HEADER VIRAL PROTEIN 29-JAN-19 6NTF TITLE CRYSTAL STRUCTURE OF A COMPUTATIONALLY OPTIMIZED H5 INFLUENZA TITLE 2 HEMAGGLUTININ COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED INFLUENZA VIRUS; SOURCE 3 ORGANISM_TAXID: 11309; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS VACCINE, INFLUENZA, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.HUANG,Y.BAR-PELED,J.J.MOUSA REVDAT 4 11-OCT-23 6NTF 1 HETSYN REVDAT 3 29-JUL-20 6NTF 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 25-SEP-19 6NTF 1 JRNL REVDAT 1 18-SEP-19 6NTF 0 JRNL AUTH Y.BAR-PELED,J.HUANG,I.A.NUNEZ,S.R.PIERCE,J.W.ECKER,T.M.ROSS, JRNL AUTH 2 J.J.MOUSA JRNL TITL STRUCTURAL AND ANTIGENIC CHARACTERIZATION OF A JRNL TITL 2 COMPUTATIONALLY-OPTIMIZED H5 HEMAGGLUTININ INFLUENZA JRNL TITL 3 VACCINE. JRNL REF VACCINE V. 37 6022 2019 JRNL REFN ESSN 1873-2518 JRNL PMID 31481254 JRNL DOI 10.1016/J.VACCINE.2019.08.062 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 22428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0887 - 5.5976 1.00 2841 144 0.2048 0.2221 REMARK 3 2 5.5976 - 4.4440 1.00 2718 147 0.2040 0.2544 REMARK 3 3 4.4440 - 3.8825 1.00 2695 124 0.2137 0.2478 REMARK 3 4 3.8825 - 3.5277 0.99 2642 139 0.2425 0.2884 REMARK 3 5 3.5277 - 3.2749 0.99 2595 153 0.2848 0.3336 REMARK 3 6 3.2749 - 3.0818 0.98 2640 109 0.3149 0.3778 REMARK 3 7 3.0818 - 2.9275 0.98 2612 138 0.3656 0.3921 REMARK 3 8 2.9275 - 2.8001 0.99 2592 139 0.4150 0.4872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4151 REMARK 3 ANGLE : 1.333 5623 REMARK 3 CHIRALITY : 0.077 612 REMARK 3 PLANARITY : 0.006 729 REMARK 3 DIHEDRAL : 35.743 1496 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22588 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.082 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.12770 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.31480 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2FK0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 200 MM MGCL2.6H2O, AND REMARK 280 100 MM HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.75900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.30572 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 150.02800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.75900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.30572 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 150.02800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.75900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.30572 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 150.02800 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.75900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.30572 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 150.02800 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.75900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.30572 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 150.02800 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.75900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.30572 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 150.02800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.61144 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 300.05600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 58.61144 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 300.05600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 58.61144 