HEADER LYASE 29-JAN-19 6NTE TITLE CRYSTAL STRUCTURE OF SYNECHOCYSTIS DIHYDROXYACID DEHYDRATASE (DHAD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROXY-ACID DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DAD; COMPND 5 EC: 4.2.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 STRAIN: PCC 6803; SOURCE 5 GENE: ILVD, SLR0452; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DEHYDRATASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.MACTAVISH,S.BRUNER REVDAT 3 11-OCT-23 6NTE 1 REMARK REVDAT 2 17-MAR-21 6NTE 1 TITLE JRNL REVDAT 1 04-MAR-20 6NTE 0 JRNL AUTH P.ZHANG,B.S.MACTAVISH,G.YANG,M.CHEN,J.ROH,K.R.NEWSOME, JRNL AUTH 2 S.D.BRUNER,Y.DING JRNL TITL CYANOBACTERIAL DIHYDROXYACID DEHYDRATASES ARE A PROMISING JRNL TITL 2 GROWTH INHIBITION TARGET. JRNL REF ACS CHEM.BIOL. V. 15 2281 2020 JRNL REFN ESSN 1554-8937 JRNL PMID 32786290 JRNL DOI 10.1021/ACSCHEMBIO.0C00507 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 40228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.350 REMARK 3 FREE R VALUE TEST SET COUNT : 2153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1300 - 5.7400 1.00 2624 153 0.1697 0.1928 REMARK 3 2 5.7400 - 4.5600 1.00 2575 152 0.1664 0.1967 REMARK 3 3 4.5600 - 3.9800 1.00 2548 167 0.1435 0.1948 REMARK 3 4 3.9800 - 3.6200 0.99 2547 146 0.1588 0.2098 REMARK 3 5 3.6200 - 3.3600 1.00 2563 130 0.1574 0.2151 REMARK 3 6 3.3600 - 3.1600 1.00 2573 120 0.1688 0.2116 REMARK 3 7 3.1600 - 3.0000 1.00 2550 146 0.1774 0.2599 REMARK 3 8 3.0000 - 2.8700 1.00 2495 175 0.1744 0.2275 REMARK 3 9 2.8700 - 2.7600 1.00 2545 160 0.1819 0.2665 REMARK 3 10 2.7600 - 2.6700 1.00 2529 132 0.1911 0.2542 REMARK 3 11 2.6700 - 2.5800 1.00 2587 99 0.1980 0.2729 REMARK 3 12 2.5800 - 2.5100 1.00 2565 138 0.2009 0.2765 REMARK 3 13 2.5100 - 2.4400 1.00 2527 147 0.2014 0.2744 REMARK 3 14 2.4400 - 2.3800 1.00 2511 154 0.2046 0.2862 REMARK 3 15 2.3800 - 2.3300 0.92 2336 134 0.2395 0.3078 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.263 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.609 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7132 REMARK 3 ANGLE : 0.988 9678 REMARK 3 CHIRALITY : 0.054 1149 REMARK 3 PLANARITY : 0.006 1260 REMARK 3 DIHEDRAL : 8.895 4314 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 35 THROUGH 150 OR REMARK 3 RESID 193 THROUGH 561)) REMARK 3 SELECTION : CHAIN 'B' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40235 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 37.