HEADER VIRAL PROTEIN 24-JAN-19 6NSG TITLE CRYSTAL STRUCTURE OF THE A/BRISBANE/10/2007 (H3N2) INFLUENZA VIRUS TITLE 2 HEMAGGLUTININ G186V/L194P MUTANT IN COMPLEX WITH 6'-SLNLN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1 CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 27-345; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HEMAGGLUTININ HA2 CHAIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 330-505; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_COMMON: A/BRISBANE/10/2007(H3N2); SOURCE 4 ORGANISM_TAXID: 476294; SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 11 ORGANISM_COMMON: A/BRISBANE/10/2007(H3N2); SOURCE 12 ORGANISM_TAXID: 476294; SOURCE 13 GENE: HA; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.C.WU,I.A.WILSON REVDAT 7 20-NOV-24 6NSG 1 REMARK REVDAT 6 11-OCT-23 6NSG 1 HETSYN LINK REVDAT 5 29-JUL-20 6NSG 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 18-DEC-19 6NSG 1 REMARK REVDAT 3 26-JUN-19 6NSG 1 JRNL REVDAT 2 19-JUN-19 6NSG 1 JRNL REVDAT 1 24-APR-19 6NSG 0 JRNL AUTH N.C.WU,H.LV,A.J.THOMPSON,D.C.WU,W.W.S.NG,R.U.KADAM,C.W.LIN, JRNL AUTH 2 C.M.NYCHOLAT,R.MCBRIDE,W.LIANG,J.C.PAULSON,C.K.P.MOK, JRNL AUTH 3 I.A.WILSON JRNL TITL PREVENTING AN ANTIGENICALLY DISRUPTIVE MUTATION IN EGG-BASED JRNL TITL 2 H3N2 SEASONAL INFLUENZA VACCINES BY MUTATIONAL JRNL TITL 3 INCOMPATIBILITY. JRNL REF CELL HOST MICROBE V. 25 836 2019 JRNL REFN ESSN 1934-6069 JRNL PMID 31151913 JRNL DOI 10.1016/J.CHOM.2019.04.013 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1448 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2057 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3869 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 218 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.68000 REMARK 3 B22 (A**2) : 1.68000 REMARK 3 B33 (A**2) : -5.45000 REMARK 3 B12 (A**2) : 0.84000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.285 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.220 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.994 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4224 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3742 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5763 ; 1.478 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8766 ; 0.940 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 500 ; 6.473 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;37.435 ;24.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 683 ;15.346 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 663 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4590 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 816 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1970 ; 1.329 ; 3.843 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1969 ; 1.329 ; 3.842 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2462 ; 2.337 ; 5.759 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2463 ; 2.337 ; 5.759 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2254 ; 2.167 ; 4.744 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2254 ; 2.165 ; 4.745 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3296 ; 3.839 ; 7.084 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 16603 ; 9.026 ;77.419 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 16603 ; 9.026 ;77.416 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): -44.4596 