HEADER HYDROLASE/HYDROLASE INHIBITOR 22-JAN-19 6NR0
TITLE SIRT2(56-356) WITH COVALENT INTERMEDIATE BETWEEN MECHANISM-BASED
TITLE 2 INHIBITOR GLUCOSE-TM-1BETA AND 1'-SH ADP-RIBOSE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 2,SIR2-LIKE PROTEIN 2;
COMPND 5 EC: 3.5.1.-;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: SIRT2, SIR2L, SIR2L2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)
KEYWDS INHIBITOR, INTERMEDIATE, DEACYLASE, HYDROLASE, HYDROLASE-HYDROLASE
KEYWDS 2 INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR I.R.PRICE,J.HONG
REVDAT 3 11-OCT-23 6NR0 1 REMARK
REVDAT 2 27-OCT-21 6NR0 1 JRNL
REVDAT 1 22-JAN-20 6NR0 0
JRNL AUTH J.Y.HONG,I.R.PRICE,J.J.BAI,H.LIN
JRNL TITL A GLYCOCONJUGATED SIRT2 INHIBITOR WITH AQUEOUS SOLUBILITY
JRNL TITL 2 ALLOWS STRUCTURE-BASED DESIGN OF SIRT2 INHIBITORS.
JRNL REF ACS CHEM.BIOL. V. 14 1802 2019
JRNL REFN ESSN 1554-8937
JRNL PMID 31373792
JRNL DOI 10.1021/ACSCHEMBIO.9B00384
REMARK 2
REMARK 2 RESOLUTION. 2.45 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.13_2998
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.69
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8
REMARK 3 NUMBER OF REFLECTIONS : 24105
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.223
REMARK 3 R VALUE (WORKING SET) : 0.220
REMARK 3 FREE R VALUE : 0.256
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.840
REMARK 3 FREE R VALUE TEST SET COUNT : 1889
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 63.6900 - 5.7600 0.97 1865 160 0.2143 0.2298
REMARK 3 2 5.7600 - 4.5700 0.97 1803 159 0.1841 0.2197
REMARK 3 3 4.5700 - 3.9900 0.97 1832 151 0.1777 0.1968
REMARK 3 4 3.9900 - 3.6300 0.96 1769 151 0.2055 0.2155
REMARK 3 5 3.6300 - 3.3700 0.96 1797 149 0.2238 0.2738
REMARK 3 6 3.3700 - 3.1700 0.95 1764 151 0.2481 0.3046
REMARK 3 7 3.1700 - 3.0100 0.94 1747 155 0.2514 0.3014
REMARK 3 8 3.0100 - 2.8800 0.93 1702 154 0.2533 0.2837
REMARK 3 9 2.8800 - 2.7700 0.90 1645 145 0.2493 0.2895
REMARK 3 10 2.7700 - 2.6700 0.89 1651 138 0.2537 0.3488
REMARK 3 11 2.6700 - 2.5900 0.84 1593 128 0.2680 0.3250
REMARK 3 12 2.5900 - 2.5200 0.83 1524 123 0.2901 0.3967
REMARK 3 13 2.5200 - 2.4500 0.83 1524 125 0.3015 0.3572
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.356
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.165
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 41.82
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.87
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.011 4934
REMARK 3 ANGLE : 1.340 6659
REMARK 3 CHIRALITY : 0.278 712
REMARK 3 PLANARITY : 0.007 841
REMARK 3 DIHEDRAL : 25.061 1881
