HEADER OXIDOREDUCTASE 24-JAN-19 6NS3 TITLE CRYSTAL STRUCTURE OF FUNGAL LIPOXYGENASE FROM FUSARIUM GRAMINEARUM. TITLE 2 I222 CRYSTAL FORM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIBBERELLA ZEAE (STRAIN PH-1 / ATCC MYA-4620 / SOURCE 3 FGSC 9075 / NRRL 31084); SOURCE 4 ORGANISM_COMMON: WHEAT HEAD BLIGHT FUNGUS; SOURCE 5 ORGANISM_TAXID: 229533; SOURCE 6 STRAIN: PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084; SOURCE 7 GENE: FG02216.1, FGRAMPH1_01T05341; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-28B KEYWDS LIPOXYGENASE, FUNGUS, FE COORDINATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PAKHOMOVA,W.E.BOEGLIN,D.B.NEAU,S.G.BARTLETT,A.R.BRASH,M.E.NEWCOMER REVDAT 4 11-OCT-23 6NS3 1 REMARK REVDAT 3 18-DEC-19 6NS3 1 REMARK REVDAT 2 24-APR-19 6NS3 1 JRNL REVDAT 1 27-MAR-19 6NS3 0 JRNL AUTH S.PAKHOMOVA,W.E.BOEGLIN,D.B.NEAU,S.G.BARTLETT,A.R.BRASH, JRNL AUTH 2 M.E.NEWCOMER JRNL TITL AN ENSEMBLE OF LIPOXYGENASE STRUCTURES REVEALS NOVEL JRNL TITL 2 CONFORMATIONS OF THE FE COORDINATION SPHERE. JRNL REF PROTEIN SCI. V. 28 920 2019 JRNL REFN ESSN 1469-896X JRNL PMID 30861228 JRNL DOI 10.1002/PRO.3602 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 19085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 597 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1200 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.4660 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.12000 REMARK 3 B22 (A**2) : 2.87000 REMARK 3 B33 (A**2) : -4.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.404 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.466 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 60.285 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5172 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4693 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7026 ; 1.206 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10941 ; 1.058 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 631 ; 6.516 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 263 ;36.565 ;23.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 863 ;16.023 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.937 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 693 ; 0.039 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5771 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1048 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2530 ; 0.422 ; 4.040 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2529 ; 0.422 ; 4.040 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3159 ; 0.742 ; 6.060 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3160 ; 0.742 ; 6.060 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2642 ; 0.294 ; 4.045 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2640 ; 0.284 ; 4.045 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3867 ; 0.515 ; 6.056 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5843 ; 1.476 ;47.261 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5842 ; 1.473 ;47.258 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 840 REMARK 3 ORIGIN FOR THE GROUP (A): -29.7567 -35.4911 -26.0961 REMARK 3 T TENSOR REMARK 3 T11: 0.4339 T22: 0.0722 REMARK 3 T33: 0.1969 T12: -0.1195 REMARK 3 T13: 0.2625 T23: -0.0999 REMARK 3 L TENSOR REMARK 3 L11: 1.4031 L22: 3.0517 REMARK 3 L33: 5.2057 L12: -0.0207 REMARK 3 L13: -1.9381 L23: 0.2721 REMARK 3 S TENSOR REMARK 3 S11: 0.2570 S12: -0.2380 S13: 0.2957 REMARK 3 S21: -0.4292 S22: 0.2006 S23: -0.4729 REMARK 3 S31: -0.4724 S32: 0.5287 S33: -0.4576 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6NS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CAMD REMARK 200 BEAMLINE : GCPCC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.38079 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19682 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.840 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3RDE REMARK 200 REMARK 200 REMARK: PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG3350, 0.35 M CALCIUM CHLORIDE, REMARK 280 0.1 M TRIS, PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.46550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.76850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 93.12450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.46550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.76850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.12450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.46550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.76850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.12450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.46550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.76850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.12450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 GLY A -22 REMARK 465 ARG A -21 REMARK 465 ASP A -20 REMARK 465 PRO A -19 REMARK 465 ASN A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 VAL A -14 REMARK 465 ASP A -13 REMARK 465 LYS A -12 REMARK 465 LEU A -11 REMARK 465 ALA A -10 REMARK 465 ALA A -9 REMARK 465 ALA A -8 REMARK 465 LEU A -7 REMARK 465 GLU A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 VAL A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 VAL A 8 REMARK 465 VAL A 9 REMARK 465 PRO A 10 REMARK 465 PRO A 11 REMARK 465 ARG A 12 REMARK 465 SER A 13 REMARK 465 LYS A 14 REMARK 465 LEU A 15 REMARK 465 ASP A 16 REMARK 465 SER A 17 REMARK 465 ILE A 18 REMARK 465 LEU A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 GLU A 24 REMARK 465 HIS A 25 REMARK 465 ASN A 26 REMARK 465 ILE A 27 REMARK 465 ASP A 28 REMARK 465 HIS A 29 REMARK 465 ASP A 30 REMARK 465 PRO A 31 REMARK 465 LEU A 32 REMARK 465 GLU A 33 REMARK 465 VAL A 34 REMARK 465 TRP A 35 REMARK 465 ASP A 36 REMARK 465 LYS A 37 REMARK 465 GLY A 38 REMARK 465 VAL A 39 REMARK 465 PHE A 40 REMARK 465 LEU A 41 REMARK 465 ASN A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 LEU A 45 REMARK 465 LYS A 46 REMARK 465 GLN A 47 REMARK 465 GLY A 48 REMARK 465 ILE A 49 REMARK 465 ALA A 50 REMARK 465 LEU A 51 REMARK 465 SER A 52 REMARK 465 THR A 53 REMARK 465 ASN A 54 REMARK 465 GLU A 55 REMARK 465 ASN A 56 REMARK 465 GLY A 57 REMARK 465 THR A 58 REMARK 465 LEU A 59 REMARK 465 ASP A 60 REMARK 465 GLY A 61 REMARK 465 GLU A 62 REMARK 465 LEU A 63 REMARK 465 VAL A 64 REMARK 465 ALA A 65 REMARK 465 ASP A 66 REMARK 465 GLU A 67 REMARK 465 GLY A 68 REMARK 465 LEU A 69 REMARK 465 LYS A 70 REMARK 465 LYS A 71 REMARK 465 GLY A 72 REMARK 465 SER A 73 REMARK 465 TYR A 74 REMARK 465 LYS A 75 REMARK 465 GLY A 76 REMARK 465 THR A 77 REMARK 465 ARG A 78 REMARK 465 LEU A 79 REMARK 465 ALA A 80 REMARK 465 LEU A 81 REMARK 465 THR A 82 REMARK 465 GLU A 83 REMARK 465 