7.3275 65.9274 REMARK 3 T TENSOR REMARK 3 T11: 0.1994 T22: 0.1492 REMARK 3 T33: 0.2682 T12: 0.0201 REMARK 3 T13: -0.0856 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 0.6529 L22: 0.5448 REMARK 3 L33: 2.5411 L12: -0.0505 REMARK 3 L13: 0.2365 L23: -0.4445 REMARK 3 S TENSOR REMARK 3 S11: 0.1069 S12: -0.2785 S13: -0.2015 REMARK 3 S21: 0.1952 S22: 0.0938 S23: -0.0330 REMARK 3 S31: 0.2566 S32: 0.0522 S33: -0.2006 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 155 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): -33.5160 16.6033 92.9569 REMARK 3 T TENSOR REMARK 3 T11: 0.6287 T22: 0.8317 REMARK 3 T33: 0.3551 T12: -0.0706 REMARK 3 T13: -0.1204 T23: -0.0928 REMARK 3 L TENSOR REMARK 3 L11: 2.8315 L22: 4.5262 REMARK 3 L33: 2.0333 L12: -1.3437 REMARK 3 L13: 2.2464 L23: -0.0970 REMARK 3 S TENSOR REMARK 3 S11: -0.2926 S12: -0.6910 S13: 0.0198 REMARK 3 S21: 0.9132 S22: 0.3647 S23: -0.1428 REMARK 3 S31: -0.0469 S32: -0.4757 S33: -0.0720 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): -48.5332 11.8274 104.6673 REMARK 3 T TENSOR REMARK 3 T11: 2.2003 T22: 1.5709 REMARK 3 T33: 1.9935 T12: 0.0348 REMARK 3 T13: -0.3016 T23: -0.1875 REMARK 3 L TENSOR REMARK 3 L11: 6.6205 L22: 12.8139 REMARK 3 L33: 1.1801 L12: 9.1959 REMARK 3 L13: -2.7924 L23: -3.8856 REMARK 3 S TENSOR REMARK 3 S11: -0.2385 S12: -0.1511 S13: -1.5382 REMARK 3 S21: -0.1530 S22: -0.3571 S23: -2.0053 REMARK 3 S31: 0.0749 S32: 0.0614 S33: 0.5956 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 198 A 325 REMARK 3 ORIGIN FOR THE GROUP (A): -44.6506 13.9765 69.4862 REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.2216 REMARK 3 T33: 0.2265 T12: 0.0049 REMARK 3 T13: -0.0692 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.0529 L22: 0.6687 REMARK 3 L33: 2.5304 L12: -0.0536 REMARK 3 L13: 0.8180 L23: -0.3796 REMARK 3 S TENSOR REMARK 3 S11: 0.0608 S12: -0.4273 S13: -0.0885 REMARK 3 S21: 0.2819 S22: 0.0865 S23: -0.0551 REMARK 3 S31: -0.0467 S32: -0.0976 S33: -0.1473 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 60 REMARK 3 ORIGIN FOR THE GROUP (A): -48.0192 12.0091 17.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.0874 REMARK 3 T33: 0.2996 T12: 0.0235 REMARK 3 T13: -0.0261 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 0.7480 L22: 0.9583 REMARK 3 L33: 3.7046 L12: 0.0670 REMARK 3 L13: -0.0239 L23: 0.2453 REMARK 3 S TENSOR REMARK 3 S11: 0.0622 S12: -0.0152 S13: 0.0179 REMARK 3 S21: -0.0221 S22: 0.0029 S23: -0.0308 REMARK 3 S31: 0.4028 S32: 0.2338 S33: -0.0651 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 61 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): -51.4074 21.2900 44.0177 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1342 REMARK 3 T33: 0.2972 T12: -0.0092 REMARK 3 T13: -0.0085 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.1869 L22: 0.2945 REMARK 3 L33: 3.2414 L12: -0.0518 REMARK 3 L13: -0.1404 L23: 0.3106 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.0455 S13: -0.0961 REMARK 3 S21: 0.0260 S22: 0.0020 S23: 0.0325 REMARK 3 S31: 0.1180 S32: -0.0825 S33: -0.0012 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 124 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): -46.2448 17.0679 -6.1005 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.1567 REMARK 3 T33: 0.2373 T12: 0.0100 REMARK 3 T13: 0.0042 T23: -0.0570 REMARK 3 L TENSOR REMARK 3 L11: 2.2605 L22: 3.1642 