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : 1
REMARK 3 NCS GROUP : 1
REMARK 3 NCS OPERATOR : 1
REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 57 THROUGH 180 OR
REMARK 3 RESID 182 THROUGH 291 OR RESID 304
REMARK 3 THROUGH 339 OR RESID 341 THROUGH 355 OR
REMARK 3 RESID 401 OR (RESID 403 AND (NAME N OR
REMARK 3 NAME C OR NAME O OR NAME C1 OR NAME C10
REMARK 3 OR NAME C11 OR NAME C12 OR NAME C13 OR
REMARK 3 NAME C14 OR NAME C15 OR NAME C16 OR NAME
REMARK 3 C2 OR NAME C20 OR NAME C21 OR NAME C22 OR
REMARK 3 NAME C23 OR NAME C24 OR NAME C25 OR NAME
REMARK 3 C26 OR NAME C27 OR NAME C28 OR NAME C3 OR
REMARK 3 NAME C4 OR NAME C5 OR NAME C6 OR NAME C7
REMARK 3 OR NAME C8 OR NAME C9 OR NAME N1 OR NAME
REMARK 3 N5 OR NAME O4 )) OR RESID 404))
REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 57 THROUGH 180 OR
REMARK 3 RESID 182 THROUGH 291 OR RESID 304
REMARK 3 THROUGH 339 OR RESID 341 THROUGH 355 OR
REMARK 3 RESID 401 OR (RESID 403 AND (NAME N OR
REMARK 3 NAME C OR NAME O OR NAME C1 OR NAME C10
REMARK 3 OR NAME C11 OR NAME C12 OR NAME C13 OR
REMARK 3 NAME C14 OR NAME C15 OR NAME C16 OR NAME
REMARK 3 C2 OR NAME C20 OR NAME C21 OR NAME C22 OR
REMARK 3 NAME C23 OR NAME C24 OR NAME C25 OR NAME
REMARK 3 C26 OR NAME C27 OR NAME C28 OR NAME C3 OR
REMARK 3 NAME C4 OR NAME C5 OR NAME C6 OR NAME C7
REMARK 3 OR NAME C8 OR NAME C9 OR NAME N1 OR NAME
REMARK 3 N5 OR NAME O4 )) OR RESID 404))
REMARK 3 ATOM PAIRS NUMBER : NULL
REMARK 3 RMSD : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6NR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-19.
REMARK 100 THE DEPOSITION ID IS D_1000239131.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 10-SEP-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 5.0.3
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25380
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450
REMARK 200 RESOLUTION RANGE LOW (A) : 63.693
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8
REMARK 200 DATA REDUNDANCY : 2.000
REMARK 200 R MERGE (I) : 0.03585
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.3300
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54
REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5
REMARK 200 DATA REDUNDANCY IN SHELL : 2.00
REMARK 200 R MERGE FOR SHELL (I) : 0.38840
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.060
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4X3O
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 55.04
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: MIXED SOLUTION OF 0.44 MM PROTEIN (IN
REMARK 280 BUFFER OF 20 MM TRIS/HCL PH 7.5, 160 MM NACL) 2.5 MM NAD+, 2.5
