0087 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.9821 L22: 1.7705 REMARK 3 L33: 1.9978 L12: -0.2050 REMARK 3 L13: -0.1551 L23: 0.5750 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: 0.0782 S13: -0.0910 REMARK 3 S21: -0.0583 S22: 0.0199 S23: 0.0460 REMARK 3 S31: 0.1900 S32: 0.0063 S33: 0.0088 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 165:372 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2253 54.0482 31.2600 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: 0.0815 REMARK 3 T33: 0.0767 T12: -0.0000 REMARK 3 T13: 0.0033 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.2967 L22: 0.5233 REMARK 3 L33: 0.6695 L12: -0.0542 REMARK 3 L13: -0.0738 L23: -0.1492 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0164 S13: -0.0047 REMARK 3 S21: -0.0001 S22: 0.0083 S23: -0.0091 REMARK 3 S31: 0.0121 S32: 0.0097 S33: -0.0131 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 373:399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0189 61.9390 25.2863 REMARK 3 T TENSOR REMARK 3 T11: 0.0664 T22: 0.0567 REMARK 3 T33: 0.0702 T12: 0.0016 REMARK 3 T13: 0.0249 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.0498 L22: 0.2620 REMARK 3 L33: 2.3006 L12: 0.1369 REMARK 3 L13: 1.1703 L23: -0.4191 REMARK 3 S TENSOR REMARK 3 S11: -0.0122 S12: 0.0385 S13: -0.0540 REMARK 3 S21: 0.0271 S22: 0.0623 S23: -0.0351 REMARK 3 S31: 0.0859 S32: -0.0128 S33: -0.0482 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 400:448 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3392 63.7153 10.2150 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.0816 REMARK 3 T33: 0.0794 T12: -0.0088 REMARK 3 T13: -0.0041 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.3598 L22: 2.0952 REMARK 3 L33: 2.5364 L12: -0.4351 REMARK 3 L13: -0.5215 L23: 0.8401 REMARK 3 S TENSOR REMARK 3 S11: -0.0401 S12: 0.1645 S13: -0.1159 REMARK 3 S21: -0.1752 S22: 0.0894 S23: -0.0755 REMARK 3 S31: 0.0769 S32: 0.0527 S33: -0.0405 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NQH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54627 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 57.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 72.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.64200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BMN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8000, 0.2M MGCL, 0.1M HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.93150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.67950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.31300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.67950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.93150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.31300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 37 CG CD OE1 NE2 REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 361 O HOH A 601 2.09 REMARK 500 NE2 GLN A 264 O HOH A 602 2.09 REMARK 500 O HOH A 920 O HOH A 941 2.16 REMARK 500 O HOH A 616 O HOH A 644 2.16 REMARK 500 O ASN A 284 O HOH A 601 2.17 REMARK 500 O HOH A 920 O HOH A 979 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 22 NZ LYS A 379 4565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 36 -172.96 -68.28 REMARK 500 ALA A 96 67.11 -151.32 REMARK 500 ARG A 110 -152.38 -104.69 REMARK 500 ASN A 211 84.97 -157.16 REMARK 500 THR A 282 -44.39 -133.66 REMARK 500 ASP A 400 86.06 -155.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 96 SER A 97 -148.