REMARK 3 L33: 2.8905 L12: -0.1750 REMARK 3 L13: -0.6201 L23: -0.4350 REMARK 3 S TENSOR REMARK 3 S11: 0.0854 S12: 0.3505 S13: -0.0133 REMARK 3 S21: -0.2917 S22: -0.0438 S23: -0.1430 REMARK 3 S31: 0.1404 S32: -0.0563 S33: -0.0416 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6NSG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 712 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 712 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29754 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 25.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.92000 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 6AOQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CAPS PH 10.5 AND 29% PEG 400, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.13200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.94372 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 127.88133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.13200 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 28.94372 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 127.88133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.13200 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 28.94372 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 127.88133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.13200 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 28.94372 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 127.88133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.13200 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 28.94372 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 127.88133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.13200 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 28.94372 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 127.88133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.88745 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 255.76267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 57.88745 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 255.76267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 57.88745 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 255.76267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 57.88745 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 255.76267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 57.88745 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 255.76267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 57.88745 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 255.76267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 45030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -50.13200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 86.83117 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -100.26400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 326 REMARK 465 GLN A 327 REMARK 465 THR A 328 REMARK 465 ARG A 329 REMARK 465 LYS B 174 REMARK 465 GLY B 175 REMARK 465 VAL B 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 76.81 -116.26 REMARK 500 GLU A 62 -110.74 58.74 REMARK 500 ASN A 96 44.03 -141.33 REMARK 500 CYS A 97 -150.92 -135.11 REMARK 500 TYR A 161 110.27 -167.66 REMARK 500 ASN A 165 66.58 -161.59 REMARK 500 THR A 187 -157.25 -146.78 REMARK 500 ALA A 196 39.47 72.45 REMARK 500 ALA B 5 -69.36 -90.41 REMARK 500 PHE B 