REMARK 280 MM GLUCOSE-TM-1BETA WITH AN EQUAL VOLUME OF WELL SOLUTION OF 2 M
REMARK 280 (NH4)2SO4, 80 MM NA ACETATE/HCL PH 5.0, VAPOR DIFFUSION, HANGING
REMARK 280 DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z+1/2
REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.29797
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.42000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.93000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.29797
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.42000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 56.93000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 38
REMARK 465 ASP A 39
REMARK 465 PHE A 40
REMARK 465 LEU A 41
REMARK 465 ARG A 42
REMARK 465 ASN A 43
REMARK 465 LEU A 44
REMARK 465 PHE A 45
REMARK 465 SER A 46
REMARK 465 GLN A 47
REMARK 465 THR A 48
REMARK 465 LEU A 49
REMARK 465 SER A 50
REMARK 465 LEU A 51
REMARK 465 GLY A 52
REMARK 465 SER A 53
REMARK 465 GLN A 54
REMARK 465 LYS A 55
REMARK 465 SER A 293
REMARK 465 ASP A 294
REMARK 465 PRO A 295
REMARK 465 PHE A 296
REMARK 465 LEU A 297
REMARK 465 GLY A 298
REMARK 465 MET A 299
REMARK 465 ILE A 300
REMARK 465 MET A 301
REMARK 465 GLY A 302
REMARK 465 LEU A 303
REMARK 465 SER A 356
REMARK 465 MET B 38
REMARK 465 ASP B 39
REMARK 465 PHE B 40
REMARK 465 LEU B 41
REMARK 465 ARG B 42
REMARK 465 ASN B 43
REMARK 465 LEU B 44
REMARK 465 PHE B 45
REMARK 465 SER B 46
REMARK 465 GLN B 47
REMARK 465 THR B 48
REMARK 465 LEU B 49
REMARK 465 SER B 50
REMARK 465 LEU B 51
REMARK 465 GLY B 52
REMARK 465 SER B 53
REMARK 465 GLN B 54
REMARK 465 LYS B 55
REMARK 465 GLU B 56
REMARK 465 ASP B 294
REMARK 465 PRO B 295
REMARK 465 PHE B 296
REMARK 465 LEU B 297
REMARK 465 GLY B 298
REMARK 465 MET B 299
REMARK 465 ILE B 300
REMARK 465 MET B 301
REMARK 465 SER B 356
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HD1 HIS A 187 HO3N KXG A 403 1.22
REMARK 500 HD1 HIS A 187 O3D KXG A 403 1.33
REMARK 500 OD1 ASP A 95 HG SER A 98 1.44
REMARK 500 HG SER A 207 O HOH A 502 1.45
REMARK 500 HZ2 LYS A 312 O HOH A 505 1.49
REMARK 500 O HOH A 522 O HOH A 535 1.95
REMARK 500 O HOH A 530 O HOH B 555 2.06
REMARK 500 ND1 HIS A 187 O3D KXG A 403 2.08
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OE2 GLU B 74 HZ2 LYS B 210 4545 1.56
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 57 70.62 48.76
REMARK 500 SER A 100 -57.19 76.80
REMARK 500 CYS A 200 -69.32 -104.46
REMARK 500 GLN A 225 18.49 59.39
REMARK 500 ASP A 231 44.55 -80.37
REMARK 500 TYR A 315 -27.04 -145.66
REMARK 500 ALA A 354 35.30 -90.34
REMARK 500 SER B 100 -55.09 80.57
REMARK 500 CYS B 200 -74.73 -108.13
REMARK 500 PRO B 230 150.27 -49.06
