HEADER TRANSFERASE/PROTEIN BINDING 28-JAN-19 6NTC TITLE CRYSTAL STRUCTURE OF G12V HRAS-GPPNHP BOUND IN COMPLEX WITH THE TITLE 2 ENGINEERED RBD VARIANT 1 OF CRAF KINASE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: PROTO-ONCOGENE C-RAF,CRAF,RAF-1; COMPND 11 EC: 2.7.11.1; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RAF1, RAF; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AFFINITY REAGENT, RAS INHIBITOR, TRANSFERASE-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.MAISONNEUVE,I.KURINOV,S.WIECHMANN,A.ERNST,F.SICHERI REVDAT 3 11-OCT-23 6NTC 1 REMARK REVDAT 2 15-APR-20 6NTC 1 JRNL REVDAT 1 04-MAR-20 6NTC 0 JRNL AUTH S.WIECHMANN,P.MAISONNEUVE,B.M.GREBBIN,M.HOFFMEISTER, JRNL AUTH 2 M.KAULICH,H.CLEVERS,K.RAJALINGAM,I.KURINOV,H.F.FARIN, JRNL AUTH 3 F.SICHERI,A.ERNST JRNL TITL CONFORMATION-SPECIFIC INHIBITORS OF ACTIVATED RAS GTPASES JRNL TITL 2 REVEAL LIMITED RAS DEPENDENCY OF PATIENT-DERIVED CANCER JRNL TITL 3 ORGANOIDS. JRNL REF J.BIOL.CHEM. V. 295 4526 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32086379 JRNL DOI 10.1074/JBC.RA119.011025 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 8490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.290 REMARK 3 FREE R VALUE TEST SET COUNT : 449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.0800 - 2.9002 0.87 2342 138 0.3942 0.5067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.580 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 145.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0374 -3.7549 -17.0784 REMARK 3 T TENSOR REMARK 3 T11: 0.7220 T22: 0.9836 REMARK 3 T33: 0.9889 T12: 0.1902 REMARK 3 T13: -0.1253 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 2.5751 L22: 5.7572 REMARK 3 L33: 6.5684 L12: -1.3359 REMARK 3 L13: -0.2750 L23: -0.5140 REMARK 3 S TENSOR REMARK 3 S11: 0.4957 S12: 1.2493 S13: -0.4926 REMARK 3 S21: -0.9446 S22: -0.0173 S23: -1.0422 REMARK 3 S31: 0.1184 S32: -0.5549 S33: 0.2190 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7703 -1.9536 -16.8150 REMARK 3 T TENSOR REMARK 3 T11: 0.8148 T22: 0.8937 REMARK 3 T33: 0.9578 T12: 0.2417 REMARK 3 T13: -0.0016 T23: 0.1234 REMARK 3 L TENSOR REMARK 3 L11: 8.1998 L22: 9.1159 REMARK 3 L33: 9.3024 L12: 2.5207 REMARK 3 L13: -1.4891 L23: -2.9072 REMARK 3 S TENSOR REMARK 3 S11: -0.2432 S12: 0.6502 S13: -0.3173 REMARK 3 S21: -1.4660 S22: -0.0840 S23: -0.2744 REMARK 3 S31: -0.1228 S32: 0.2796 S33: 0.2282 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.5051 -13.1778 -14.8529 REMARK 3 T TENSOR REMARK 3 T11: 1.0067 T22: 1.0862 REMARK 3 T33: 1.8220 T12: 0.0150 REMARK 3 T13: 0.1933 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 3.5993 L22: 2.7723 REMARK 3 L33: 5.1681 L12: -2.6146 REMARK 3 L13: -3.3058 L23: 2.5662 REMARK 3 S TENSOR REMARK 3 S11: 0.4108 S12: 1.3752 S13: -0.7492 REMARK 3 S21: -0.6709 S22: 0.4418 S23: -1.5700 REMARK 3 S31: -0.0622 