HEADER HYDROLASE 30-JAN-19 6NTP TITLE PTP1B DOMAIN OF PTP1B-LOV2 CHIMERA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 1,NPH1-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-282; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1B,PTP-1B; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, AVENA SATIVA; SOURCE 3 ORGANISM_COMMON: HUMAN, OAT; SOURCE 4 ORGANISM_TAXID: 9606, 4498; SOURCE 5 GENE: PTPN1, PTP1B, NPH1-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN TYROSINE PHOSPHATASE, PROTEIN PHOSPHORYLATION, SIGNALING, KEYWDS 2 DIABETES, OBESITY, CANCER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.HONGDUSIT,B.SANKARAN,P.H.ZWART,J.M.FOX REVDAT 3 11-OCT-23 6NTP 1 REMARK REVDAT 2 19-FEB-20 6NTP 1 JRNL REVDAT 1 22-JAN-20 6NTP 0 JRNL AUTH A.HONGDUSIT,P.H.ZWART,B.SANKARAN,J.M.FOX JRNL TITL MINIMALLY DISRUPTIVE OPTICAL CONTROL OF PROTEIN TYROSINE JRNL TITL 2 PHOSPHATASE 1B. JRNL REF NAT COMMUN V. 11 788 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32034150 JRNL DOI 10.1038/S41467-020-14567-8 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 37270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1947 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2642 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE SET COUNT : 173 REMARK 3 BIN FREE R VALUE : 0.4330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.223 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2414 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2255 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3266 ; 1.488 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5268 ; 1.290 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 6.400 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;31.290 ;22.059 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;14.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.227 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 308 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2681 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 521 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1145 ; 2.079 ; 1.922 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1144 ; 2.059 ; 1.919 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1435 ; 3.186 ; 2.865 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1436 ; 3.192 ; 2.870 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1269 ; 3.096 ; 2.329 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1270 ; 3.096 ; 2.332 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1821 ; 4.708 ; 3.344 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2688 ; 7.793 ;24.050 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2640 ; 7.708 ;23.205 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 282 REMARK 3 ORIGIN FOR THE GROUP (A): -36.3540 30.0920 -2.3520 REMARK 3 T TENSOR REMARK 3 T11: 0.1660 T22: 0.1350 REMARK 3 T33: 0.0029 T12: -0.0777 REMARK 3 T13: -0.0049 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.2373 