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 237 OD2 REMARK 620 2 ASP A 239 OD1 97.6 REMARK 620 3 ASP A 239 OD2 144.5 47.5 REMARK 620 4 ASP A 241 OD1 94.6 91.1 81.7 REMARK 620 5 X1P A 503 O2P 93.1 95.1 96.0 169.4 REMARK 620 6 HOH A 634 O 100.5 160.7 113.6 81.1 90.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NN2 RELATED DB: PDB REMARK 900 RELATED ID: 6NN1 RELATED DB: PDB REMARK 900 RELATED ID: 6NNO RELATED DB: PDB REMARK 900 RELATED ID: 6NNN RELATED DB: PDB REMARK 900 RELATED ID: 6NNS RELATED DB: PDB REMARK 900 RELATED ID: 6NNP RELATED DB: PDB REMARK 900 RELATED ID: 6NOQ RELATED DB: PDB REMARK 900 RELATED ID: 6NOL RELATED DB: PDB REMARK 900 RELATED ID: 6NP8 RELATED DB: PDB REMARK 900 RELATED ID: 6NPX RELATED DB: PDB REMARK 900 RELATED ID: 6NNU RELATED DB: PDB REMARK 900 RELATED ID: 6NQF RELATED DB: PDB REMARK 900 RELATED ID: 6NQE RELATED DB: PDB REMARK 900 RELATED ID: 6NQG RELATED DB: PDB REMARK 900 RELATED ID: 6NNT RELATED DB: PDB DBREF 6NQH A 1 448 UNP Q8PGN7 Q8PGN7_XANAC 3 450 SEQADV 6NQH MET A -19 UNP Q8PGN7 INITIATING METHIONINE SEQADV 6NQH GLY A -18 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH SER A -17 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH SER A -16 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH HIS A -15 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH HIS A -14 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH HIS A -13 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH HIS A -12 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH HIS A -11 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH HIS A -10 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH SER A -9 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH SER A -8 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH GLU A -7 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH ASN A -6 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH LEU A -5 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH TYR A -4 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH PHE A -3 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH GLN A -2 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH SER A -1 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NQH HIS A 0 UNP Q8PGN7 EXPRESSION TAG SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLU SEQRES 2 A 468 ASN LEU TYR PHE GLN SER HIS MET THR LEU PRO ALA PHE SEQRES 3 A 468 LYS ALA TYR ASP ILE ARG GLY ARG VAL PRO ASP GLU LEU SEQRES 4 A 468 ASN GLU ASP LEU ALA ARG ARG ILE GLY VAL ALA LEU ALA SEQRES 5 A 468 ALA GLN LEU ASP GLN GLY PRO VAL VAL LEU GLY HIS ASP SEQRES 6 A 468 VAL ARG LEU ALA SER PRO ALA LEU GLN GLU ALA LEU SER SEQRES 7 A 468 ALA GLY LEU ARG ALA SER GLY ARG ASP VAL ILE ASP ILE SEQRES 8 A 468 GLY LEU CYS GLY THR GLU GLU VAL TYR PHE GLN THR ASP SEQRES 9 A 468 TYR LEU LYS ALA ALA GLY GLY VAL MET VAL THR ALA SER SEQRES 10 A 468 HIS ASN PRO MET ASP TYR ASN GLY MET LYS LEU VAL ARG SEQRES 11 A 468 GLU GLN ALA ARG PRO ILE SER SER ASP THR GLY LEU PHE SEQRES 12 A 468 ALA ILE ARG ASP THR VAL ALA ALA ASP THR ALA ALA PRO SEQRES 13 A 468 GLY GLU PRO THR ALA SER GLU GLN SER ARG THR ASP LYS SEQRES 14 A 468 THR ALA TYR LEU GLU HIS LEU LEU SER TYR VAL ASP ARG SEQRES 15 A 468 SER THR LEU LYS PRO LEU LYS LEU VAL VAL ASN ALA GLY SEQRES 16 A 468 ASN GLY GLY ALA GLY LEU ILE VAL ASP LEU LEU ALA PRO SEQRES 17 A 468 HIS LEU PRO PHE GLU PHE VAL ARG VAL PHE HIS GLU PRO SEQRES 18 A 468 ASP GLY ASN PHE PRO ASN GLY ILE PRO ASN PRO LEU LEU SEQRES 19 A 468 PRO GLU ASN ARG ASP ALA THR ALA LYS ALA VAL LYS ASP SEQRES 20 A 468 ASN GLY ALA ASP PHE GLY ILE ALA TRP ASP GLY ASP PHE SEQRES 21 A 468 ASP ARG CYS PHE PHE PHE ASP HIS THR