63 -118.49 -125.48 REMARK 500 ARG B 127 -121.52 51.33 REMARK 500 TYR B 141 37.21 -93.91 REMARK 500 ASP B 145 -179.47 -64.46 REMARK 500 PHE B 171 44.32 -104.79 REMARK 500 REMARK 500 REMARK: NULL DBREF 6NSG A 11 329 UNP C3PR70 C3PR70_9INFA 27 345 DBREF 6NSG B 1 176 UNP A8W891 A8W891_9INFA 330 505 SEQADV 6NSG PRO A 9 UNP C3PR70 EXPRESSION TAG SEQADV 6NSG GLY A 10 UNP C3PR70 EXPRESSION TAG SEQADV 6NSG ASP A 190 UNP C3PR70 ASN 206 CONFLICT SEQADV 6NSG PRO A 194 UNP C3PR70 LEU 210 ENGINEERED MUTATION SEQRES 1 A 321 PRO GLY ALA THR LEU CYS LEU GLY HIS HIS ALA VAL PRO SEQRES 2 A 321 ASN GLY THR ILE VAL LYS THR ILE THR ASN ASP GLN ILE SEQRES 3 A 321 GLU VAL THR ASN ALA THR GLU LEU VAL GLN SER SER SER SEQRES 4 A 321 THR GLY GLU ILE CYS ASP SER PRO HIS GLN ILE LEU ASP SEQRES 5 A 321 GLY GLU ASN CYS THR LEU ILE ASP ALA LEU LEU GLY ASP SEQRES 6 A 321 PRO GLN CYS ASP GLY PHE GLN ASN LYS LYS TRP ASP LEU SEQRES 7 A 321 PHE VAL GLU ARG SER LYS ALA TYR SER ASN CYS TYR PRO SEQRES 8 A 321 TYR ASP VAL PRO ASP TYR ALA SER LEU ARG SER LEU VAL SEQRES 9 A 321 ALA SER SER GLY THR LEU GLU PHE ASN ASN GLU SER PHE SEQRES 10 A 321 ASN TRP THR GLY VAL THR GLN ASN GLY THR SER SER ALA SEQRES 11 A 321 CYS ILE ARG ARG SER ASN ASN SER PHE PHE SER ARG LEU SEQRES 12 A 321 ASN TRP LEU THR HIS LEU LYS PHE LYS TYR PRO ALA LEU SEQRES 13 A 321 ASN VAL THR MET PRO ASN ASN GLU LYS PHE ASP LYS LEU SEQRES 14 A 321 TYR ILE TRP GLY VAL HIS HIS PRO VAL THR ASP ASN ASP SEQRES 15 A 321 GLN ILE PHE PRO TYR ALA GLN ALA SER GLY ARG ILE THR SEQRES 16 A 321 VAL SER THR LYS ARG SER GLN GLN THR VAL ILE PRO ASN SEQRES 17 A 321 ILE GLY SER ARG PRO ARG VAL ARG ASN ILE PRO SER ARG SEQRES 18 A 321 ILE SER ILE TYR TRP THR ILE VAL LYS PRO GLY ASP ILE SEQRES 19 A 321 LEU LEU ILE ASN SER THR GLY ASN LEU ILE ALA PRO ARG SEQRES 20 A 321 GLY TYR PHE LYS ILE ARG SER GLY LYS SER SER ILE MET SEQRES 21 A 321 ARG SER ASP ALA PRO ILE GLY LYS CYS ASN SER GLU CYS SEQRES 22 A 321 ILE THR PRO ASN GLY SER ILE PRO ASN ASP LYS PRO PHE SEQRES 23 A 321 GLN ASN VAL ASN ARG ILE THR TYR GLY ALA CYS PRO ARG SEQRES 24 A 321 TYR VAL LYS GLN ASN THR LEU LYS LEU ALA THR GLY MET SEQRES 25 A 321 ARG ASN VAL PRO GLU LYS GLN THR ARG SEQRES 1 B 176 GLY ILE PHE GLY ALA ILE ALA GLY PHE ILE GLU ASN GLY SEQRES 2 B 176 TRP GLU GLY MET VAL ASP GLY TRP TYR GLY PHE ARG HIS SEQRES 3 B 176 GLN ASN SER GLU GLY ILE GLY GLN ALA ALA ASP LEU LYS SEQRES 4 B 176 SER THR GLN ALA ALA ILE ASP GLN ILE ASN GLY LYS LEU SEQRES 5 B 176 ASN ARG LEU ILE GLY LYS THR ASN GLU LYS PHE HIS GLN SEQRES 6 B 176 ILE GLU LYS GLU PHE SER GLU VAL GLU GLY ARG ILE GLN SEQRES 7 B 176 ASP LEU GLU LYS TYR VAL GLU ASP THR LYS ILE ASP LEU SEQRES 8 B 176 TRP SER TYR ASN ALA GLU LEU LEU VAL ALA LEU GLU ASN SEQRES 9 B 176 GLN HIS THR ILE ASP LEU THR ASP SER GLU MET ASN LYS SEQRES 10 B 176 LEU PHE GLU LYS THR LYS LYS GLN LEU ARG GLU ASN ALA SEQRES 11 B 176 GLU ASP MET GLY ASN GLY CYS PHE LYS ILE TYR HIS LYS SEQRES 12 B 176 CYS ASP ASN ALA CYS ILE GLY SER ILE ARG ASN GLY THR SEQRES 13 B 176 TYR ASP HIS ASP VAL TYR ARG ASP GLU ALA LEU ASN ASN SEQRES 14 B 176 ARG PHE GLN ILE LYS GLY VAL HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG D 1 14 HET NAG D 2 14 HET FUL D 3 10 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG A 401 14 HET NAG A 414 14 HET SIA A 415 21 HET NAG B 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 3 NAG 