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 300.05600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 58.61144 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 300.05600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 58.61144 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 300.05600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 58.61144 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 300.05600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -50.75900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -87.91717 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 50.75900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -87.91717 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 322 REMARK 465 ARG A 323 REMARK 465 GLU A 324 REMARK 465 SER A 325 REMARK 465 ARG A 326 REMARK 465 ARG A 327 REMARK 465 LYS A 328 REMARK 465 LYS A 329 REMARK 465 ARG A 330 REMARK 465 GLY A 331 REMARK 465 GLU A 502 REMARK 465 ILE A 503 REMARK 465 SER A 504 REMARK 465 GLY A 505 REMARK 465 VAL A 506 REMARK 465 GLY A 507 REMARK 465 TYR A 508 REMARK 465 ILE A 509 REMARK 465 PRO A 510 REMARK 465 GLU A 511 REMARK 465 ALA A 512 REMARK 465 PRO A 513 REMARK 465 ARG A 514 REMARK 465 ASP A 515 REMARK 465 GLY A 516 REMARK 465 GLN A 517 REMARK 465 ALA A 518 REMARK 465 TYR A 519 REMARK 465 VAL A 520 REMARK 465 ARG A 521 REMARK 465 LYS A 522 REMARK 465 ASP A 523 REMARK 465 GLY A 524 REMARK 465 GLU A 525 REMARK 465 TRP A 526 REMARK 465 VAL A 527 REMARK 465 LEU A 528 REMARK 465 LEU A 529 REMARK 465 SER A 530 REMARK 465 THR A 531 REMARK 465 PHE A 532 REMARK 465 LEU A 533 REMARK 465 GLY A 534 REMARK 465 SER A 535 REMARK 465 GLY A 536 REMARK 465 LEU A 537 REMARK 465 ASN A 538 REMARK 465 ASP A 539 REMARK 465 ILE A 540 REMARK 465 PHE A 541 REMARK 465 GLU A 542 REMARK 465 ALA A 543 REMARK 465 GLN A 544 REMARK 465 LYS A 545 REMARK 465 ILE A 546 REMARK 465 GLU A 547 REMARK 465 TRP A 548 REMARK 465 HIS A 549 REMARK 465 GLU A 550 REMARK 465 GLY A 551 REMARK 465 HIS A 552 REMARK 465 HIS A 553 REMARK 465 HIS A 554 REMARK 465 HIS A 555 REMARK 465 HIS A 556 REMARK 465 HIS A 557 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASN A 182 OE2 GLU A 186 1.27 REMARK 500 CA ASN A 182 OE2 GLU A 186 1.91 REMARK 500 O GLY A 334 CE2 PHE A 339 1.93 REMARK 500 O GLY A 334 CD2 PHE A 339 2.04 REMARK 500 O TRP A 76 ND2 ASN A 109 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 67 41.63 -103.13 REMARK 500 ASP A 68 56.79 -91.53 REMARK 500 ASP A 88 -154.83 -94.67 REMARK 500 LEU A 89 103.10 -58.00 REMARK 500 SER A 121 -7.83 -54.25 REMARK 500 HIS A 125 85.09 64.24 REMARK 500 CYS A 135 69.95 -118.27 REMARK 500 GLN A 138 54.96 35.87 REMARK 500 THR A 167 -158.57 -123.04 REMARK 500 ASN A 168 -15.60 79.62 REMARK 500 GLN A 169 -11.76 72.14 REMARK 500 GLN A 192 -22.57 73.06 REMARK 500 ASN A 240 75.90 66.08 REMARK 500 LYS A 259 76.95 -101.72 REMARK 500 ASP A 261 87.18 63.10 REMARK 500 SER A 262 -157.97 -130.50 REMARK 500 ASN A 273 67.01 64.08 REMARK 500 HIS A 295 145.01 -171.29 REMARK 500 GLU A 369 -17.83 72.75 REMARK 500 LEU A 454 -13.28 82.99 REMARK 500 GLN A 455 -68.50 -93.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1012 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 8 O REMARK 620 2 ARG A 318 O 124.7 REMARK 620 3 SER A 320 OG 140.1 90.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1015 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 52 O REMARK 620 2 ARG A 53 O 65.0 REMARK 620 3 CYS A 55 O 76.3 108.