L22: 2.5414 REMARK 3 L33: 2.3607 L12: 0.2513 REMARK 3 L13: -0.0996 L23: 0.6659 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: 0.0123 S13: 0.0238 REMARK 3 S21: -0.0649 S22: -0.0693 S23: 0.0787 REMARK 3 S31: -0.1761 S32: -0.2013 S33: 0.0220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6NTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99994 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39530 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 52.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.02500 REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.07100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3A5J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 200 MM MAGNESIUM REMARK 280 ACETATE, AND 14% POLYETHYLENE GLYCOL 8000, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.24900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.49800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.49800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.24900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 60 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 283 REMARK 465 ASP A 284 REMARK 465 SER A 285 REMARK 465 SER A 286 REMARK 465 VAL A 287 REMARK 465 GLN A 288 REMARK 465 ASP A 289 REMARK 465 GLN A 290 REMARK 465 TRP A 291 REMARK 465 LYS A 292 REMARK 465 GLU A 293 REMARK 465 LEU A 294 REMARK 465 SER A 295 REMARK 465 HIS A 296 REMARK 465 GLU A 297 REMARK 465 ASP A 298 REMARK 465 ALA A 299 REMARK 465 ALA A 300 REMARK 465 THR A 301 REMARK 465 LEU A 302 REMARK 465 GLU A 303 REMARK 465 ARG A 304 REMARK 465 ILE A 305 REMARK 465 GLU A 306 REMARK 465 LYS A 307 REMARK 465 ASN A 308 REMARK 465 PHE A 309 REMARK 465 VAL A 310 REMARK 465 ILE A 311 REMARK 465 THR A 312 REMARK 465 ASP A 313 REMARK 465 PRO A 314 REMARK 465 ARG A 315 REMARK 465 LEU A 316 REMARK 465 PRO A 317 REMARK 465 ASP A 318 REMARK 465 ASN A 319 REMARK 465 PRO A 320 REMARK 465 ILE A 321 REMARK 465 ILE A 322 REMARK 465 PHE A 323 REMARK 465 ALA A 324 REMARK 465 SER A 325 REMARK 465 ASP A 326 REMARK 465 SER A 327 REMARK 465 PHE A 328 REMARK 465 LEU A 329 REMARK 465 GLN A 330 REMARK 465 LEU A 331 REMARK 465 THR A 332 REMARK 465 GLU A 333 REMARK 465 TYR A 334 REMARK 465 SER A 335 REMARK 465 ARG A 336 REMARK 465 GLU A 337 REMARK 465 GLU A 338 REMARK 465 ILE A 339 REMARK 465 LEU A 340 REMARK 465 GLY A 341 REMARK 465 ARG A 342 REMARK 465 ASN A 343 REMARK 465 CYS A 344 REMARK 465 ARG A 345 REMARK 465 PHE A 346 REMARK 465 LEU A 347 REMARK 465 GLN A 348 REMARK 465 GLY A 349 REMARK 465 PRO A 350 REMARK 465 GLU A 351 REMARK 465 THR A 352 REMARK 465 ASP A 353 REMARK 465 ARG A 354 REMARK 465 ALA A 355 REMARK 465 THR A 356 REMARK 465 VAL A 357 REMARK 465 ARG A 358 REMARK 465 LYS A 359 REMARK 465 ILE A 360 REMARK 465 ARG A 361 REMARK 465 ASP A 362 REMARK 465 ALA A 363 REMARK 465 ILE A 364 REMARK 465 ASP A 365 REMARK 465 ASN A 366 REMARK 465 GLN A 367 REMARK 465 THR A 368 REMARK 465 GLU A 369 REMARK 465 VAL A 370 REMARK 465 THR A 371 REMARK 465 VAL