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.11050 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.71350 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.13_2998 REMARK 200 STARTING MODEL: 2GP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1M BIS-TRIS, 25% PEG 3,350, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.12900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 ASN A 4 REMARK 465 PRO A 5 REMARK 465 ARG A 6 REMARK 465 SER A 7 REMARK 465 GLN A 8 REMARK 465 VAL A 9 REMARK 465 ILE A 10 REMARK 465 THR A 11 REMARK 465 GLN A 12 REMARK 465 GLY A 13 REMARK 465 THR A 14 REMARK 465 GLN A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 PRO A 18 REMARK 465 ASN A 19 REMARK 465 ARG A 20 REMARK 465 ALA A 21 REMARK 465 MET A 22 REMARK 465 LEU A 23 REMARK 465 ARG A 24 REMARK 465 ALA A 25 REMARK 465 VAL A 26 REMARK 465 GLY A 27 REMARK 465 PHE A 28 REMARK 465 GLY A 29 REMARK 465 ASP A 30 REMARK 465 ASP A 31 REMARK 465 ASP A 32 REMARK 465 PHE A 33 REMARK 465 THR A 34 REMARK 465 GLY A 152 REMARK 465 HIS A 153 REMARK 465 TYR A 154 REMARK 465 ALA A 155 REMARK 465 GLY A 156 REMARK 465 GLU A 157 REMARK 465 ASP A 158 REMARK 465 LEU A 159 REMARK 465 THR A 160 REMARK 465 VAL A 161 REMARK 465 VAL A 162 REMARK 465 SER A 163 REMARK 465 ALA A 164 REMARK 465 PHE A 165 REMARK 465 GLU A 166 REMARK 465 ALA A 167 REMARK 465 VAL A 168 REMARK 465 GLY A 169 REMARK 465 GLN A 170 REMARK 465 TYR A 171 REMARK 465 SER A 172 REMARK 465 ALA A 173 REMARK 465 GLY A 174 REMARK 465 LYS A 175 REMARK 465 ILE A 176 REMARK 465 ASP A 177 REMARK 465 GLU A 178 REMARK 465 GLU A 179 REMARK 465 THR A 180 REMARK 465 LEU A 181 REMARK 465 TYR A 182 REMARK 465 GLY A 183 REMARK 465 ILE A 184 REMARK 465 GLU A 185 REMARK 465 ARG A 186 REMARK 465 ASN A 187 REMARK 465 ALA A 188 REMARK 465 CYS A 189 REMARK 465 PRO A 190 REMARK 465 GLY A 191 REMARK 465 ALA A 192 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 ASN B 4 REMARK 465 PRO B 5 REMARK 465 ARG B 6 REMARK 465 SER B 7 REMARK 465 GLN B 8 REMARK 465 VAL B 9 REMARK 465 ILE B 10 REMARK 465 THR B 11 REMARK 465 GLN B 12 REMARK 465 GLY B 13 REMARK 465 THR B 14 REMARK 465 GLN B 15 REMARK 465 ARG B 16 REMARK 465 SER B 17 REMARK 465 PRO B 18 REMARK 465 ASN B 19 REMARK 465 ARG B 20 REMARK 465 ALA B 21 REMARK 465 MET B 22 REMARK 465 LEU B 23 REMARK 465 ARG B 24 REMARK 465 ALA B 25 REMARK 465 VAL