REMARK 500 GLN B 292 -161.87 -78.68
REMARK 500 GLN B 292 -162.38 -78.09
REMARK 500 TYR B 315 -26.13 -146.40
REMARK 500 ASP B 353 30.35 -72.20
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH B 565 DISTANCE = 6.47 ANGSTROMS
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 KXJ A 402
REMARK 610 KXJ B 402
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 401 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 195 SG
REMARK 620 2 CYS A 200 SG 109.3
REMARK 620 3 CYS A 221 SG 121.2 117.6
REMARK 620 4 CYS A 224 SG 87.4 101.2 114.5
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NA B 404 NA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASN B 168 OD1
REMARK 620 2 KXG B 403 O2N 104.5
REMARK 620 3 KXG B 403 O3D 137.5 88.0
REMARK 620 4 HOH B 554 O 111.7 141.9 73.5
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B 401 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS B 195 SG
REMARK 620 2 CYS B 200 SG 98.1
REMARK 620 3 CYS B 221 SG 135.5 98.2
REMARK 620 4 CYS B 224 SG 101.3 94.2 118.4
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NA B 405 NA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU B 288 OE2
REMARK 620 2 HOH B 501 O 55.2
REMARK 620 N 1
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 404
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 405
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 406
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 407
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 409
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residues KXJ A 402 and KXG A
REMARK 800 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residues KXJ B 402 and KXG B
REMARK 800 403
DBREF 6NR0 A 38 356 UNP Q8IXJ6 SIR2_HUMAN 1 319
DBREF 6NR0 B 38 356 UNP Q8IXJ6 SIR2_HUMAN 1 319
SEQRES 1 A 319 MET ASP PHE LEU ARG ASN LEU PHE SER GLN THR LEU SER
SEQRES 2 A 319 LEU GLY SER GLN LYS GLU ARG LEU LEU ASP GLU LEU THR
SEQRES 3 A 319 LEU GLU GLY VAL ALA ARG TYR MET GLN SER GLU ARG CYS
SEQRES 4 A 319 ARG ARG VAL ILE CYS LEU VAL GLY ALA GLY ILE SER THR
SEQRES 5 A 319 SER ALA GLY ILE PRO ASP PHE ARG SER PRO SER THR GLY
SEQRES 6 A 319 LEU TYR ASP ASN LEU GLU LYS TYR HIS LEU PRO TYR PRO
SEQRES 7 A 319 GLU ALA ILE PHE GLU ILE SER TYR PHE LYS LYS HIS PRO
SEQRES 8 A 319 GLU PRO PHE PHE ALA LEU ALA LYS GLU LEU TYR PRO GLY
SEQRES 9 A 319 GLN PHE LYS PRO THR ILE CYS HIS TYR PHE MET ARG LEU
SEQRES 10 A 319 LEU LYS ASP LYS GLY LEU LEU LEU ARG CYS TYR THR GLN
SEQRES 11 A 319 ASN ILE ASP THR LEU GLU ARG ILE ALA GLY LEU GLU GLN
SEQRES 12 A 319 GLU ASP LEU VAL GLU ALA HIS GLY THR PHE TYR THR SER
SEQRES 13 A 319 HIS CYS VAL SER ALA SER CYS ARG HIS GLU TYR PRO LEU