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1014 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 449 OH REMARK 620 2 CYS A 467 O 111.9 REMARK 620 N 1 DBREF 6NTF A 1 557 PDB 6NTF 6NTF 1 557 SEQRES 1 A 557 ASP GLN ILE CYS ILE GLY TYR HIS ALA ASN ASN SER THR SEQRES 2 A 557 GLU GLN VAL ASP THR ILE MET GLU LYS ASN VAL THR VAL SEQRES 3 A 557 THR HIS ALA GLN ASP ILE LEU GLU LYS THR HIS ASN GLY SEQRES 4 A 557 LYS LEU CYS ASP LEU ASP GLY VAL LYS PRO LEU ILE LEU SEQRES 5 A 557 ARG ASP CYS SER VAL ALA GLY TRP LEU LEU GLY ASN PRO SEQRES 6 A 557 MET CYS ASP GLU PHE ILE ASN VAL PRO GLU TRP SER TYR SEQRES 7 A 557 ILE VAL GLU LYS ALA ASN PRO ALA ASN ASP LEU CYS PHE SEQRES 8 A 557 PRO GLY ASN PHE ASN ASP TYR GLU GLU LEU LYS HIS LEU SEQRES 9 A 557 LEU SER ARG ILE ASN HIS PHE GLU LYS ILE GLN ILE ILE SEQRES 10 A 557 PRO LYS SER SER TRP SER ASP HIS GLU ALA SER SER GLY SEQRES 11 A 557 VAL SER SER ALA CYS PRO TYR GLN GLY SER PRO SER PHE SEQRES 12 A 557 PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS ASN ASN THR SEQRES 13 A 557 TYR PRO THR ILE LYS ARG SER TYR ASN ASN THR ASN GLN SEQRES 14 A 557 GLU ASP LEU LEU VAL LEU TRP GLY ILE HIS HIS PRO ASN SEQRES 15 A 557 ASP ALA ALA GLU GLN THR ARG LEU TYR GLN ASN PRO THR SEQRES 16 A 557 THR TYR ILE SER VAL GLY THR SER THR LEU ASN GLN ARG SEQRES 17 A 557 LEU VAL PRO LYS ILE ALA THR ARG SER LYS VAL ASN GLY SEQRES 18 A 557 GLN SER GLY ARG MET GLU PHE PHE TRP THR ILE LEU LYS SEQRES 19 A 557 PRO ASN ASP ALA ILE ASN PHE GLU SER ASN GLY ASN PHE SEQRES 20 A 557 ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL LYS LYS GLY SEQRES 21 A 557 ASP SER ALA ILE MET LYS SER GLU LEU GLU TYR GLY ASN SEQRES 22 A 557 CYS ASN THR LYS CYS GLN THR PRO ILE GLY ALA ILE ASN SEQRES 23 A 557 SER SER MET PRO PHE HIS ASN ILE HIS PRO LEU THR ILE SEQRES 24 A 557 GLY GLU CYS PRO LYS TYR VAL LYS SER ASN ARG LEU VAL SEQRES 25 A 557 LEU ALA THR GLY LEU ARG ASN SER PRO GLN ARG GLU SER SEQRES 26 A 557 ARG ARG LYS LYS ARG GLY LEU PHE GLY ALA ILE ALA GLY SEQRES 27 A 557 PHE ILE GLU GLY GLY TRP GLN GLY MET VAL ASP GLY TRP SEQRES 28 A 557 TYR GLY TYR HIS HIS SER ASN GLU GLN GLY SER GLY TYR SEQRES 29 A 557 ALA ALA ASP LYS GLU SER THR GLN LYS ALA ILE ASP GLY SEQRES 30 A 557 VAL THR ASN LYS VAL ASN SER ILE ILE ASP LYS MET ASN SEQRES 31 A 557 THR GLN PHE GLU ALA VAL GLY ARG GLU PHE ASN ASN LEU SEQRES 32 A 557 GLU ARG ARG ILE GLU ASN LEU ASN LYS LYS MET GLU ASP SEQRES 33 A 557 GLY PHE LEU ASP VAL TRP THR TYR ASN ALA GLU LEU LEU SEQRES 34 A 557 VAL LEU MET GLU ASN GLU ARG THR LEU ASP PHE HIS ASP SEQRES 35 A 557 SER ASN VAL LYS ASN LEU TYR ASP LYS VAL ARG LEU GLN SEQRES 36 A 557 LEU ARG ASP ASN ALA LYS GLU LEU GLY ASN GLY CYS PHE SEQRES 37 A 557 GLU PHE TYR HIS LYS CYS ASP ASN GLU CYS MET GLU SER SEQRES 38 A 557 VAL ARG ASN GLY THR TYR ASP TYR PRO GLN TYR SER GLU SEQRES 39 A 557 GLU ALA ARG LEU LYS ARG GLU GLU ILE SER GLY VAL GLY SEQRES 40 A 557 TYR ILE PRO GLU ALA PRO ARG ASP GLY GLN ALA TYR VAL SEQRES 41 A 557 ARG LYS ASP GLY GLU TRP VAL LEU LEU SER THR PHE LEU SEQRES 42 A 557 GLY SER GLY LEU ASN ASP ILE PHE GLU ALA GLN LYS ILE SEQRES 43 A 557 GLU TRP HIS GLU GLY HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG A1005 14 HET NAG A1006 14 HET NAG A1007 14 HET PEG A1008 7 HET PEG A1009 7 HET PEG A1010 6 HET PEG A1011 7 HET MG A1012 1 HET MG A1013 1 HET MG A1014 1 HET MG A1015 