B 26 REMARK 465 GLY B 27 REMARK 465 PHE B 28 REMARK 465 GLY B 29 REMARK 465 ASP B 30 REMARK 465 ASP B 31 REMARK 465 ASP B 32 REMARK 465 PHE B 33 REMARK 465 THR B 34 REMARK 465 PRO B 151 REMARK 465 GLY B 152 REMARK 465 HIS B 153 REMARK 465 TYR B 154 REMARK 465 ALA B 155 REMARK 465 GLY B 156 REMARK 465 GLU B 157 REMARK 465 ASP B 158 REMARK 465 LEU B 159 REMARK 465 THR B 160 REMARK 465 VAL B 161 REMARK 465 VAL B 162 REMARK 465 SER B 163 REMARK 465 ALA B 164 REMARK 465 PHE B 165 REMARK 465 GLU B 166 REMARK 465 ALA B 167 REMARK 465 VAL B 168 REMARK 465 GLY B 169 REMARK 465 GLN B 170 REMARK 465 TYR B 171 REMARK 465 SER B 172 REMARK 465 ALA B 173 REMARK 465 GLY B 174 REMARK 465 LYS B 175 REMARK 465 ILE B 176 REMARK 465 ASP B 177 REMARK 465 GLU B 178 REMARK 465 GLU B 179 REMARK 465 THR B 180 REMARK 465 LEU B 181 REMARK 465 TYR B 182 REMARK 465 GLY B 183 REMARK 465 ILE B 184 REMARK 465 GLU B 185 REMARK 465 ARG B 186 REMARK 465 ASN B 187 REMARK 465 ALA B 188 REMARK 465 CYS B 189 REMARK 465 PRO B 190 REMARK 465 GLY B 191 REMARK 465 ALA B 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 44 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 45 OG REMARK 470 THR A 46 OG1 CG2 REMARK 470 ILE A 47 CG1 CG2 CD1 REMARK 470 THR A 48 OG1 CG2 REMARK 470 SER A 81 OG REMARK 470 ASP A 82 CG OD1 OD2 REMARK 470 ILE A 84 CG1 CG2 CD1 REMARK 470 SER A 85 OG REMARK 470 MET A 86 CG SD CE REMARK 470 THR A 88 OG1 CG2 REMARK 470 TYR B 44 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 45 OG REMARK 470 THR B 46 OG1 CG2 REMARK 470 ILE B 47 CG1 CG2 CD1 REMARK 470 THR B 48 OG1 CG2 REMARK 470 SER B 81 OG REMARK 470 ASP B 82 CG OD1 OD2 REMARK 470 ILE B 84 CG1 CG2 CD1 REMARK 470 SER B 85 OG REMARK 470 MET B 86 CG SD CE REMARK 470 THR B 88 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 518 O HOH A 601 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 GLN A 427 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 44 68.31 65.80 REMARK 500 SER A 45 63.30 -112.91 REMARK 500 PRO A 49 5.29 -60.43 REMARK 500 ASP A 82 -3.37 82.91 REMARK 500 TYR A 217 -12.15 72.51 REMARK 500 ALA A 388 76.93 -153.51 REMARK 500 PRO A 402 35.34 -93.38 REMARK 500 TYR B 44 65.71 -167.20 REMARK 500 ILE B 47 69.95 28.87 REMARK 500 ASN B 51 48.92 -106.58 REMARK 500 THR B 88 -168.46 -108.03 REMARK 500 TYR B 217 -12.35 74.25 REMARK 500 ALA B 388 77.12 -154.18 REMARK 500 PRO B 402 38.48 -92.