SEQRES 14 A 319 SER TRP MET LYS GLU LYS ILE PHE SER GLU VAL THR PRO
SEQRES 15 A 319 LYS CYS GLU ASP CYS GLN SER LEU VAL LYS PRO ASP ILE
SEQRES 16 A 319 VAL PHE PHE GLY GLU SER LEU PRO ALA ARG PHE PHE SER
SEQRES 17 A 319 CYS MET GLN SER ASP PHE LEU LYS VAL ASP LEU LEU LEU
SEQRES 18 A 319 VAL MET GLY THR SER LEU GLN VAL GLN PRO PHE ALA SER
SEQRES 19 A 319 LEU ILE SER LYS ALA PRO LEU SER THR PRO ARG LEU LEU
SEQRES 20 A 319 ILE ASN LYS GLU LYS ALA GLY GLN SER ASP PRO PHE LEU
SEQRES 21 A 319 GLY MET ILE MET GLY LEU GLY GLY GLY MET ASP PHE ASP
SEQRES 22 A 319 SER LYS LYS ALA TYR ARG ASP VAL ALA TRP LEU GLY GLU
SEQRES 23 A 319 CYS ASP GLN GLY CYS LEU ALA LEU ALA GLU LEU LEU GLY
SEQRES 24 A 319 TRP LYS LYS GLU LEU GLU ASP LEU VAL ARG ARG GLU HIS
SEQRES 25 A 319 ALA SER ILE ASP ALA GLN SER
SEQRES 1 B 319 MET ASP PHE LEU ARG ASN LEU PHE SER GLN THR LEU SER
SEQRES 2 B 319 LEU GLY SER GLN LYS GLU ARG LEU LEU ASP GLU LEU THR
SEQRES 3 B 319 LEU GLU GLY VAL ALA ARG TYR MET GLN SER GLU ARG CYS
SEQRES 4 B 319 ARG ARG VAL ILE CYS LEU VAL GLY ALA GLY ILE SER THR
SEQRES 5 B 319 SER ALA GLY ILE PRO ASP PHE ARG SER PRO SER THR GLY
SEQRES 6 B 319 LEU TYR ASP ASN LEU GLU LYS TYR HIS LEU PRO TYR PRO
SEQRES 7 B 319 GLU ALA ILE PHE GLU ILE SER TYR PHE LYS LYS HIS PRO
SEQRES 8 B 319 GLU PRO PHE PHE ALA LEU ALA LYS GLU LEU TYR PRO GLY
SEQRES 9 B 319 GLN PHE LYS PRO THR ILE CYS HIS TYR PHE MET ARG LEU
SEQRES 10 B 319 LEU LYS ASP LYS GLY LEU LEU LEU ARG CYS TYR THR GLN
SEQRES 11 B 319 ASN ILE ASP THR LEU GLU ARG ILE ALA GLY LEU GLU GLN
SEQRES 12 B 319 GLU ASP LEU VAL GLU ALA HIS GLY THR PHE TYR THR SER
SEQRES 13 B 319 HIS CYS VAL SER ALA SER CYS ARG HIS GLU TYR PRO LEU
SEQRES 14 B 319 SER TRP MET LYS GLU LYS ILE PHE SER GLU VAL THR PRO
SEQRES 15 B 319 LYS CYS GLU ASP CYS GLN SER LEU VAL LYS PRO ASP ILE
SEQRES 16 B 319 VAL PHE PHE GLY GLU SER LEU PRO ALA ARG PHE PHE SER
SEQRES 17 B 319 CYS MET GLN SER ASP PHE LEU LYS VAL ASP LEU LEU LEU
SEQRES 18 B 319 VAL MET GLY THR SER LEU GLN VAL GLN PRO PHE ALA SER
SEQRES 19 B 319 LEU ILE SER LYS ALA PRO LEU SER THR PRO ARG LEU LEU
SEQRES 20 B 319 ILE ASN LYS GLU LYS ALA GLY GLN SER ASP PRO PHE LEU
SEQRES 21 B 319 GLY MET ILE MET GLY LEU GLY GLY GLY MET ASP PHE ASP
SEQRES 22 B 319 SER LYS LYS ALA TYR ARG ASP VAL ALA TRP LEU GLY GLU
SEQRES 23 B 319 CYS ASP GLN GLY CYS LEU ALA LEU ALA GLU LEU LEU GLY
SEQRES 24 B 319 TRP LYS LYS GLU LEU GLU ASP LEU VAL ARG ARG GLU HIS
SEQRES 25 B 319 ALA SER ILE ASP ALA GLN SER
HET ZN A 401 1
HET KXJ A 402 34
HET KXG A 403 56
HET NA A 404 1
HET NA A 405 1
HET SO4 A 406 5
HET GOL A 407 12
HET ZN B 401 1
HET KXJ B 402 35
HET KXG B 403 56