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 7 PEG 4(C4 H10 O3) FORMUL 11 MG 4(MG 2+) HELIX 1 AA1 SER A 56 LEU A 62 1 7 HELIX 2 AA2 ASN A 64 ASP A 68 5 5 HELIX 3 AA3 ASP A 97 ARG A 107 1 11 HELIX 4 AA4 ASP A 183 TYR A 191 1 9 HELIX 5 AA5 GLU A 369 MET A 389 1 21 HELIX 6 AA6 GLU A 404 ARG A 453 1 50 HELIX 7 AA7 ASP A 475 GLY A 485 1 11 HELIX 8 AA8 TYR A 489 ARG A 500 1 12 SHEET 1 AA1 5 SER A 362 ALA A 366 0 SHEET 2 AA1 5 TYR A 352 SER A 357 -1 N TYR A 354 O ALA A 365 SHEET 3 AA1 5 GLN A 2 TYR A 7 -1 N GLY A 6 O GLY A 353 SHEET 4 AA1 5 CYS A 467 PHE A 470 -1 O PHE A 468 N ILE A 3 SHEET 5 AA1 5 ALA A 460 GLU A 462 -1 N LYS A 461 O GLU A 469 SHEET 1 AA2 2 GLN A 15 VAL A 16 0 SHEET 2 AA2 2 VAL A 24 THR A 25 -1 O VAL A 24 N VAL A 16 SHEET 1 AA3 2 ALA A 29 ASP A 31 0 SHEET 2 AA3 2 VAL A 312 ALA A 314 -1 O LEU A 313 N GLN A 30 SHEET 1 AA4 3 LEU A 33 GLU A 34 0 SHEET 2 AA4 3 PHE A 291 HIS A 292 1 O PHE A 291 N GLU A 34 SHEET 3 AA4 3 LYS A 304 TYR A 305 1 O LYS A 304 N HIS A 292 SHEET 1 AA5 2 LEU A 41 LEU A 44 0 SHEET 2 AA5 2 TYR A 271 THR A 276 1 O CYS A 274 N ASP A 43 SHEET 1 AA6 3 LEU A 50 ILE A 51 0 SHEET 2 AA6 3 ILE A 79 GLU A 81 1 O VAL A 80 N LEU A 50 SHEET 3 AA6 3 ILE A 264 LYS A 266 1 O MET A 265 N ILE A 79 SHEET 1 AA7 5 GLY A 93 PHE A 95 0 SHEET 2 AA7 5 ARG A 225 LEU A 233 1 O PHE A 228 N ASN A 94 SHEET 3 AA7 5 ASP A 171 HIS A 180 -1 N LEU A 172 O LEU A 233 SHEET 4 AA7 5 TYR A 252 LYS A 258 -1 O TYR A 254 N LEU A 173 SHEET 5 AA7 5 HIS A 110 GLN A 115 -1 N ILE A 114 O ALA A 253 SHEET 1 AA8 5 GLY A 93 PHE A 95 0 SHEET 2 AA8 5 ARG A 225 LEU A 233 1 O PHE A 228 N ASN A 94 SHEET 3 AA8 5 ASP A 171 HIS A 180 -1 N LEU A 172 O LEU A 233 SHEET 4 AA8 5 PHE A 247 PRO A 250 -1 O ILE A 248 N GLY A 177 SHEET 5 AA8 5 VAL A 147 TRP A 149 -1 N VAL A 148 O ALA A 249 SHEET 1 AA9 2 SER A 132 TYR A 137 0 SHEET 2 AA9 2 SER A 140 SER A 142 -1 O SER A 140 N TYR A 137 SHEET 1 AB1 4 ILE A 160 ARG A 162 0 SHEET 2 AB1 4 PHE A 241 SER A 243 -1 O SER A 243 N ILE A 160 SHEET 3 AB1 4 ILE A 198 GLY A 201 -1 N SER A 199 O GLU A 242 SHEET 4 AB1 4 ASN A 206 LEU A 209 -1 O LEU A 209 N ILE A 198 SHEET 1 AB2 3 GLY A 283 ALA A 284 0 SHEET 2 AB2 3 CYS A 278 THR A 280 -1 N THR A 280 O GLY A 283 SHEET 3 AB2 3 ILE A 299 GLY A 300 -1 O ILE A 299 N GLN A 279 SSBOND 1 CYS A 4 CYS A 467 1555 1555 2.07 SSBOND 2 CYS A 42 CYS A 274 1555 1555 2.06 SSBOND 3 CYS A 55 CYS A 67 1555 1555 2.07 SSBOND 4 CYS A 278 CYS A 302 1555 1555 2.06 SSBOND 5 CYS A 474 CYS A 478 1555 1555 2.05 LINK ND2 ASN A 23 C1 NAG A1005 1555 1555 1.45 LINK N PHE A 95 C1 PEG A1010 1555 1555 1.44 LINK ND2 ASN A 154 C1 NAG A1006 1555 1555 1.43 LINK ND2 ASN A 165 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 286 C1 NAG A1007 1555 1555 1.45 LINK ND2 ASN A 484 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.48 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O HIS A 8 MG MG A1012 1555 1555 2.73 LINK O LEU A 52 MG MG A1015 1555 1555 2.54 LINK O ARG A 53 MG MG A1015 1555 1555 2.68 LINK O CYS A 55 MG MG A1015 1555 1555 2.94 LINK O ARG A 318 MG MG A1012 1555 1555 2.98 LINK OG SER A 320 MG MG A1012 1555 1555 2.90 LINK O GLY A 342 MG MG A1013 1555 1555 2.80 LINK OH TYR A 449 MG MG A1014 1555 1555 2.88 LINK O CYS A 467 MG MG A1014 1555 1555 2.91 CRYST1 101.518 101.518 450.084 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009850 0.005687 0.000000 0.00000 SCALE2 0.000000 0.011374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002222 0.00000