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 6NTE A 1 561 UNP P74689 ILVD_SYNY3 1 561 DBREF 6NTE B 1 561 UNP P74689 ILVD_SYNY3 1 561 SEQRES 1 A 561 MET SER ASN ASN PRO ARG SER GLN VAL ILE THR GLN GLY SEQRES 2 A 561 THR GLN ARG SER PRO ASN ARG ALA MET LEU ARG ALA VAL SEQRES 3 A 561 GLY PHE GLY ASP ASP ASP PHE THR LYS PRO ILE VAL GLY SEQRES 4 A 561 ILE ALA ASN GLY TYR SER THR ILE THR PRO CYS ASN MET SEQRES 5 A 561 GLY ILE ASN ASP LEU ALA LEU ARG ALA GLU ALA GLY LEU SEQRES 6 A 561 ARG THR ALA GLY ALA MET PRO GLN LEU PHE GLY THR ILE SEQRES 7 A 561 THR ILE SER ASP GLY ILE SER MET GLY THR GLU GLY MET SEQRES 8 A 561 LYS TYR SER LEU VAL SER ARG GLU VAL ILE ALA ASP SER SEQRES 9 A 561 ILE GLU THR VAL CYS ASN GLY GLN ARG MET ASP GLY VAL SEQRES 10 A 561 LEU ALA ILE GLY GLY CYS ASP LYS ASN MET PRO GLY ALA SEQRES 11 A 561 MET ILE ALA MET ALA ARG LEU ASN ILE PRO SER ILE PHE SEQRES 12 A 561 VAL TYR GLY GLY THR ILE LYS PRO GLY HIS TYR ALA GLY SEQRES 13 A 561 GLU ASP LEU THR VAL VAL SER ALA PHE GLU ALA VAL GLY SEQRES 14 A 561 GLN TYR SER ALA GLY LYS ILE ASP GLU GLU THR LEU TYR SEQRES 15 A 561 GLY ILE GLU ARG ASN ALA CYS PRO GLY ALA GLY SER CYS SEQRES 16 A 561 GLY GLY MET PHE THR ALA ASN THR MET SER SER ALA PHE SEQRES 17 A 561 GLU ALA MET GLY MET SER LEU PRO TYR SER SER THR MET SEQRES 18 A 561 ALA ALA VAL ASP GLY GLU LYS ALA ASP SER THR GLU GLU SEQRES 19 A 561 SER ALA LYS VAL LEU VAL GLU ALA ILE LYS LYS GLN ILE SEQRES 20 A 561 LEU PRO SER GLN ILE LEU THR ARG LYS ALA PHE GLU ASN SEQRES 21 A 561 ALA ILE ALA VAL ILE MET ALA VAL GLY GLY SER THR ASN SEQRES 22 A 561 ALA VAL LEU HIS LEU LEU ALA ILE ALA ASN THR ILE GLY SEQRES 23 A 561 VAL PRO LEU SER LEU ASP ASP PHE GLU THR ILE ARG HIS SEQRES 24 A 561 LYS VAL PRO VAL LEU CYS ASP LEU LYS PRO SER GLY LYS SEQRES 25 A 561 TYR VAL THR THR ASN LEU HIS ALA ALA GLY GLY ILE PRO SEQRES 26 A 561 GLN VAL MET LYS ILE LEU LEU VAL ASN GLY ILE LEU HIS SEQRES 27 A 561 GLY ASP ALA LEU THR ILE THR GLY GLN THR ILE ALA GLU SEQRES 28 A 561 VAL LEU ALA ASP ILE PRO ASP GLN PRO PRO ALA GLY GLN SEQRES 29 A 561 ASP VAL ILE HIS SER TRP ASP ASP PRO VAL TYR GLN GLU SEQRES 30 A 561 GLY HIS LEU ALA VAL LEU LYS GLY ASN LEU ALA THR GLU SEQRES 31 A 561 GLY SER VAL ALA LYS ILE SER GLY VAL LYS LYS PRO VAL SEQRES 32 A 561 ILE THR GLY PRO ALA LYS VAL PHE GLU SER GLU GLU ASP SEQRES 33 A 561 CYS LEU GLU ALA ILE LEU ALA GLY LYS ILE GLN ALA GLY SEQRES 34 A 561 ASP VAL VAL VAL VAL ARG TYR GLU GLY PRO LYS GLY GLY SEQRES 