ILE A 84 REMARK 465 TYR A 85 REMARK 465 SER A 86 REMARK 465 ILE A 87 REMARK 465 LEU A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 ALA A 91 REMARK 465 ALA A 92 REMARK 465 VAL A 93 REMARK 465 SER A 94 REMARK 465 HIS A 95 REMARK 465 PHE A 96 REMARK 465 ASP A 97 REMARK 465 LYS A 98 REMARK 465 ARG A 99 REMARK 465 GLY A 100 REMARK 465 THR A 211 REMARK 465 ASP A 212 REMARK 465 GLY A 213 REMARK 465 ASP A 214 REMARK 465 ALA A 215 REMARK 465 SER A 216 REMARK 465 ASN A 217 REMARK 465 GLN A 218 REMARK 465 ASP A 219 REMARK 465 ASN A 220 REMARK 465 LEU A 221 REMARK 465 ASN A 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 101 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 THR A 321 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 600 O HOH A 901 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 134 109.93 -53.09 REMARK 500 GLN A 160 109.24 -52.48 REMARK 500 ASP A 226 -142.08 -118.39 REMARK 500 ASP A 238 53.02 -90.54 REMARK 500 VAL A 404 -71.20 -73.20 REMARK 500 ALA A 405 -73.06 -71.06 REMARK 500 HIS A 407 -70.89 -96.52 REMARK 500 THR A 411 -83.72 -102.07 REMARK 500 PHE A 441 118.21 -39.90 REMARK 500 VAL A 458 -71.13 -138.13 REMARK 500 GLN A 543 -53.47 -120.93 REMARK 500 THR A 565 -69.93 -106.78 REMARK 500 SER A 593 -86.35 -113.33 REMARK 500 TYR A 601 31.01 -92.01 REMARK 500 LYS A 613 84.57 -156.49 REMARK 500 TYR A 664 115.43 -26.49 REMARK 500 ASN A 695 91.62 -69.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 407 NE2 REMARK 620 2 HIS A 412 NE2 96.0 REMARK 620 3 HIS A 596 NE2 120.2 97.3 REMARK 620 4 ASN A 600 OD1 93.1 168.8 83.6 REMARK 620 5 ILE A 745 O 155.4 98.2 77.6 71.1 REMARK 620 6 HOH A 901 O 81.9 117.5 137.3 57.5 73.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NS2 RELATED DB: PDB REMARK 900 RELATED ID: 6NS4 RELATED DB: PDB REMARK 900 RELATED ID: 6NS5 RELATED DB: PDB REMARK 900 RELATED ID: 6NS6 RELATED DB: PDB DBREF 6NS3 A 1 745 UNP I1REW2 I1REW2_GIBZE 1 745 SEQADV 6NS3 MET A -23 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 GLY A -22 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 ARG A -21 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 ASP A -20 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 PRO A -19 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 ASN A -18 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 SER A -17 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 SER A -16 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 SER A -15 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 VAL A -14 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 ASP A -13 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 LYS A -12 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 LEU A -11 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 ALA A -10 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 ALA A -9 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 ALA A -8 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 LEU A -7 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 GLU A -6 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 HIS A -5 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 HIS A -4 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 HIS A -3 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 HIS A -2 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 HIS A -1 UNP I1REW2 