S32: 1.0389 S33: -0.9986 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2318 -6.8352 -5.6474 REMARK 3 T TENSOR REMARK 3 T11: 0.7541 T22: 0.7176 REMARK 3 T33: 1.2885 T12: 0.0716 REMARK 3 T13: -0.1111 T23: 0.0774 REMARK 3 L TENSOR REMARK 3 L11: 2.5139 L22: 9.7900 REMARK 3 L33: 7.0395 L12: -3.0861 REMARK 3 L13: 0.3434 L23: 1.7230 REMARK 3 S TENSOR REMARK 3 S11: 0.5215 S12: 0.0669 S13: -0.4977 REMARK 3 S21: 0.5773 S22: 0.1384 S23: -0.1386 REMARK 3 S31: 0.1390 S32: 0.1097 S33: -0.4041 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5188 0.9812 -30.3902 REMARK 3 T TENSOR REMARK 3 T11: 0.9229 T22: 1.4830 REMARK 3 T33: 1.1125 T12: 0.4630 REMARK 3 T13: -0.2709 T23: 0.1802 REMARK 3 L TENSOR REMARK 3 L11: 5.3075 L22: 8.1120 REMARK 3 L33: 9.3137 L12: 2.7163 REMARK 3 L13: -1.3060 L23: 1.1965 REMARK 3 S TENSOR REMARK 3 S11: -0.1983 S12: -0.6492 S13: -0.0349 REMARK 3 S21: 0.4850 S22: -0.9946 S23: 0.3649 REMARK 3 S31: 0.4054 S32: -0.7344 S33: -0.3539 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5522 -5.2402 -31.9730 REMARK 3 T TENSOR REMARK 3 T11: 1.7477 T22: 1.7822 REMARK 3 T33: 0.5294 T12: 0.0017 REMARK 3 T13: -0.0995 T23: 0.2893 REMARK 3 L TENSOR REMARK 3 L11: 6.3289 L22: 5.7989 REMARK 3 L33: 3.2931 L12: 1.6312 REMARK 3 L13: -4.5374 L23: -1.6561 REMARK 3 S TENSOR REMARK 3 S11: 1.0505 S12: -1.0093 S13: -1.1184 REMARK 3 S21: 1.0902 S22: 0.3362 S23: -0.8774 REMARK 3 S31: 1.7785 S32: -1.5568 S33: 0.3869 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3529 1.8711 -29.5180 REMARK 3 T TENSOR REMARK 3 T11: 1.9882 T22: 2.6980 REMARK 3 T33: 2.9719 T12: 0.9961 REMARK 3 T13: -0.3751 T23: 0.4850 REMARK 3 L TENSOR REMARK 3 L11: 2.9690 L22: 4.8254 REMARK 3 L33: 3.6320 L12: 0.4770 REMARK 3 L13: 3.0860 L23: -0.9238 REMARK 3 S TENSOR REMARK 3 S11: 0.7900 S12: 0.7555 S13: 1.4213 REMARK 3 S21: -0.7844 S22: 0.4456 S23: 3.2375 REMARK 3 S31: -0.9802 S32: -3.2040 S33: -0.2482 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2362 6.4322 -35.9136 REMARK 3 T TENSOR REMARK 3 T11: 2.5788 T22: 3.2691 REMARK 3 T33: 1.3718 T12: 1.5121 REMARK 3 T13: -0.4277 T23: -0.1315 REMARK 3 L TENSOR REMARK 3 L11: 0.1127 L22: 0.4373 REMARK 3 L33: 5.4753 L12: -0.0193 REMARK 3 L13: -0.7838 L23: 0.2002 REMARK 3 S TENSOR REMARK 3 S11: -0.2381 S12: -0.9648 S13: 0.0326 REMARK 3 S21: 0.0339 S22: 0.1337 S23: 0.5707 REMARK 3 S31: -0.4194 S32: -1.8078 S33: -0.4984 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0362 6.7844 -42.8976 REMARK 3 T TENSOR REMARK 3 T11: 3.9387 T22: 2.9890 REMARK 3 T33: 1.2904 T12: 0.4848 REMARK 3 T13: -0.5520 T23: 0.0885 REMARK 3 L TENSOR REMARK 3 L11: 4.4232 L22: 1.9989 REMARK 3 L33: 2.0000 L12: -1.1883 REMARK 3 L13: -4.9570 L23: 8.3207 REMARK 3 S TENSOR REMARK 3 S11: 0.3635 S12: 2.6211 S13: 0.2772 REMARK 3 S21: -2.7151 S22: -1.7655 S23: 1.3108 REMARK 3 S31: 1.5939 S32: -2.5497 S33: 0.9144 