HEADER TRANSCRIPTION/DNA 25-JAN-19 6NSR TITLE TETR FAMILY TRANSCRIPTIONAL REGULATOR CIFR C99T-C181R CYSTEINE MUTANT TITLE 2 COMPLEXED WITH 26BP DOUBLE-STRAND OPERATOR DNA AND APO-CIFR C99T- TITLE 3 C181R COMPND MOL_ID: 1; COMPND 2 MOLECULE: CIFR; COMPND 3 CHAIN: A, B, E; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (26-MER); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (26-MER); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: CIFR, PA2931; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 10 ORGANISM_TAXID: 287; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 14 ORGANISM_TAXID: 287 KEYWDS REPRESSOR, PROTEIN-DNA COMPLEX, EPOXIDE SENSING, TRANSCRIPTION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HE,N.M.TAHER,A.R.SIMARD,D.R.MADDEN REVDAT 5 23-OCT-24 6NSR 1 JRNL REVDAT 4 17-JUL-24 6NSR 1 COMPND SOURCE AUTHOR JRNL REVDAT 4 2 1 REMARK DBREF SEQADV SEQRES REVDAT 4 3 1 HELIX LINK ATOM REVDAT 3 14-FEB-24 6NSR 1 COMPND SOURCE REVDAT 2 31-JAN-24 6NSR 1 COMPND SOURCE JRNL REMARK REVDAT 2 2 1 DBREF SEQADV REVDAT 1 29-JAN-20 6NSR 0 JRNL AUTH S.HE,N.M.TAHER,A.R.SIMARD,K.L.HVORECNY,M.J.RAGUSA,C.D.BAHL, JRNL AUTH 2 A.B.HICKMAN,F.DYDA,D.R.MADDEN JRNL TITL MOLECULAR BASIS FOR THE TRANSCRIPTIONAL REGULATION OF AN JRNL TITL 2 EPOXIDE-BASED VIRULENCE CIRCUIT IN PSEUDOMONAS AERUGINOSA. JRNL REF NUCLEIC ACIDS RES. 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 39413156 JRNL DOI 10.1093/NAR/GKAE889 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.HE,N.M.TAHER,A.R.SIMARD,K.L.HVORECNY,M.J.RAGUSA,C.D.BAHL, REMARK 1 AUTH 2 A.B.HICKMAN,F.DYDA,D.R.MADDEN REMARK 1 TITL MOLECULAR BASIS FOR THE TRANSCRIPTIONAL REGULATION OF AN REMARK 1 TITL 2 EPOXIDE-BASED VIRULENCE CIRCUIT IN PSEUDOMONAS AERUGINOSA REMARK 1 REF BIORXIV 2024 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2024.01.16.572601 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9800 - 6.9700 1.00 1325 148 0.1816 0.2174 REMARK 3 2 6.9600 - 5.5700 1.00 1274 142 0.2429 0.2434 REMARK 3 3 5.5600 - 4.8700 1.00 1238 137 0.2255 0.2250 REMARK 3 4 4.8700 - 4.4300 1.00 1242 138 0.1991 0.2132 REMARK 3 5 4.4300 - 4.1200 1.00 1236 137 0.1909 0.2205 REMARK 3 6 4.1200 - 3.8800 1.00 1220 136 0.2054 0.2253 REMARK 3 7 3.8800 - 3.6800 1.00 1209 134 0.2154 0.2653 REMARK 3 8 3.6800 - 3.5200 1.00 1226 136 0.2489 0.2824 REMARK 3 9 3.5200 - 3.3900 1.00 1219 137 0.2578 0.3146 REMARK 3 10 3.3900 - 3.2700 0.99 1209 135 0.2634 0.2974 REMARK 3 11 3.2700 - 3.1700 0.99 1182 129 0.2565 0.3012 REMARK 3 12 3.1700 - 3.0800 1.00 1211 135 0.2908 0.3611 REMARK 3 13 3.0800 - 3.0000 1.00 1211 135 0.3713 0.3905 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.412 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.092 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 91.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 102.