11(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 4 FUL C6 H12 O5 FORMUL 9 SIA C11 H19 N O9 FORMUL 11 HOH *172(H2 O) HELIX 1 AA1 THR A 65 GLY A 72 1 8 HELIX 2 AA2 ASP A 73 GLN A 80 5 8 HELIX 3 AA3 ASP A 104 GLY A 116 1 13 HELIX 4 AA4 LEU B 38 ILE B 56 1 19 HELIX 5 AA5 GLY B 75 ARG B 127 1 53 HELIX 6 AA6 ASP B 145 ASN B 154 1 10 HELIX 7 AA7 ASP B 158 PHE B 171 1 14 SHEET 1 AA1 5 GLY B 31 ASP B 37 0 SHEET 2 AA1 5 TYR B 22 ASN B 28 -1 N TYR B 22 O ASP B 37 SHEET 3 AA1 5 ALA A 11 HIS A 17 -1 N CYS A 14 O ARG B 25 SHEET 4 AA1 5 CYS B 137 ILE B 140 -1 O ILE B 140 N ALA A 11 SHEET 5 AA1 5 ALA B 130 ASP B 132 -1 N GLU B 131 O LYS B 139 SHEET 1 AA2 2 THR A 24 VAL A 26 0 SHEET 2 AA2 2 ILE A 34 VAL A 36 -1 O VAL A 36 N THR A 24 SHEET 1 AA3 2 ALA A 39 GLU A 41 0 SHEET 2 AA3 2 LYS A 315 ALA A 317 -1 O LEU A 316 N THR A 40 SHEET 1 AA4 3 VAL A 43 GLN A 44 0 SHEET 2 AA4 3 PHE A 294 GLN A 295 1 O PHE A 294 N GLN A 44 SHEET 3 AA4 3 ARG A 307 TYR A 308 1 O ARG A 307 N GLN A 295 SHEET 1 AA5 2 ILE A 51 SER A 54 0 SHEET 2 AA5 2 ILE A 274 ASN A 278 1 O GLY A 275 N ASP A 53 SHEET 1 AA6 3 ILE A 58 ASP A 60 0 SHEET 2 AA6 3 LEU A 86 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 AA6 3 SER A 266 ARG A 269 1 O SER A 266 N PHE A 87 SHEET 1 AA7 5 TYR A 100 ASP A 101 0 SHEET 2 AA7 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AA7 5 LYS A 176 HIS A 184 -1 N TRP A 180 O TYR A 233 SHEET 4 AA7 5 GLY A 256 LYS A 259 -1 O PHE A 258 N LEU A 177 SHEET 5 AA7 5 PHE A 120 ASN A 122 -1 N ASN A 121 O TYR A 257 SHEET 1 AA8 5 TYR A 100 ASP A 101 0 SHEET 2 AA8 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AA8 5 LYS A 176 HIS A 184 -1 N TRP A 180 O TYR A 233 SHEET 4 AA8 5 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 AA8 5 LEU A 151 TRP A 153 -1 N ASN A 152 O ALA A 253 SHEET 1 AA9 2 SER A 136 ILE A 140 0 SHEET 2 AA9 2 ASN A 145 SER A 146 -1 O SER A 146 N SER A 136 SHEET 1 AB1 4 LEU A 164 PRO A 169 0 SHEET 2 AB1 4 ILE A 242 SER A 247 -1 O ILE A 245 N VAL A 166 SHEET 3 AB1 4 ILE A 202 SER A 205 -1 N SER A 205 O LEU A 244 SHEET 4 AB1 4 GLN A 210 VAL A 213 -1 O VAL A 213 N ILE A 202 SHEET 1 AB2 4 GLY A 286 ILE A 288 0 SHEET 2 AB2 4 CYS A 281 THR A 283 -1 N CYS A 281 O ILE A 288 SHEET 3 AB2 4 TYR A 302 CYS A 305 -1 O TYR A 302 N ILE A 282 SHEET 4 AB2 4 ASN B 60 LYS B 62 -1 O LYS B 62 N GLY A 303 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.08 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.10 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.08 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.06 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.07 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.12 LINK ND2 ASN A 22 C1 NAG A 401 1555 1555 1.46 LINK ND2 ASN A 38 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 63 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 133 C1 NAG A 414 1555 1555 1.44 LINK ND2 ASN A 165 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN A 285 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN B 154 C1 NAG B 201 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O6 NAG D 1 C1 FUL D 3 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 CISPEP 1 SER A 54 PRO A 55 0 1.60 CRYST1 100.264 100.264 383.644 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009974 0.005758 0.000000 0.00000 SCALE2 0.000000 0.011517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002607 0.00000