35 A 561 PRO GLY MET ARG GLU MET LEU ALA PRO THR SER ALA ILE SEQRES 36 A 561 ILE GLY ALA GLY LEU GLY ASP SER VAL GLY LEU ILE THR SEQRES 37 A 561 ASP GLY ARG PHE SER GLY GLY THR TYR GLY LEU VAL VAL SEQRES 38 A 561 GLY HIS VAL ALA PRO GLU ALA TYR VAL GLY GLY ALA ILE SEQRES 39 A 561 ALA LEU VAL GLN GLU GLY ASP GLN ILE THR ILE ASP ALA SEQRES 40 A 561 GLY LYS ARG LEU LEU GLN LEU ASN ILE SER GLU GLU GLU SEQRES 41 A 561 LEU ALA GLN ARG ARG ALA GLN TRP THR PRO PRO GLN PRO SEQRES 42 A 561 ARG TYR PRO ARG GLY ILE LEU ALA LYS TYR ALA LYS LEU SEQRES 43 A 561 VAL SER SER SER SER LEU GLY ALA VAL THR ASP ILE ASP SEQRES 44 A 561 LEU PHE SEQRES 1 B 561 MET SER ASN ASN PRO ARG SER GLN VAL ILE THR GLN GLY SEQRES 2 B 561 THR GLN ARG SER PRO ASN ARG ALA MET LEU ARG ALA VAL SEQRES 3 B 561 GLY PHE GLY ASP ASP ASP PHE THR LYS PRO ILE VAL GLY SEQRES 4 B 561 ILE ALA ASN GLY TYR SER THR ILE THR PRO CYS ASN MET SEQRES 5 B 561 GLY ILE ASN ASP LEU ALA LEU ARG ALA GLU ALA GLY LEU SEQRES 6 B 561 ARG THR ALA GLY ALA MET PRO GLN LEU PHE GLY THR ILE SEQRES 7 B 561 THR ILE SER ASP GLY ILE SER MET GLY THR GLU GLY MET SEQRES 8 B 561 LYS TYR SER LEU VAL SER ARG GLU VAL ILE ALA ASP SER SEQRES 9 B 561 ILE GLU THR VAL CYS ASN GLY GLN ARG MET ASP GLY VAL SEQRES 10 B 561 LEU ALA ILE GLY GLY CYS ASP LYS ASN MET PRO GLY ALA SEQRES 11 B 561 MET ILE ALA MET ALA ARG LEU ASN ILE PRO SER ILE PHE SEQRES 12 B 561 VAL TYR GLY GLY THR ILE LYS PRO GLY HIS TYR ALA GLY SEQRES 13 B 561 GLU ASP LEU THR VAL VAL SER ALA PHE GLU ALA VAL GLY SEQRES 14 B 561 GLN TYR SER ALA GLY LYS ILE ASP GLU GLU THR LEU TYR SEQRES 15 B 561 GLY ILE GLU ARG ASN ALA CYS PRO GLY ALA GLY SER CYS SEQRES 16 B 561 GLY GLY MET PHE THR ALA ASN THR MET SER SER ALA PHE SEQRES 17 B 561 GLU ALA MET GLY MET SER LEU PRO TYR SER SER THR MET SEQRES 18 B 561 ALA ALA VAL ASP GLY GLU LYS ALA ASP SER THR GLU GLU SEQRES 19 B 561 SER ALA LYS VAL LEU VAL GLU ALA ILE LYS LYS GLN ILE SEQRES 20 B 561 LEU PRO SER GLN ILE LEU THR ARG LYS ALA PHE GLU ASN SEQRES 21 B 561 ALA ILE ALA VAL ILE MET ALA VAL GLY GLY SER THR ASN SEQRES 22 B 561 ALA VAL LEU HIS LEU LEU ALA ILE ALA ASN THR ILE GLY SEQRES 23 B 561 VAL PRO LEU SER LEU ASP ASP PHE GLU THR ILE ARG HIS SEQRES 24 B 561 LYS VAL PRO VAL LEU CYS ASP LEU LYS PRO SER GLY LYS SEQRES 25 B 561 TYR VAL THR THR ASN LEU HIS ALA ALA GLY GLY ILE PRO SEQRES 26 B 561 GLN VAL MET LYS ILE LEU LEU VAL ASN GLY ILE LEU HIS SEQRES 27 B 561 GLY ASP