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5545 REMARK 3 ANGLE : 0.602 7708 REMARK 3 CHIRALITY : 0.043 845 REMARK 3 PLANARITY : 0.004 837 REMARK 3 DIHEDRAL : 18.780 2153 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 42.2910 52.1450 65.9175 REMARK 3 T TENSOR REMARK 3 T11: 0.4440 T22: 0.4254 REMARK 3 T33: 0.4795 T12: -0.0746 REMARK 3 T13: 0.0113 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 5.1613 L22: 2.1718 REMARK 3 L33: 5.1472 L12: -1.8719 REMARK 3 L13: 4.1517 L23: -1.3096 REMARK 3 S TENSOR REMARK 3 S11: -0.3480 S12: 0.2497 S13: 0.4305 REMARK 3 S21: -0.1364 S22: 0.0638 S23: -0.0810 REMARK 3 S31: -0.5155 S32: 0.2965 S33: 0.2652 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 40.7213 28.4502 67.2339 REMARK 3 T TENSOR REMARK 3 T11: 0.5352 T22: 0.4246 REMARK 3 T33: 0.5860 T12: 0.0394 REMARK 3 T13: -0.0025 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 4.9064 L22: 2.2438 REMARK 3 L33: 5.0892 L12: 1.3090 REMARK 3 L13: 3.5776 L23: 0.6300 REMARK 3 S TENSOR REMARK 3 S11: 0.2404 S12: 0.2377 S13: -0.5383 REMARK 3 S21: -0.2798 S22: 0.1128 S23: 0.1105 REMARK 3 S31: 0.7253 S32: 0.0981 S33: -0.3180 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 16.8331 40.9171 43.5548 REMARK 3 T TENSOR REMARK 3 T11: 1.3058 T22: 0.9443 REMARK 3 T33: 1.1615 T12: -0.0440 REMARK 3 T13: -0.6224 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.2699 L22: 5.0382 REMARK 3 L33: 1.4823 L12: -0.2919 REMARK 3 L13: -0.6794 L23: 1.8325 REMARK 3 S TENSOR REMARK 3 S11: 0.3850 S12: 0.4048 S13: -0.0605 REMARK 3 S21: -2.0626 S22: -0.5692 S23: 1.7440 REMARK 3 S31: 0.0952 S32: -0.3519 S33: 0.1947 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 15.8187 40.6860 44.5274 REMARK 3 T TENSOR REMARK 3 T11: 1.0303 T22: 0.8738 REMARK 3 T33: 1.2800 T12: 0.0397 REMARK 3 T13: -0.4942 T23: -0.0621 REMARK 3 L TENSOR REMARK 3 L11: 1.1705 L22: 4.8890 REMARK 3 L33: 3.1810 L12: -0.1562 REMARK 3 L13: 0.0339 L23: 1.0895 REMARK 3 S TENSOR REMARK 3 S11: 0.3996 S12: 0.4159 S13: -0.1158 REMARK 3 S21: -1.3773 S22: -0.4807 S23: 1.8449 REMARK 3 S31: 0.3049 S32: -0.5232 S33: 0.1118 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 20.9703 9.0869 87.0915 REMARK 3 T TENSOR REMARK 3 T11: 1.7884 T22: 0.9163 REMARK 3 T33: 1.0159 T12: 0.1886 REMARK 3 T13: 0.1290 T23: 0.0930 REMARK 3 L TENSOR REMARK 3 L11: 1.7442 L22: 2.9087 REMARK 3 L33: 2.8711 L12: 0.4892 REMARK 3 L13: 0.0074 L23: -1.8642 REMARK 3 S TENSOR REMARK 3 S11: -0.3168 S12: -0.1559 S13: 0.1499 REMARK 3 S21: 0.8921 S22: 0.4410 S23: 0.4867 REMARK 3 S31: 0.2410 S32: -0.6084 S33: -0.0732 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NSR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17781 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 7.5, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 