A 372 REMARK 465 GLN A 373 REMARK 465 LEU A 374 REMARK 465 ILE A 375 REMARK 465 ASN A 376 REMARK 465 TYR A 377 REMARK 465 THR A 378 REMARK 465 LYS A 379 REMARK 465 SER A 380 REMARK 465 GLY A 381 REMARK 465 LYS A 382 REMARK 465 LYS A 383 REMARK 465 PHE A 384 REMARK 465 TRP A 385 REMARK 465 ASN A 386 REMARK 465 LEU A 387 REMARK 465 PHE A 388 REMARK 465 HIS A 389 REMARK 465 LEU A 390 REMARK 465 GLN A 391 REMARK 465 PRO A 392 REMARK 465 MET A 393 REMARK 465 ARG A 394 REMARK 465 ASP A 395 REMARK 465 GLN A 396 REMARK 465 LYS A 397 REMARK 465 GLY A 398 REMARK 465 ASP A 399 REMARK 465 VAL A 400 REMARK 465 GLN A 401 REMARK 465 TYR A 402 REMARK 465 PHE A 403 REMARK 465 ILE A 404 REMARK 465 GLY A 405 REMARK 465 VAL A 406 REMARK 465 GLN A 407 REMARK 465 LEU A 408 REMARK 465 ASP A 409 REMARK 465 GLY A 410 REMARK 465 THR A 411 REMARK 465 GLU A 412 REMARK 465 HIS A 413 REMARK 465 VAL A 414 REMARK 465 ARG A 415 REMARK 465 ASP A 416 REMARK 465 ALA A 417 REMARK 465 ALA A 418 REMARK 465 GLU A 419 REMARK 465 ARG A 420 REMARK 465 GLU A 421 REMARK 465 GLY A 422 REMARK 465 VAL A 423 REMARK 465 MET A 424 REMARK 465 LEU A 425 REMARK 465 ILE A 426 REMARK 465 LYS A 427 REMARK 465 LYS A 428 REMARK 465 THR A 429 REMARK 465 ALA A 430 REMARK 465 GLU A 431 REMARK 465 ASN A 432 REMARK 465 ILE A 433 REMARK 465 ASP A 434 REMARK 465 GLU A 435 REMARK 465 ALA A 436 REMARK 465 ALA A 437 REMARK 465 LYS A 438 REMARK 465 GLU A 439 REMARK 465 LEU A 440 REMARK 465 LEU A 441 REMARK 465 GLU A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 693 O HOH A 781 2.02 REMARK 500 OG SER A 205 OE1 GLU A 207 2.03 REMARK 500 O HOH A 649 O HOH A 794 2.15 REMARK 500 O GLN A 61 O HOH A 601 2.15 REMARK 500 O HOH A 758 O HOH A 784 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 121 CB - CA - C ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 62 112.12 -39.43 REMARK 500 ASP A 63 -135.58 162.54 REMARK 500 CYS A 215 -140.92 -132.04 REMARK 500 ILE A 219 -35.74 -133.89 REMARK 500 ILE A 261 109.01 69.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 824 DISTANCE = 8.29 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 632 O REMARK 620 2 HOH A 689 O 96.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 DBREF 6NTP A 1 298 UNP P18031 PTN1_HUMAN 1 298 DBREF 6NTP A 301 440 UNP O49003 O49003_AVESA 407 546 SEQADV 6NTP ALA A 299 UNP P18031 LINKER SEQADV 6NTP ALA A 300 UNP P18031 LINKER SEQADV 6NTP LEU A 441 UNP O49003 EXPRESSION TAG SEQADV 6NTP GLU A 442 UNP O49003 EXPRESSION TAG SEQADV 6NTP HIS A 443 UNP O49003 EXPRESSION TAG SEQADV 6NTP HIS A 444 UNP O49003 EXPRESSION TAG SEQADV 6NTP HIS A 445 UNP O49003 EXPRESSION TAG SEQADV 6NTP HIS A 446 UNP O49003 EXPRESSION TAG SEQADV 6NTP HIS A 447 UNP O49003 EXPRESSION TAG SEQADV 6NTP HIS A 448 UNP O49003 EXPRESSION TAG SEQRES 1 A 448 MET GLU MET GLU LYS GLU PHE GLU GLN ILE ASP LYS SER SEQRES 2 A 448 GLY SER TRP ALA ALA ILE TYR GLN ASP ILE ARG HIS GLU SEQRES 3 A 448 ALA SER ASP PHE PRO CYS ARG VAL ALA LYS LEU PRO LYS SEQRES 4 A 448 ASN LYS ASN