ALA LEU THR ILE THR GLY GLN THR ILE ALA GLU SEQRES 28 B 561 VAL LEU ALA ASP ILE PRO ASP GLN PRO PRO ALA GLY GLN SEQRES 29 B 561 ASP VAL ILE HIS SER TRP ASP ASP PRO VAL TYR GLN GLU SEQRES 30 B 561 GLY HIS LEU ALA VAL LEU LYS GLY ASN LEU ALA THR GLU SEQRES 31 B 561 GLY SER VAL ALA LYS ILE SER GLY VAL LYS LYS PRO VAL SEQRES 32 B 561 ILE THR GLY PRO ALA LYS VAL PHE GLU SER GLU GLU ASP SEQRES 33 B 561 CYS LEU GLU ALA ILE LEU ALA GLY LYS ILE GLN ALA GLY SEQRES 34 B 561 ASP VAL VAL VAL VAL ARG TYR GLU GLY PRO LYS GLY GLY SEQRES 35 B 561 PRO GLY MET ARG GLU MET LEU ALA PRO THR SER ALA ILE SEQRES 36 B 561 ILE GLY ALA GLY LEU GLY ASP SER VAL GLY LEU ILE THR SEQRES 37 B 561 ASP GLY ARG PHE SER GLY GLY THR TYR GLY LEU VAL VAL SEQRES 38 B 561 GLY HIS VAL ALA PRO GLU ALA TYR VAL GLY GLY ALA ILE SEQRES 39 B 561 ALA LEU VAL GLN GLU GLY ASP GLN ILE THR ILE ASP ALA SEQRES 40 B 561 GLY LYS ARG LEU LEU GLN LEU ASN ILE SER GLU GLU GLU SEQRES 41 B 561 LEU ALA GLN ARG ARG ALA GLN TRP THR PRO PRO GLN PRO SEQRES 42 B 561 ARG TYR PRO ARG GLY ILE LEU ALA LYS TYR ALA LYS LEU SEQRES 43 B 561 VAL SER SER SER SER LEU GLY ALA VAL THR ASP ILE ASP SEQRES 44 B 561 LEU PHE FORMUL 3 HOH *256(H2 O) HELIX 1 AA1 MET A 52 ALA A 68 1 17 HELIX 2 AA2 THR A 88 MET A 91 5 4 HELIX 3 AA3 LYS A 92 GLN A 112 1 21 HELIX 4 AA4 MET A 127 ASN A 138 1 12 HELIX 5 AA5 PHE A 199 MET A 211 1 13 HELIX 6 AA6 TYR A 217 MET A 221 5 5 HELIX 7 AA7 ASP A 225 GLN A 246 1 22 HELIX 8 AA8 LEU A 248 LEU A 253 1 6 HELIX 9 AA9 THR A 254 VAL A 268 1 15 HELIX 10 AB1 THR A 272 GLY A 286 1 15 HELIX 11 AB2 SER A 290 VAL A 301 1 12 HELIX 12 AB3 VAL A 314 ALA A 321 1 8 HELIX 13 AB4 GLY A 322 ASN A 334 1 13 HELIX 14 AB5 THR A 348 LEU A 353 1 6 HELIX 15 AB6 SER A 413 ALA A 423 1 11 HELIX 16 AB7 LEU A 449 ALA A 458 1 10 HELIX 17 AB8 GLU A 487 GLY A 491 5 5 HELIX 18 AB9 GLY A 492 VAL A 497 5 6 HELIX 19 AC1 SER A 517 TRP A 528 1 12 HELIX 20 AC2 ARG A 537 VAL A 547 1 11 HELIX 21 AC3 SER A 549 GLY A 553 5 5 HELIX 22 AC4 ILE B 47 CYS B 50 5 4 HELIX 23 AC5 ASN B 51 ALA B 68 1 18 HELIX 24 AC6 THR B 88 MET B 91 5 4 HELIX 25 AC7 LYS B 92 GLN B 112 1 21 HELIX 26 AC8 MET B 127 ASN B 138 1 12 HELIX 27 AC9 PHE B 199 MET B 211 1 13 HELIX 28 AD1 TYR B 217 MET B 221 5 5 HELIX 29 AD2 ASP B 225 GLN B 246 1 22 HELIX 30 AD3 LEU B 248 LEU B 253 1 6 HELIX 31 AD4 THR B 254 VAL B 268 1 15 HELIX 32 AD5 THR B 272 GLY B 286 1 15 HELIX 33 AD6 SER B 290 VAL B 301 1 12 HELIX 34 AD7 