11% PEG1000, 11% PEG8000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.75850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 82.78450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.75850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 82.78450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 63.51700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 ARG A 4 REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 5 REMARK 465 GLY E -1 REMARK 465 PRO E 0 REMARK 465 MSE E 1 REMARK 465 ALA E 2 REMARK 465 THR E 3 REMARK 465 ARG E 4 REMARK 465 GLY E 5 REMARK 465 ARG E 6 REMARK 465 PRO E 7 REMARK 465 ARG E 8 REMARK 465 ALA E 9 REMARK 465 ALA E 96 REMARK 465 ARG E 97 REMARK 465 PHE E 98 REMARK 465 THR E 99 REMARK 465 SER E 100 REMARK 465 ASP E 101 REMARK 465 GLU E 102 REMARK 465 PHE E 103 REMARK 465 PRO E 104 REMARK 465 ARG E 105 REMARK 465 GLY E 106 REMARK 465 CYS E 107 REMARK 465 LEU E 108 REMARK 465 VAL E 109 REMARK 465 VAL E 110 REMARK 465 LEU E 111 REMARK 465 ALA E 112 REMARK 465 ALA E 113 REMARK 465 LEU E 114 REMARK 465 THR E 115 REMARK 465 GLY E 116 REMARK 465 THR E 117 REMARK 465 PRO E 118 REMARK 465 TRP E 195 REMARK 465 PRO E 196 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 43 CZ NH1 NH2 REMARK 480 ARG A 71 CZ NH1 NH2 REMARK 480 GLU A 85 CG CD OE1 OE2 REMARK 480 GLU A 102 CG CD OE1 OE2 REMARK 480 GLU A 119 CG CD OE1 OE2 REMARK 480 GLU A 182 CG CD OE1 OE2 REMARK 480 ARG B 18 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 43 NE CZ NH1 NH2 REMARK 480 ARG B 71 CG CD NE CZ NH1 NH2 REMARK 480 GLU B 85 CG CD OE1 OE2 REMARK 480 GLU B 89 CG CD OE1 OE2 REMARK 480 GLU B 182 CD OE1 OE2 REMARK 480 ASP E 11 CG OD1 OD2 REMARK 480 ARG E 12 CG CD NE CZ NH1 NH2 REMARK 480 GLN E 17 CG CD OE1 NE2 REMARK 480 ARG E 18 CD NE CZ NH1 NH2 REMARK 480 VAL E 22 CG1 CG2 REMARK 480 TRP E 24 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 480 TRP E 24 CZ3 CH2 REMARK 480 ARG E 26 NE CZ NH1 NH2 REMARK 480 GLU E 29 CG CD OE1 OE2 REMARK 480 LEU E 36 CG CD1 CD2 REMARK 480 THR E 37 OG1 CG2 REMARK 480 GLU E 41 CG CD OE1 OE2 REMARK 480 ILE E 42 CG1 CG2 CD1 REMARK 480 ARG E 43 CG CD NE CZ NH1 NH2 REMARK 480 SER E 46 OG REMARK 480 LYS E 54 CD CE NZ REMARK 480 GLU E 60 CG CD OE1 OE2 REMARK 480 LEU E 62 CG CD1 CD2 REMARK 480 GLN E 68 CG CD OE1 NE2 REMARK 480 TYR E 72 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ASP E 75 CG OD1 OD2 REMARK 480 VAL E 76 CG1 CG2 REMARK 480 ASP E 78 CG OD1 OD2 REMARK 480 GLU E 85 CG CD OE1 OE2 REMARK 480 GLU E 89 CG CD OE1 OE2 REMARK 480 LEU E 90 CG CD1 CD2 REMARK 480 ARG E 92 CG CD NE CZ NH1 NH2 REMARK 480 GLU E 119 CD OE1 OE2 REMARK 480 SER E 120 OG REMARK 480 GLU E 121 CD OE1 OE2 REMARK 480 GLU E 130 CD OE1 OE2 REMARK 480 GLU E 133 CG CD OE1 OE2 REMARK 480 ILE E 135 CD1 REMARK 480 ARG E 136 CG CD NE CZ NH1 