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7868 -0.2066 -40.3969 REMARK 3 T TENSOR REMARK 3 T11: 1.4688 T22: 1.5617 REMARK 3 T33: 1.0260 T12: 0.3146 REMARK 3 T13: 0.0845 T23: -0.4994 REMARK 3 L TENSOR REMARK 3 L11: 1.9983 L22: 7.4025 REMARK 3 L33: 6.6405 L12: -3.2242 REMARK 3 L13: -5.4283 L23: 6.6411 REMARK 3 S TENSOR REMARK 3 S11: -0.1406 S12: 4.7695 S13: -0.3598 REMARK 3 S21: 0.4839 S22: 0.3776 S23: 0.6015 REMARK 3 S31: -0.0612 S32: -0.1975 S33: 1.6382 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8883 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 151.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18.00 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 18.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G0N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 200MM NH4SO4, 100MM NA REMARK 280 CACO PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.70600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.70600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.70600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 75.70600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.70600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 75.70600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 305 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 MET A -2 REMARK 465 GLY B 51 REMARK 465 ALA B 52 REMARK 465 MET B 53 REMARK 465 ASP B 54 REMARK 465 SER B 55 REMARK 465 ARG B 73 REMARK 465 ASN B 74 REMARK 465 GLY B 75 REMARK 465 ARG B 100 REMARK 465 LEU B 101 REMARK 465 LEU B 102 REMARK 465 HIS B 103 REMARK 465 GLU B 104 REMARK 465 HIS B 105 REMARK 465 LYS B 106 REMARK 465 GLY B 107 REMARK 465 LYS B 108 REMARK 465 LEU B 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A -1 CG OD1 OD2 REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 ILE A 21 CG1 CG2 CD1 REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 ILE A 36 CG1 CG2 CD1 REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 470 LEU A 52 CG CD1 CD2 REMARK 470 ASP A 54 CG OD1 OD2 REMARK 470 GLN A 61 CG CD OE1 NE2 REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 TYR A 64 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 65 OG REMARK 470 MET A 67 CG SD CE REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 69 CG OD1 OD2 REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 TYR A 71 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 99 CG CD OE1 NE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 ASP A 107 CG OD1 OD2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 THR B 57 OG1 CG2 REMARK 470 ILE B 58 CG1 CG2 CD1 REMARK 470 ARG B 59 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 60 CG1 CG2 REMARK 470 LEU B 61 CG CD1 CD2 REMARK 470 LEU B 62 CG CD1 CD2 REMARK 470 GLN B 65 CG CD OE1 NE2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 MET B 76 CG SD CE REMARK 470 LEU B 78 CG