VAL B 314 ALA B 321 1 8 HELIX 35 AD8 GLY B 322 ASN B 334 1 13 HELIX 36 AD9 THR B 348 LEU B 353 1 6 HELIX 37 AE1 SER B 413 ALA B 423 1 11 HELIX 38 AE2 LEU B 449 ALA B 458 1 10 HELIX 39 AE3 GLU B 487 GLY B 491 5 5 HELIX 40 AE4 GLY B 492 VAL B 497 5 6 HELIX 41 AE5 SER B 517 TRP B 528 1 12 HELIX 42 AE6 ARG B 537 VAL B 547 1 11 HELIX 43 AE7 SER B 549 GLY B 553 5 5 SHEET 1 AA1 4 MET A 71 GLY A 76 0 SHEET 2 AA1 4 ILE A 37 ASN A 42 1 N ASN A 42 O PHE A 75 SHEET 3 AA1 4 GLY A 116 GLY A 121 1 O GLY A 116 N GLY A 39 SHEET 4 AA1 4 SER A 141 TYR A 145 1 O VAL A 144 N ALA A 119 SHEET 1 AA2 8 LEU A 380 VAL A 382 0 SHEET 2 AA2 8 GLY A 391 LYS A 395 -1 O ALA A 394 N ALA A 381 SHEET 3 AA2 8 VAL A 480 ALA A 485 -1 O GLY A 482 N VAL A 393 SHEET 4 AA2 8 GLY A 465 THR A 468 1 N LEU A 466 O VAL A 481 SHEET 5 AA2 8 VAL A 431 VAL A 434 1 N VAL A 432 O GLY A 465 SHEET 6 AA2 8 VAL A 403 PHE A 411 1 N LYS A 409 O VAL A 433 SHEET 7 AA2 8 GLN A 502 ASP A 506 -1 O ILE A 505 N ILE A 404 SHEET 8 AA2 8 LEU A 511 LEU A 514 -1 O LEU A 511 N ASP A 506 SHEET 1 AA3 2 GLU A 447 MET A 448 0 SHEET 2 AA3 2 ARG A 471 PHE A 472 1 O ARG A 471 N MET A 448 SHEET 1 AA4 4 MET B 71 ILE B 78 0 SHEET 2 AA4 4 ILE B 37 SER B 45 1 N ASN B 42 O PHE B 75 SHEET 3 AA4 4 GLY B 116 GLY B 121 1 O LEU B 118 N GLY B 39 SHEET 4 AA4 4 SER B 141 TYR B 145 1 O VAL B 144 N ALA B 119 SHEET 1 AA5 8 LEU B 380 VAL B 382 0 SHEET 2 AA5 8 GLY B 391 LYS B 395 -1 O ALA B 394 N ALA B 381 SHEET 3 AA5 8 VAL B 480 ALA B 485 -1 O GLY B 482 N VAL B 393 SHEET 4 AA5 8 GLY B 465 THR B 468 1 N LEU B 466 O VAL B 481 SHEET 5 AA5 8 VAL B 431 VAL B 434 1 N VAL B 432 O GLY B 465 SHEET 6 AA5 8 VAL B 403 PHE B 411 1 N LYS B 409 O VAL B 433 SHEET 7 AA5 8 GLN B 502 ASP B 506 -1 O ILE B 505 N ILE B 404 SHEET 8 AA5 8 LEU B 511 LEU B 514 -1 O LEU B 511 N ASP B 506 SHEET 1 AA6 2 GLU B 447 MET B 448 0 SHEET 2 AA6 2 ARG B 471 PHE B 472 1 O ARG B 471 N MET B 448 SSBOND 1 CYS A 123 CYS A 195 1555 1555 2.03 SSBOND 2 CYS B 123 CYS B 195 1555 1555 2.02 CISPEP 1 LYS A 308 PRO A 309 0 4.92 CISPEP 2 GLY A 442 PRO A 443 0 -9.21 CISPEP 3 ALA A 485 PRO A 486 0 0.69 CISPEP 4 LYS B 308 PRO B 309 0 5.26 CISPEP 5 GLY B 442 PRO B 443 0 -7.77 CISPEP 6 ALA B 485 PRO B 486 0 -1.47 CRYST1 79.790 74.258 80.680 90.00 90.15 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012533 0.000000 0.000032 0.00000 SCALE2 0.000000 0.013467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012395 0.00000