NH2 REMARK 480 LEU E 137 CG CD1 CD2 REMARK 480 ARG E 139 CD NE CZ NH1 NH2 REMARK 480 GLU E 140 CG CD OE1 OE2 REMARK 480 ARG E 141 CG CD NE CZ NH1 NH2 REMARK 480 ASP E 148 CG OD1 OD2 REMARK 480 LEU E 151 CG CD1 CD2 REMARK 480 ASP E 154 CG OD1 OD2 REMARK 480 MSE E 157 CG SE CE REMARK 480 GLU E 158 CG CD OE1 OE2 REMARK 480 GLU E 159 CD OE1 OE2 REMARK 480 LEU E 160 CG CD1 CD2 REMARK 480 VAL E 167 CG1 CG2 REMARK 480 LEU E 168 CD1 CD2 REMARK 480 LEU E 171 CG CD1 CD2 REMARK 480 SER E 172 OG REMARK 480 LYS E 176 CG CD CE NZ REMARK 480 ARG E 178 CG CD NE CZ NH1 NH2 REMARK 480 ARG E 181 CG CD NE CZ NH1 NH2 REMARK 480 GLU E 182 CG CD OE1 OE2 REMARK 480 ARG E 183 CD NE CZ NH1 NH2 REMARK 480 LEU E 184 CG CD1 CD2 REMARK 480 LEU E 185 CD1 CD2 REMARK 480 GLU E 189 CD OE1 OE2 REMARK 480 LEU E 192 CG CD1 CD2 REMARK 480 ARG E 193 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 53 170.99 171.36 REMARK 500 ALA E 50 -68.77 -108.85 REMARK 500 SER E 53 153.15 176.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NSN RELATED DB: PDB REMARK 900 NATIVE DATASET REMARK 900 RELATED ID: 6NSM RELATED DB: PDB REMARK 900 C107S MUTANT DATASET DBREF 6NSR A 1 196 UNP Q9HZR6 Q9HZR6_PSEAE 1 196 DBREF 6NSR B 1 196 UNP Q9HZR6 Q9HZR6_PSEAE 1 196 DBREF 6NSR C 1 26 PDB 6NSR 6NSR 1 26 DBREF 6NSR D 1 26 PDB 6NSR 6NSR 1 26 DBREF 6NSR E 1 196 UNP Q9HZR6 Q9HZR6_PSEAE 1 196 SEQADV 6NSR GLY A -1 UNP Q9HZR6 EXPRESSION TAG SEQADV 6NSR PRO A 0 UNP Q9HZR6 EXPRESSION TAG SEQADV 6NSR THR A 99 UNP Q9HZR6 CYS 99 ENGINEERED MUTATION SEQADV 6NSR MSE A 157 UNP Q9HZR6 VAL 157 CONFLICT SEQADV 6NSR ARG A 181 UNP Q9HZR6 CYS 181 ENGINEERED MUTATION SEQADV 6NSR GLY B -1 UNP Q9HZR6 EXPRESSION TAG SEQADV 6NSR PRO B 0 UNP Q9HZR6 EXPRESSION TAG SEQADV 6NSR THR B 99 UNP Q9HZR6 CYS 99 ENGINEERED MUTATION SEQADV 6NSR MSE B 157 UNP Q9HZR6 VAL 157 CONFLICT SEQADV 6NSR ARG B 181 UNP Q9HZR6 CYS 181 ENGINEERED MUTATION SEQADV 6NSR GLY E -1 UNP Q9HZR6 EXPRESSION TAG SEQADV 6NSR PRO E 0 UNP Q9HZR6 EXPRESSION TAG SEQADV 6NSR THR E 99 UNP Q9HZR6 CYS 99 ENGINEERED MUTATION SEQADV 6NSR MSE E 157 UNP Q9HZR6 VAL 157 CONFLICT SEQADV 6NSR ARG E 181 UNP Q9HZR6 CYS 181 ENGINEERED MUTATION SEQRES 1 A 198 GLY PRO MSE ALA THR ARG GLY ARG PRO ARG ALA PHE ASP SEQRES 2 A 198 ARG ASP THR ALA LEU GLN ARG ALA MSE ASP VAL PHE TRP SEQRES 3 A 198 VAL ARG GLY TYR GLU GLY ALA SER LEU ALA ALA LEU THR SEQRES 4 A 198 GLU ALA MSE GLU ILE ARG PRO PRO SER LEU TYR ALA ALA SEQRES 5 A 198 PHE GLY SER LYS GLU GLY LEU PHE ARG GLU ALA LEU ALA SEQRES 6 A 198 HIS TYR LEU GLY GLN HIS GLY ARG TYR ARG ARG ASP VAL SEQRES 7 A 198 LEU ASP GLY ALA PRO SER ALA ARG GLU GLY VAL ALA GLU SEQRES 8 A 198 LEU LEU ARG GLU THR VAL ALA ARG PHE THR SER ASP GLU SEQRES 9 A 198 PHE PRO ARG GLY CYS LEU VAL VAL LEU ALA ALA LEU THR SEQRES 10 A 198 GLY THR PRO GLU SER GLU ALA VAL ARG ASP ALA