HET NA B 404 1
HET NA B 405 1
HET SO4 B 406 5
HET GOL B 407 14
HET GOL B 408 12
HET GOL B 409 12
HETNAM ZN ZINC ION
HETNAM KXJ N~2~-[3-(2-HYDROXYETHOXY)PROPANOYL]-N-PHENYL-N~6~-
HETNAM 2 KXJ TETRADECANETHIOYL-L-LYSINAMIDE
HETNAM KXG [[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4-
HETNAM 2 KXG BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]
HETNAM 3 KXG [(3~{S},4~{R},5~{R})-3,4-BIS(OXIDANYL)-5-SULFANYL-
HETNAM 4 KXG OXOLAN-2-YL]METHYL HYDROGEN PHOSPHATE
HETNAM NA SODIUM ION
HETNAM SO4 SULFATE ION
HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 3 ZN 2(ZN 2+)
FORMUL 4 KXJ 2(C31 H53 N3 O4 S)
FORMUL 5 KXG 2(C15 H23 N5 O13 P2 S)
FORMUL 6 NA 4(NA 1+)
FORMUL 8 SO4 2(O4 S 2-)
FORMUL 9 GOL 4(C3 H8 O3)
FORMUL 19 HOH *134(H2 O)
HELIX 1 AA1 THR A 63 SER A 73 1 11
HELIX 2 AA2 ALA A 85 GLY A 92 5 8
HELIX 3 AA3 GLY A 102 HIS A 111 5 10
HELIX 4 AA4 TYR A 114 PHE A 119 5 6
HELIX 5 AA5 GLU A 120 HIS A 127 1 8
HELIX 6 AA6 PRO A 128 TYR A 139 1 12
HELIX 7 AA7 THR A 146 LYS A 158 1 13
HELIX 8 AA8 THR A 171 ALA A 176 1 6
HELIX 9 AA9 GLU A 179 GLU A 181 5 3
HELIX 10 AB1 LEU A 206 SER A 215 1 10
HELIX 11 AB2 PRO A 240 VAL A 254 1 15
HELIX 12 AB3 SER A 271 ALA A 276 1 6
HELIX 13 AB4 GLU A 323 GLY A 336 1 14
HELIX 14 AB5 TRP A 337 ALA A 354 1 18
HELIX 15 AB6 THR B 63 SER B 73 1 11
HELIX 16 AB7 ALA B 85 GLY B 92 5 8
HELIX 17 AB8 LEU B 103 HIS B 111 5 9
HELIX 18 AB9 TYR B 114 PHE B 119 5 6
HELIX 19 AC1 GLU B 120 HIS B 127 1 8
HELIX 20 AC2 PRO B 128 TYR B 139 1 12
HELIX 21 AC3 THR B 146 LYS B 158 1 13
HELIX 22 AC4 THR B 171 ALA B 176 1 6
HELIX 23 AC5 GLU B 179 GLU B 181 5 3
HELIX 24 AC6 LEU B 206 SER B 215 1 10
HELIX 25 AC7 PRO B 240 VAL B 254 1 15
HELIX 26 AC8 SER B 271 ALA B 276 1 6
HELIX 27 AC9 GLU B 323 LEU B 335 1 13
HELIX 28 AD1 TRP B 337 ASP B 353 1 17
SHEET 1 AA1 6 LEU A 183 GLU A 185 0
SHEET 2 AA1 6 LEU A 161 THR A 166 1 N CYS A 164 O VAL A 184
SHEET 3 AA1 6 VAL A 79 VAL A 83 1 N CYS A 81 O TYR A 165
SHEET 4 AA1 6 LEU A 256 MET A 260 1 O LEU A 258 N ILE A 80
SHEET 5 AA1 6 ARG A 282 ASN A 286 1 O LEU A 283 N LEU A 257
SHEET 6 AA1 6 ASP A 317 LEU A 321 1 O TRP A 320 N LEU A 284
SHEET 1 AA2 3 GLU A 203 PRO A 205 0
SHEET 2 AA2 3 GLY A 188 CYS A 195 -1 N SER A 193 O TYR A 204
SHEET 3 AA2 3 VAL A 228 ILE A 232 -1 O ASP A 231 N THR A 192
SHEET 1 AA3 6 LEU B 183 GLU B 185 0
SHEET 2 AA3 6 LEU B 161 THR B 166 1 N CYS B 164 O VAL B 184
SHEET 3 AA3 6 VAL B 79 VAL B 83 1 N CYS B 81 O TYR B 165
SHEET 4 AA3 6 LEU B 256 MET B 260 1 O LEU B 256 N ILE B 80
SHEET 5 AA3 6 ARG B 282 ASN B 286 1 O LEU B 283 N LEU B 257
SHEET 6 AA3 6 ASP B 317 LEU B 321 1 O TRP B 320 N LEU B 284
SHEET 1 AA4 3 GLU B 203 PRO B 205 0