CD1 CD2 REMARK 470 HIS B 79 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 80 CG OD1 OD2 REMARK 470 MET B 83 CG SD CE REMARK 470 LYS B 84 CG CD CE NZ REMARK 470 LEU B 86 CG CD1 CD2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 LEU B 91 CG CD1 CD2 REMARK 470 GLN B 92 CG CD OE1 NE2 REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 VAL B 98 CG1 CG2 REMARK 470 LYS B 109 CG CD CE NZ REMARK 470 LEU B 112 CG CD1 CD2 REMARK 470 ASP B 113 CG OD1 OD2 REMARK 470 TRP B 114 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 114 CZ3 CH2 REMARK 470 ASN B 115 CG OD1 ND2 REMARK 470 LEU B 121 CG CD1 CD2 REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 GLU B 125 CG CD OE1 OE2 REMARK 470 LEU B 126 CG CD1 CD2 REMARK 470 GLN B 127 CG CD OE1 NE2 REMARK 470 PHE B 130 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 11 -165.18 -73.07 REMARK 500 ILE A 36 -71.62 -79.45 REMARK 500 ASP A 47 -102.08 55.38 REMARK 500 MET A 67 38.31 -84.74 REMARK 500 ASP A 105 70.66 49.27 REMARK 500 PRO A 110 104.88 -58.05 REMARK 500 THR B 68 144.02 -173.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 83.4 REMARK 620 3 GNP A 201 O1G 163.7 80.4 REMARK 620 4 GNP A 201 O2B 81.6 125.3 106.6 REMARK 620 5 HOH A 301 O 69.3 65.5 102.1 60.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 DBREF 6NTC A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6NTC B 55 131 UNP P04049 RAF1_HUMAN 55 131 SEQADV 6NTC GLY A -4 UNP P01112 EXPRESSION TAG SEQADV 6NTC ALA A -3 UNP P01112 EXPRESSION TAG SEQADV 6NTC MET A -2 UNP P01112 EXPRESSION TAG SEQADV 6NTC ASP A -1 UNP P01112 EXPRESSION TAG SEQADV 6NTC PRO A 0 UNP P01112 EXPRESSION TAG SEQADV 6NTC VAL A 12 UNP P01112 GLY 12 ENGINEERED MUTATION SEQADV 6NTC GLY B 51 UNP P04049 EXPRESSION TAG SEQADV 6NTC ALA B 52 UNP P04049 EXPRESSION TAG SEQADV 6NTC MET B 53 UNP P04049 EXPRESSION TAG SEQADV 6NTC ASP B 54 UNP P04049 EXPRESSION TAG SEQADV 6NTC LEU B 61 UNP P04049 PHE 61 ENGINEERED MUTATION SEQADV 6NTC GLN B 65 UNP P04049 LYS 65 ENGINEERED MUTATION SEQADV 6NTC GLU B 66 UNP P04049 GLN 66 ENGINEERED MUTATION SEQADV 6NTC TRP B 67 UNP P04049 ARG 67 ENGINEERED MUTATION SEQADV 6NTC LYS B 71 UNP P04049 ASN 71 ENGINEERED MUTATION SEQADV 6NTC SER B 81 UNP P04049 CYS 81 ENGINEERED MUTATION SEQADV 6NTC ARG B 88 UNP P04049 VAL 88 ENGINEERED MUTATION SEQADV 6NTC HIS B 89 UNP P04049 ARG 89 ENGINEERED MUTATION SEQADV 6NTC SER B 95 UNP P04049 CYS 95 ENGINEERED MUTATION SEQADV 6NTC SER B 96 UNP P04049 CYS 96 ENGINEERED MUTATION SEQRES 1 A 171 GLY ALA MET ASP PRO MET THR GLU TYR LYS LEU VAL VAL SEQRES 2 A 171 VAL GLY ALA VAL GLY VAL GLY LYS SER ALA LEU THR ILE SEQRES 3 A 171 GLN LEU ILE GLN ASN HIS PHE VAL ASP GLU TYR ASP PRO SEQRES 4 A 171 THR ILE GLU ASP SER TYR ARG LYS GLN VAL VAL ILE ASP SEQRES 5 A 171 GLY GLU THR CYS LEU LEU ASP ILE LEU ASP THR ALA GLY SEQRES 6 A 171 GLN GLU GLU TYR SER ALA MET ARG