LEU SER SEQRES 11 A 198 ALA GLU ARG GLY GLU SER ILE ARG LEU PHE ARG GLU ARG SEQRES 12 A 198 MSE ARG ARG GLY ILE ALA ASP GLY ASP LEU ALA ALA ASP SEQRES 13 A 198 THR ASP MSE GLU GLU LEU ALA THR PHE TYR ALA THR VAL SEQRES 14 A 198 LEU PHE GLY LEU SER VAL GLN ALA LYS ASP ARG VAL PRO SEQRES 15 A 198 ARG GLU ARG LEU LEU ALA VAL VAL GLU ARG ALA LEU ARG SEQRES 16 A 198 ALA TRP PRO SEQRES 1 B 198 GLY PRO MSE ALA THR ARG GLY ARG PRO ARG ALA PHE ASP SEQRES 2 B 198 ARG ASP THR ALA LEU GLN ARG ALA MSE ASP VAL PHE TRP SEQRES 3 B 198 VAL ARG GLY TYR GLU GLY ALA SER LEU ALA ALA LEU THR SEQRES 4 B 198 GLU ALA MSE GLU ILE ARG PRO PRO SER LEU TYR ALA ALA SEQRES 5 B 198 PHE GLY SER LYS GLU GLY LEU PHE ARG GLU ALA LEU ALA SEQRES 6 B 198 HIS TYR LEU GLY GLN HIS GLY ARG TYR ARG ARG ASP VAL SEQRES 7 B 198 LEU ASP GLY ALA PRO SER ALA ARG GLU GLY VAL ALA GLU SEQRES 8 B 198 LEU LEU ARG GLU THR VAL ALA ARG PHE THR SER ASP GLU SEQRES 9 B 198 PHE PRO ARG GLY CYS LEU VAL VAL LEU ALA ALA LEU THR SEQRES 10 B 198 GLY THR PRO GLU SER GLU ALA VAL ARG ASP ALA LEU SER SEQRES 11 B 198 ALA GLU ARG GLY GLU SER ILE ARG LEU PHE ARG GLU ARG SEQRES 12 B 198 MSE ARG ARG GLY ILE ALA ASP GLY ASP LEU ALA ALA ASP SEQRES 13 B 198 THR ASP MSE GLU GLU LEU ALA THR PHE TYR ALA THR VAL SEQRES 14 B 198 LEU PHE GLY LEU SER VAL GLN ALA LYS ASP ARG VAL PRO SEQRES 15 B 198 ARG GLU ARG LEU LEU ALA VAL VAL GLU ARG ALA LEU ARG SEQRES 16 B 198 ALA TRP PRO SEQRES 1 C 26 DT DT DA DT DT DT DG DT DA DT DC DG DA SEQRES 2 C 26 DT DC DA DC DT DA DT DA DA DA DT DT DT SEQRES 1 D 26 DA DA DA DT DT DT DA DT DA DG DT DG DA SEQRES 2 D 26 DT DC DG DA DT DA DC DA DA DA DT DA DA SEQRES 1 E 198 GLY PRO MSE ALA THR ARG GLY ARG PRO ARG ALA PHE ASP SEQRES 2 E 198 ARG ASP THR ALA LEU GLN ARG ALA MSE ASP VAL PHE TRP SEQRES 3 E 198 VAL ARG GLY TYR GLU GLY ALA SER LEU ALA ALA LEU THR SEQRES 4 E 198 GLU ALA MSE GLU ILE ARG PRO PRO SER LEU TYR ALA ALA SEQRES 5 E 198 PHE GLY SER LYS GLU GLY LEU PHE ARG GLU ALA LEU ALA SEQRES 6 E 198 HIS TYR LEU GLY GLN HIS GLY ARG TYR ARG ARG ASP VAL SEQRES 7 E 198 LEU ASP GLY ALA PRO SER ALA ARG GLU GLY VAL ALA GLU SEQRES 8 E 198 LEU LEU ARG GLU THR VAL ALA ARG PHE THR SER ASP GLU SEQRES 9 E 198 PHE PRO ARG GLY CYS LEU VAL VAL LEU ALA ALA LEU THR SEQRES 10 E 198 GLY THR PRO GLU SER GLU ALA VAL ARG ASP ALA LEU SER SEQRES 11 E 198 ALA GLU ARG GLY GLU SER ILE ARG LEU PHE ARG GLU ARG SEQRES 12 E 198 MSE ARG ARG GLY ILE ALA ASP GLY ASP LEU ALA ALA ASP SEQRES 13 E 198 THR ASP MSE GLU GLU LEU ALA THR PHE TYR ALA THR VAL SEQRES 14 E 198 LEU PHE GLY LEU SER VAL GLN ALA LYS ASP ARG VAL PRO SEQRES 15 E 198 ARG GLU ARG LEU LEU ALA VAL VAL GLU ARG ALA LEU ARG SEQRES 16 E 198 ALA TRP PRO MODRES 6NSR MSE A 20 MET MODIFIED RESIDUE MODRES 6NSR MSE A 40 MET MODIFIED RESIDUE MODRES 6NSR MSE A 142 MET MODIFIED RESIDUE MODRES 6NSR