EXPRESSION TAG SEQADV 6NS3 HIS A 0 UNP I1REW2 EXPRESSION TAG SEQRES 1 A 769 MET GLY ARG ASP PRO ASN SER SER SER VAL ASP LYS LEU SEQRES 2 A 769 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS MET SER SEQRES 3 A 769 ALA VAL ALA SER HIS VAL VAL PRO PRO ARG SER LYS LEU SEQRES 4 A 769 ASP SER ILE LEU SER SER GLY LEU GLU HIS ASN ILE ASP SEQRES 5 A 769 HIS ASP PRO LEU GLU VAL TRP ASP LYS GLY VAL PHE LEU SEQRES 6 A 769 ASN GLU LEU LEU LYS GLN GLY ILE ALA LEU SER THR ASN SEQRES 7 A 769 GLU ASN GLY THR LEU ASP GLY GLU LEU VAL ALA ASP GLU SEQRES 8 A 769 GLY LEU LYS LYS GLY SER TYR LYS GLY THR ARG LEU ALA SEQRES 9 A 769 LEU THR GLU ILE TYR SER ILE LEU GLU ASP ALA ALA VAL SEQRES 10 A 769 SER HIS PHE ASP LYS ARG GLY TYR GLU PRO ILE PHE PRO SEQRES 11 A 769 VAL LYS ARG GLU LEU ASP LEU LYS LYS ARG ILE TYR GLN SEQRES 12 A 769 TRP SER ASP GLY THR ASP GLY TYR PRO PRO HIS LEU LYS SEQRES 13 A 769 VAL ASP GLY ASN ASP GLU ALA ASN LEU PRO ALA ASP GLU SEQRES 14 A 769 ARG GLN SER LYS PRO GLY SER ALA ARG SER GLU GLY VAL SEQRES 15 A 769 GLY GLN ILE PHE ASP MET GLN GLU THR ALA PHE VAL SER SEQRES 16 A 769 LYS ILE ALA GLN ALA VAL SER PHE ILE ILE PRO LYS ASP SEQRES 17 A 769 ILE ASP HIS GLU ASN THR PRO TYR LYS GLY PRO THR LEU SEQRES 18 A 769 ALA ASP VAL GLU LYS PHE ASN LYS ALA GLN PHE PRO LYS SEQRES 19 A 769 THR ASP GLY ASP ALA SER ASN GLN ASP ASN LEU ASN LYS SEQRES 20 A 769 ALA ALA ASP ILE MET LYS GLY ARG ASN ILE GLY GLU TYR SEQRES 21 A 769 ASP ASP TRP TYR SER ASP ALA ARG PHE ALA GLN GLN HIS SEQRES 22 A 769 PHE SER GLY VAL ASN PRO SER THR ILE GLU THR ALA SER SEQRES 23 A 769 GLN ASP LYS ILE LYS GLU TYR ILE SER GLU ALA GLN LYS SEQRES 24 A 769 GLN GLY LEU ASP LYS VAL LYS ALA ILE LEU GLU ASP GLY SEQRES 25 A 769 LYS ASP ILE LEU ILE GLN ASP TYR SER TYR PHE ARG GLU SEQRES 26 A 769 ALA THR GLY ALA THR ASN GLU GLN ILE PHE GLN ASN THR SEQRES 27 A 769 VAL TYR GLU LEU LYS GLY THR THR PRO THR GLY LYS THR SEQRES 28 A 769 THR SER ARG TYR ALA ALA ALA SER VAL VAL ILE PHE GLN SEQRES 29 A 769 LEU HIS GLU ASP GLY ARG LEU HIS PRO LEU ALA ILE THR SEQRES 30 A 769 LEU ASP TYR LYS GLY SER LEU ASP ASN SER ILE THR ILE SEQRES 31 A 769 PHE ASN ARG ARG LEU SER PRO ASP ASP THR CYS ASP ILE SEQRES 32 A 769 ALA GLU LYS GLU ASP TRP PRO TRP ARG TYR ALA LYS THR SEQRES 33 A 769 VAL ALA GLN THR ALA ASP TRP ALA ARG HIS GLU VAL ALA SEQRES 34 A 769 THR HIS LEU VAL ASP THR HIS MET ILE GLU GLU ALA ILE SEQRES 35 A 769 ILE VAL ALA THR ASN ARG ILE ILE PRO GLU GLY GLU LEU SEQRES 36 A 769 LEU TYR GLU ILE LEU SER PRO HIS TRP PHE ARG THR LEU SEQRES 37 A 769 SER LEU ASN ALA ALA ALA ARG LYS LEU LEU VAL PRO GLY SEQRES 38 A 769 VAL ILE ALA ARG ILE ALA GLY PHE GLY PRO THR SER PRO SEQRES 39 A 769 SER LEU ASP PHE LYS GLY ASN ASN ALA PHE LYS LEU ILE SEQRES 40 A 769 ASP TRP SER TYR LYS ASN PHE ASN PHE GLN ASP LYS TYR SEQRES 41 A 769 ILE PRO ASN ASP LEU LYS LYS ARG GLY PHE ASP ILE LYS SEQRES 42 A 769 GLY ASP LYS SER GLY LYS TYR LYS ASN TYR PRO TYR ALA SEQRES 43 A 769 ASN ASP MET TYR LEU LEU TRP GLY ILE ILE ARG ASN PHE SEQRES 44 A 769 VAL LYS THR VAL ILE GLU SER GLN TYR THR SER ASP HIS SEQRES 45 A 769 VAL VAL GLN LYS ASP PRO TYR ILE GLY GLY TRP CYS LYS SEQRES 46 A 769 GLU ILE GLN THR ASN GLY GLN ILE PRO THR PHE PRO THR SEQRES 47 A 769 ILE THR THR VAL GLU GLN LEU ILE ASP ALA VAL THR MET SEQRES 48 A 769 CYS ILE HIS THR ALA SER PRO GLN HIS THR ALA VAL ASN SEQRES 49 A 769 TYR LEU GLN ASP