SHEET 2 AA4 3 GLY B 188 CYS B 195 -1 N SER B 193 O TYR B 204
SHEET 3 AA4 3 VAL B 228 ILE B 232 -1 O ASP B 231 N THR B 192
LINK C6 KXJ A 402 O2D KXG A 403 1555 1555 1.45
LINK C6 KXJ B 402 O2D KXG B 403 1555 1555 1.46
LINK SG CYS A 195 ZN ZN A 401 1555 1555 2.34
LINK SG CYS A 200 ZN ZN A 401 1555 1555 2.32
LINK SG CYS A 221 ZN ZN A 401 1555 1555 2.34
LINK SG CYS A 224 ZN ZN A 401 1555 1555 2.32
LINK OE1 GLU A 288 NA NA A 404 1555 1555 2.34
LINK OD1 ASN B 168 NA NA B 404 1555 1555 2.72
LINK SG CYS B 195 ZN ZN B 401 1555 1555 2.33
LINK SG CYS B 200 ZN ZN B 401 1555 1555 2.33
LINK SG CYS B 221 ZN ZN B 401 1555 1555 2.30
LINK SG CYS B 224 ZN ZN B 401 1555 1555 2.32
LINK OE2 GLU B 288 NA NA B 405 1555 1555 2.24
LINK O2N KXG B 403 NA NA B 404 1555 1555 2.68
LINK O3D KXG B 403 NA NA B 404 1555 1555 2.97
LINK NA NA B 404 O HOH B 554 1555 1555 2.85
LINK NA NA B 405 O HOH B 501 1555 1555 2.48
CISPEP 1 GLN A 267 PRO A 268 0 5.29
CISPEP 2 GLN B 267 PRO B 268 0 9.63
SITE 1 AC1 4 CYS A 195 CYS A 200 CYS A 221 CYS A 224
SITE 1 AC2 2 GLU A 288 KXG A 403
SITE 1 AC3 2 GLY A 306 ASP A 308
SITE 1 AC4 3 ARG A 78 LEU A 162 LYS A 253
SITE 1 AC5 2 TRP A 320 LEU A 321
SITE 1 AC6 4 CYS B 195 CYS B 200 CYS B 221 CYS B 224
SITE 1 AC7 6 ALA B 85 PHE B 96 GLN B 167 ASN B 168
SITE 2 AC7 6 KXG B 403 HOH B 554
SITE 1 AC8 3 GLU B 288 KXG B 403 HOH B 501
SITE 1 AC9 7 GLN A 292 HOH A 531 ARG B 97 TYR B 104
SITE 2 AC9 7 GLU B 116 GLN B 265 HOH B 524
SITE 1 AD1 2 TRP B 320 LEU B 321
SITE 1 AD2 4 GLU B 333 GLY B 336 LYS B 338 LYS B 339
SITE 1 AD3 32 GLY A 84 ALA A 85 GLY A 86 THR A 89
SITE 2 AD3 32 ASP A 95 PHE A 96 ARG A 97 PHE A 119
SITE 3 AD3 32 LEU A 138 PRO A 140 GLN A 167 HIS A 187
SITE 4 AD3 32 ILE A 232 VAL A 233 PHE A 235 GLY A 236
SITE 5 AD3 32 GLU A 237 SER A 238 LEU A 239 GLY A 261
SITE 6 AD3 32 THR A 262 SER A 263 GLN A 267 PRO A 268
SITE 7 AD3 32 ASN A 286 LYS A 287 GLU A 288 GLY A 322
SITE 8 AD3 32 GLU A 323 CYS A 324 NA A 404 HOH A 536
SITE 1 AD4 33 GLY B 84 ALA B 85 GLY B 86 THR B 89
SITE 2 AD4 33 ASP B 95 PHE B 96 ARG B 97 SER B 98
SITE 3 AD4 33 PHE B 119 PHE B 131 LEU B 134 LEU B 138
SITE 4 AD4 33 GLN B 167 HIS B 187 ILE B 232 VAL B 233
SITE 5 AD4 33 PHE B 235 GLY B 236 GLU B 237 GLY B 261
SITE 6 AD4 33 THR B 262 SER B 263 VAL B 266 GLN B 267
SITE 7 AD4 33 PRO B 268 ASN B 286 LYS B 287 GLU B 288
SITE 8 AD4 33 GLY B 322 GLU B 323 CYS B 324 NA B 404
SITE 9 AD4 33 NA B 405
CRYST1 82.310 76.840 114.461 90.00 95.87 90.00 I 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012149 0.000000 0.001250 0.00000
SCALE2 0.000000 0.013014 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008783 0.00000