GLY ARG PHE ILE SEQRES 22 A 468 GLU GLY TYR TYR LEU VAL GLY LEU LEU ALA GLN ALA ILE SEQRES 23 A 468 LEU ALA LYS GLN PRO GLY GLY LYS VAL VAL HIS ASP PRO SEQRES 24 A 468 ARG LEU THR TRP ASN THR VAL GLU GLN VAL GLU GLU ALA SEQRES 25 A 468 GLY GLY ILE PRO VAL LEU CYS LYS SER GLY HIS ALA PHE SEQRES 26 A 468 ILE LYS GLU LYS MET ARG SER GLU ASN ALA VAL TYR GLY SEQRES 27 A 468 GLY GLU MET SER ALA HIS HIS TYR PHE ARG GLU PHE ALA SEQRES 28 A 468 TYR ALA ASP SER GLY MET ILE PRO TRP LEU LEU ILE ALA SEQRES 29 A 468 GLU LEU VAL SER GLN SER GLY ARG SER LEU ALA ASP LEU SEQRES 30 A 468 VAL GLU ALA ARG MET GLN LYS PHE PRO CYS SER GLY GLU SEQRES 31 A 468 ILE ASN PHE LYS VAL ALA ASP ALA LYS ALA SER VAL ALA SEQRES 32 A 468 ARG VAL MET GLU HIS TYR ALA SER LEU SER PRO GLU LEU SEQRES 33 A 468 ASP TYR THR ASP GLY ILE SER ALA ASP PHE GLY GLN TRP SEQRES 34 A 468 ARG PHE ASN LEU ARG SER SER ASN THR GLU PRO LEU LEU SEQRES 35 A 468 ARG LEU ASN VAL GLU THR ARG GLY ASP ALA ALA LEU LEU SEQRES 36 A 468 GLU THR ARG THR GLN GLU ILE SER ASN LEU LEU ARG GLY HET MG A 501 1 HET X1P A 502 14 HET X1P A 503 14 HETNAM MG MAGNESIUM ION HETNAM X1P 1-O-PHOSPHONO-ALPHA-D-XYLOPYRANOSE HETSYN X1P 1-O-PHOSPHONO-ALPHA-D-XYLOSE; 1-O-PHOSPHONO-D-XYLOSE; HETSYN 2 X1P 1-O-PHOSPHONO-XYLOSE FORMUL 2 MG MG 2+ FORMUL 3 X1P 2(C5 H11 O8 P) FORMUL 5 HOH *409(H2 O) HELIX 1 AA1 ASN A 20 ALA A 33 1 14 HELIX 2 AA2 ALA A 49 SER A 64 1 16 HELIX 3 AA3 GLY A 75 LEU A 86 1 12 HELIX 4 AA4 ARG A 110 ARG A 114 5 5 HELIX 5 AA5 SER A 117 THR A 120 5 4 HELIX 6 AA6 GLY A 121 ASP A 132 1 12 HELIX 7 AA7 LYS A 149 SER A 158 1 10 HELIX 8 AA8 TYR A 159 VAL A 160 5 2 HELIX 9 AA9 ASP A 161 LEU A 165 5 5 HELIX 10 AB1 GLY A 178 ALA A 187 1 10 HELIX 11 AB2 PRO A 188 LEU A 190 5 3 HELIX 12 AB3 LEU A 214 GLY A 229 1 16 HELIX 13 AB4 GLU A 254 GLN A 270 1 17 HELIX 14 AB5 THR A 282 ALA A 292 1 11 HELIX 15 AB6 GLY A 302 ASN A 314 1 13 HELIX 16 AB7 MET A 337 GLY A 351 1 15 HELIX 17 AB8 SER A 353 PHE A 365 1 13 HELIX 18 AB9 ASP A 377 ALA A 390 1 14 HELIX 19 AC1 SER A 391 SER A 393 5 3 HELIX 20 AC2 ASP A 431 ARG A 447 1 17 SHEET 1 AA1 6 ILE A 11 ARG A 14 0 SHEET 2 AA1 6 TYR A 103 VAL A 109 -1 O MET A 106 N ILE A 11 SHEET 3 AA1 6 GLY A 90 VAL A 94 -1 N GLY A 91 O VAL A 109 SHEET 4 AA1 6 VAL A 40 HIS A 44 1 N GLY A 43 O VAL A 94 SHEET 5 AA1 6 VAL A 68 LEU A 73 1 O ILE A 71 N LEU A 42 SHEET 6 AA1 6 GLU A 143 SER A 145 1 O GLN A 144 N ASP A 70 SHEET 1 AA2 4 GLU A 193 VAL A 197 0 SHEET 2 AA2 4 LYS A 169 ASN A 173 1 N VAL A 172 O VAL A 197 SHEET 3 AA2 4 PHE A 232 TRP A 236 1 O ILE A 234 N VAL A 171 SHEET 4 AA2 4 CYS A 243 PHE A 246 -1 O PHE A 246 N GLY A 233 SHEET 1 AA3 4 ILE A 295 LEU A 298 0 SHEET 2 AA3 4 LYS A 274 HIS A 277 1 N VAL A 275 O VAL A 297 SHEET 3 AA3 4 TYR A 317 GLU A 320 1 O TYR A 317 N VAL A 276 SHEET 4 AA3 4 HIS A 324 PHE A 327 -1 O TYR A 326 N GLY A 318 SHEET 1 AA4 5 ILE A 371 PHE A 373 0 SHEET 2 AA4 5 LEU A 422 THR A 428 -1 O LEU A 422 N PHE A 373 SHEET 3 AA4 5 TRP A 409 SER A 415 -1 N ARG A 414 O ARG A 423 SHEET 4 AA4 5 ILE A 402 ASP A 405 -1 N ALA A 404 O PHE A 411 SHEET 5 AA4 5 GLU A 395 ASP A 397 -1 N GLU A 395 O ASP A 405 LINK OD2 ASP A 237 MG MG A 501 1555 1555 1.99 LINK OD1 ASP A 239 MG MG A 501 1555 1555 2.02 LINK OD2 ASP A 239 MG MG A 501 1555 1555 2.96 LINK OD1 ASP A 241 MG MG A 501 1555 1555 2.07 LINK MG MG A 501 O2P X1P A 503 1555 1555 2.02 LINK MG MG A 501 O HOH A 634 1555 1555 2.11 CISPEP 1 VAL A 15 PRO A 16 0 3.28 CRYST1 43.863 54.626 173.359 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022798 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005768 0.00000