ASP GLN TYR MET ARG SEQRES 7 A 171 THR GLY GLU GLY PHE LEU CYS VAL PHE ALA ILE ASN ASN SEQRES 8 A 171 THR LYS SER PHE GLU ASP ILE HIS GLN TYR ARG GLU GLN SEQRES 9 A 171 ILE LYS ARG VAL LYS ASP SER ASP ASP VAL PRO MET VAL SEQRES 10 A 171 LEU VAL GLY ASN LYS CYS ASP LEU ALA ALA ARG THR VAL SEQRES 11 A 171 GLU SER ARG GLN ALA GLN ASP LEU ALA ARG SER TYR GLY SEQRES 12 A 171 ILE PRO TYR ILE GLU THR SER ALA LYS THR ARG GLN GLY SEQRES 13 A 171 VAL GLU ASP ALA PHE TYR THR LEU VAL ARG GLU ILE ARG SEQRES 14 A 171 GLN HIS SEQRES 1 B 81 GLY ALA MET ASP SER ASN THR ILE ARG VAL LEU LEU PRO SEQRES 2 B 81 ASN GLN GLU TRP THR VAL VAL LYS VAL ARG ASN GLY MET SEQRES 3 B 81 SER LEU HIS ASP SER LEU MET LYS ALA LEU LYS ARG HIS SEQRES 4 B 81 GLY LEU GLN PRO GLU SER SER ALA VAL PHE ARG LEU LEU SEQRES 5 B 81 HIS GLU HIS LYS GLY LYS LYS ALA ARG LEU ASP TRP ASN SEQRES 6 B 81 THR ASP ALA ALA SER LEU ILE GLY GLU GLU LEU GLN VAL SEQRES 7 B 81 ASP PHE LEU HET GNP A 201 32 HET GOL A 202 6 HET MG A 203 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 GOL C3 H8 O3 FORMUL 5 MG MG 2+ FORMUL 6 HOH *5(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 TYR A 64 ALA A 66 5 3 HELIX 3 AA3 MET A 67 GLY A 75 1 9 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 LYS A 104 1 13 HELIX 6 AA6 GLU A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 GLN A 165 1 15 HELIX 8 AA8 SER B 77 LEU B 82 1 6 HELIX 9 AA9 LEU B 82 GLY B 90 1 9 HELIX 10 AB1 ASP B 117 ILE B 122 5 6 SHEET 1 AA110 TYR A 141 GLU A 143 0 SHEET 2 AA110 MET A 111 ASN A 116 1 N LEU A 113 O ILE A 142 SHEET 3 AA110 GLY A 77 ALA A 83 1 N PHE A 82 O ASN A 116 SHEET 4 AA110 MET A 1 GLY A 10 1 N VAL A 7 O LEU A 79 SHEET 5 AA110 GLU A 49 ASP A 57 1 O ASP A 54 N LEU A 6 SHEET 6 AA110 GLU A 37 ILE A 46 -1 N ASP A 38 O ASP A 57 SHEET 7 AA110 GLU B 66 VAL B 70 -1 O TRP B 67 N SER A 39 SHEET 8 AA110 ILE B 58 LEU B 62 -1 N LEU B 62 O GLU B 66 SHEET 9 AA110 LEU B 126 ASP B 129 1 O LEU B 126 N LEU B 61 SHEET 10 AA110 ALA B 97 VAL B 98 -1 N ALA B 97 O ASP B 129 LINK OG SER A 17 MG MG A 203 1555 1555 1.92 LINK OG1 THR A 35 MG MG A 203 1555 1555 2.28 LINK O1G GNP A 201 MG MG A 203 1555 1555 1.95 LINK O2B GNP A 201 MG MG A 203 1555 1555 2.47 LINK MG MG A 203 O HOH A 301 1555 1555 2.13 SITE 1 AC1 22 VAL A 12 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC1 22 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC1 22 ASP A 30 GLU A 31 TYR A 32 PRO A 34 SITE 4 AC1 22 THR A 35 ASN A 116 LYS A 117 ASP A 119 SITE 5 AC1 22 LEU A 120 SER A 145 ALA A 146 LYS A 147 SITE 6 AC1 22 MG A 203 HOH A 301 SITE 1 AC2 4 GLN A 150 GLY A 151 GLU A 153 ASP A 154 SITE 1 AC3 4 SER A 17 THR A 35 GNP A 201 HOH A 301 CRYST1 91.619 91.619 151.412 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010915 0.006302 0.000000 0.00000 SCALE2 0.000000 0.012603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006604 0.00000