TYR TYR TYR SER PHE VAL PRO ALA LYS SEQRES 50 A 769 PRO PRO ALA LEU CYS THR PRO LEU PRO GLN ASP LEU SER SEQRES 51 A 769 ALA LEU GLN GLY TYR THR GLU LYS ASP LEU THR ALA ALA SEQRES 52 A 769 LEU PRO ILE GLY THR GLU ASP MET LYS TRP LYS ASP TRP SEQRES 53 A 769 LEU LEU ALA ALA GLN LEU PRO GLU LEU LEU SER TYR LYS SEQRES 54 A 769 VAL GLN GLN ASP TYR ASN LEU ILE THR TYR ALA LYS SER SEQRES 55 A 769 LEU TYR ASN VAL ASN LYS ASN ARG THR ILE THR GLU ASN SEQRES 56 A 769 THR LYS PHE ASN CYS LYS THR ILE LYS LYS ALA ALA ALA SEQRES 57 A 769 ASP PHE TYR SER HIS LEU LYS SER ALA GLY VAL GLU PHE SEQRES 58 A 769 GLU ASN TYR SER LYS GLY GLN THR ALA GLY THR VAL GLU SEQRES 59 A 769 TYR PRO VAL LEU GLN PRO GLU THR THR ALA ILE SER ILE SEQRES 60 A 769 LEU ILE HET FE2 A 801 1 HETNAM FE2 FE (II) ION FORMUL 2 FE2 FE 2+ FORMUL 3 HOH *8(H2 O) HELIX 1 AA1 PHE A 105 TYR A 118 1 14 HELIX 2 AA2 VAL A 133 LEU A 141 5 9 HELIX 3 AA3 PRO A 142 ARG A 146 5 5 HELIX 4 AA4 ASP A 163 ALA A 176 1 14 HELIX 5 AA5 THR A 196 ALA A 206 1 11 HELIX 6 AA6 ASN A 232 TYR A 236 5 5 HELIX 7 AA7 SER A 241 GLY A 252 1 12 HELIX 8 AA8 SER A 262 GLN A 276 1 15 HELIX 9 AA9 LEU A 278 GLY A 288 1 11 HELIX 10 AB1 TYR A 298 GLY A 304 1 7 HELIX 11 AB2 ASP A 384 VAL A 404 1 21 HELIX 12 AB3 THR A 411 ILE A 426 1 16 HELIX 13 AB4 GLU A 430 SER A 437 1 8 HELIX 14 AB5 PRO A 438 PHE A 441 5 4 HELIX 15 AB6 ARG A 442 LEU A 453 1 12 HELIX 16 AB7 LEU A 453 VAL A 458 1 6 HELIX 17 AB8 VAL A 458 ALA A 463 1 6 HELIX 18 AB9 ASP A 473 GLY A 476 5 4 HELIX 19 AC1 ASN A 477 ASN A 489 1 13 HELIX 20 AC2 TYR A 496 ARG A 504 1 9 HELIX 21 AC3 ASP A 507 ASP A 511 5 5 HELIX 22 AC4 GLY A 514 ASN A 518 5 5 HELIX 23 AC5 TYR A 519 SER A 542 1 24 HELIX 24 AC6 SER A 546 LYS A 552 1 7 HELIX 25 AC7 TYR A 555 ASN A 566 1 12 HELIX 26 AC8 THR A 577 SER A 593 1 17 HELIX 27 AC9 SER A 593 TYR A 601 1 9 HELIX 28 AD1 LEU A 602 PHE A 609 1 8 HELIX 29 AD2 ASP A 624 GLN A 629 1 6 HELIX 30 AD3 THR A 632 LEU A 640 1 9 HELIX 31 AD4 THR A 644 ASP A 646 5 3 HELIX 32 AD5 MET A 647 TYR A 664 1 18 HELIX 33 AD6 GLN A 667 TYR A 670 5 4 HELIX 34 AD7 ASN A 671 LEU A 679 1 9 HELIX 35 AD8 THR A 689 ASN A 691 5 3 HELIX 36 AD9 ASN A 695 GLY A 723 1 29 HELIX 37 AE1 GLN A 735 THR A 739 5 5 SHEET 1 AA1 5 GLU A 259 THR A 260 0 SHEET 2 AA1 5 ILE A 291 ASP A 295 -1 O ILE A 293 N GLU A 259 SHEET 3 AA1 5 VAL A 336 LEU A 341 -1 O PHE A 339 N LEU A 292 SHEET 4 AA1 5 LEU A 347 THR A 353 -1 O LEU A 350 N ILE A 338 SHEET 5 AA1 5 THR A 365 PHE A 367 -1 O ILE A 366 N ILE A 352 SHEET 1 AA2 3 THR A 322 ALA A 332 0 SHEET 2 AA2 3 PHE A 311 LYS A 319 -1 N LYS A 319 O THR A 322 SHEET 3 AA2 3 THR A 468 SER A 469 1 O SER A 469 N TYR A 316 SHEET 1 AA3 2 TYR A 680 ASN A 681 0 SHEET 2 AA3 2 ARG A 686 THR A 687 -1 O ARG A 686 N ASN A 681 LINK NE2 HIS A 407 FE FE2 A 801 1555 1555 2.11 LINK NE2 HIS A 412 FE FE2 A 801 1555 1555 2.10 LINK NE2 HIS A 596 FE FE2 A 801 1555 1555 2.11 LINK OD1 ASN A 600 FE FE2 A 801 1555 1555 2.22 LINK O ILE A 745 FE FE2 A 801 1555 1555 2.25 LINK FE FE2 A 801 O HOH A 901 1555 1555 2.16 CISPEP 1 GLY A 194 PRO A 195 0 1.77 CISPEP 2 GLY A 466 PRO A 467 0 6.07 CISPEP 3 SER A 469 PRO A 470 0 -1.14 SITE 1 AC1 6 HIS A 407 HIS A 412 HIS A 596 ASN A 600 SITE 2 AC1 6 ILE A 745 HOH A 901 CRYST1 92.931 95.537 186.249 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010761 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005369 0.00000