MSE B 20 MET MODIFIED RESIDUE MODRES 6NSR MSE B 40 MET MODIFIED RESIDUE MODRES 6NSR MSE B 142 MET MODIFIED RESIDUE MODRES 6NSR MSE E 20 MET MODIFIED RESIDUE MODRES 6NSR MSE E 40 MET MODIFIED RESIDUE MODRES 6NSR MSE E 142 MET MODIFIED RESIDUE HET MSE A 20 8 HET MSE A 40 8 HET MSE A 142 8 HET MSE A 157 8 HET MSE B 20 8 HET MSE B 40 8 HET MSE B 142 8 HET MSE B 157 8 HET MSE E 20 8 HET MSE E 40 8 HET MSE E 142 8 HET MSE E 157 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) HELIX 1 AA1 ASP A 11 ALA A 31 1 21 HELIX 2 AA2 SER A 32 GLU A 41 1 10 HELIX 3 AA3 ARG A 43 PHE A 51 1 9 HELIX 4 AA4 SER A 53 HIS A 69 1 17 HELIX 5 AA5 GLY A 70 GLY A 79 1 10 HELIX 6 AA6 SER A 82 THR A 99 1 18 HELIX 7 AA7 CYS A 107 ALA A 112 1 6 HELIX 8 AA8 THR A 117 GLU A 119 5 3 HELIX 9 AA9 SER A 120 GLY A 149 1 30 HELIX 10 AB1 ASP A 156 ASP A 177 1 22 HELIX 11 AB2 PRO A 180 ARG A 193 1 14 HELIX 12 AB3 ASP B 11 GLY B 27 1 17 HELIX 13 AB4 SER B 32 GLU B 41 1 10 HELIX 14 AB5 ARG B 43 PHE B 51 1 9 HELIX 15 AB6 SER B 53 GLY B 70 1 18 HELIX 16 AB7 GLY B 70 GLY B 79 1 10 HELIX 17 AB8 SER B 82 THR B 99 1 18 HELIX 18 AB9 CYS B 107 ALA B 112 1 6 HELIX 19 AC1 THR B 117 GLU B 119 5 3 HELIX 20 AC2 SER B 120 GLY B 149 1 30 HELIX 21 AC3 ASP B 156 ASP B 177 1 22 HELIX 22 AC4 PRO B 180 ARG B 193 1 14 HELIX 23 AC5 ASP E 11 GLY E 27 1 17 HELIX 24 AC6 SER E 32 MSE E 40 1 9 HELIX 25 AC7 ARG E 43 GLY E 52 1 10 HELIX 26 AC8 SER E 53 HIS E 69 1 17 HELIX 27 AC9 HIS E 69 GLY E 79 1 11 HELIX 28 AD1 ALA E 83 THR E 94 1 12 HELIX 29 AD2 SER E 120 ASP E 148 1 29 HELIX 30 AD3 ASP E 156 GLN E 174 1 19 HELIX 31 AD4 PRO E 180 LEU E 192 1 13 LINK C ALA A 19 N MSE A 20 1555 1555 1.33 LINK C MSE A 20 N ASP A 21 1555 1555 1.33 LINK C ALA A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N GLU A 41 1555 1555 1.33 LINK C ARG A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N ARG A 143 1555 1555 1.34 LINK C ASP A 156 N MSE A 157 1555 1555 1.33 LINK C MSE A 157 N GLU A 158 1555 1555 1.34 LINK C ALA B 19 N MSE B 20 1555 1555 1.33 LINK C MSE B 20 N ASP B 21 1555 1555 1.34 LINK C ALA B 39 N MSE B 40 1555 1555 1.33 LINK C MSE B 40 N GLU B 41 1555 1555 1.33 LINK C ARG B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N ARG B 143 1555 1555 1.34 LINK C ASP B 156 N MSE B 157 1555 1555 1.33 LINK C MSE B 157 N GLU B 158 1555 1555 1.34 LINK C ALA E 19 N MSE E 20 1555 1555 1.33 LINK C MSE E 20 N ASP E 21 1555 1555 1.34 LINK C ALA E 39 N MSE E 40 1555 1555 1.33 LINK C MSE E 40 N GLU E 41 1555 1555 1.34 LINK C ARG E 141 N MSE E 142 1555 1555 1.33 LINK C MSE E 142 N ARG E 143 1555 1555 1.33 LINK C ASP E 156 N MSE E 157 1555 1555 1.33 LINK C MSE E 157 N GLU E 158 1555 1555 1.33 CRYST1 63.517 165.569 81.529 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015744 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012266 0.00000