ARG ASN ARG TYR ARG ASP VAL SER PRO PHE SEQRES 5 A 448 ASP HIS SER ARG ILE LYS LEU HIS GLN GLU ASP ASN ASP SEQRES 6 A 448 TYR ILE ASN ALA SER LEU ILE LYS MET GLU GLU ALA GLN SEQRES 7 A 448 ARG SER TYR ILE LEU THR GLN GLY PRO LEU PRO ASN THR SEQRES 8 A 448 CYS GLY HIS PHE TRP GLU MET VAL TRP GLU GLN LYS SER SEQRES 9 A 448 ARG GLY VAL VAL MET LEU ASN ARG VAL MET GLU LYS GLY SEQRES 10 A 448 SER LEU LYS CYS ALA GLN TYR TRP PRO GLN LYS GLU GLU SEQRES 11 A 448 LYS GLU MET ILE PHE GLU ASP THR ASN LEU LYS LEU THR SEQRES 12 A 448 LEU ILE SER GLU ASP ILE LYS SER TYR TYR THR VAL ARG SEQRES 13 A 448 GLN LEU GLU LEU GLU ASN LEU THR THR GLN GLU THR ARG SEQRES 14 A 448 GLU ILE LEU HIS PHE HIS TYR THR THR TRP PRO ASP PHE SEQRES 15 A 448 GLY VAL PRO GLU SER PRO ALA SER PHE LEU ASN PHE LEU SEQRES 16 A 448 PHE LYS VAL ARG GLU SER GLY SER LEU SER PRO GLU HIS SEQRES 17 A 448 GLY PRO VAL VAL VAL HIS CYS SER ALA GLY ILE GLY ARG SEQRES 18 A 448 SER GLY THR PHE CYS LEU ALA ASP THR CYS LEU LEU LEU SEQRES 19 A 448 MET ASP LYS ARG LYS ASP PRO SER SER VAL ASP ILE LYS SEQRES 20 A 448 LYS VAL LEU LEU GLU MET ARG LYS PHE ARG MET GLY LEU SEQRES 21 A 448 ILE GLN THR ALA ASP GLN LEU ARG PHE SER TYR LEU ALA SEQRES 22 A 448 VAL ILE GLU GLY ALA LYS PHE ILE MET GLY ASP SER SER SEQRES 23 A 448 VAL GLN ASP GLN TRP LYS GLU LEU SER HIS GLU ASP ALA SEQRES 24 A 448 ALA THR LEU GLU ARG ILE GLU LYS ASN PHE VAL ILE THR SEQRES 25 A 448 ASP PRO ARG LEU PRO ASP ASN PRO ILE ILE PHE ALA SER SEQRES 26 A 448 ASP SER PHE LEU GLN LEU THR GLU TYR SER ARG GLU GLU SEQRES 27 A 448 ILE LEU GLY ARG ASN CYS ARG PHE LEU GLN GLY PRO GLU SEQRES 28 A 448 THR ASP ARG ALA THR VAL ARG LYS ILE ARG ASP ALA ILE SEQRES 29 A 448 ASP ASN GLN THR GLU VAL THR VAL GLN LEU ILE ASN TYR SEQRES 30 A 448 THR LYS SER GLY LYS LYS PHE TRP ASN LEU PHE HIS LEU SEQRES 31 A 448 GLN PRO MET ARG ASP GLN LYS GLY ASP VAL GLN TYR PHE SEQRES 32 A 448 ILE GLY VAL GLN LEU ASP GLY THR GLU HIS VAL ARG ASP SEQRES 33 A 448 ALA ALA GLU ARG GLU GLY VAL MET LEU ILE LYS LYS THR SEQRES 34 A 448 ALA GLU ASN ILE ASP GLU ALA ALA LYS GLU LEU LEU GLU SEQRES 35 A 448 HIS HIS HIS HIS HIS HIS HET MG A 501 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *224(H2 O) HELIX 1 AA1 GLU A 2 GLY A 14 1 13 HELIX 2 AA2 SER A 15 ALA A 27 1 13 HELIX 3 AA3 LEU A 37 ASN A 44 5 8 HELIX 4 AA4 THR A 91 LYS A 103 1 13 HELIX 5 AA5 PRO A 188 SER A 201 1 14 HELIX 6 AA6 GLY A 220 ARG A 238 1 19 HELIX 7 AA7 ASP A 240 VAL A 244 5 5 HELIX 8 AA8 ASP A 245 ARG A 254 1 10 HELIX 9 AA9 THR A 263 ILE A 281 1 19 SHEET 1 AA1 9 ARG A 56 LYS A 58 0 SHEET 2 AA1 9 TYR A 66 MET A 74 -1 O ALA A 69 N ILE A 57 SHEET 3 AA1 9 ARG A 79 THR A 84 -1 O TYR A 81 N ILE A 72 SHEET 4 AA1 9 VAL A 211 HIS A 214 1 O VAL A 213 N ILE A 82 SHEET 5 AA1 9 GLY A 106 MET A 109 1 N VAL A 108 O VAL A 212 SHEET 6 AA1 9 THR A 168 TYR A 176 1 O PHE A 174 N VAL A 107 SHEET 7 AA1 9 TYR A 153 ASN A 162 -1 N THR A 154 O HIS A 175 SHEET 8 AA1 9 LEU A 140 ILE A 149 -1 N LYS A 141 O GLU A 161 SHEET 9 AA1 9 MET A 133 PHE A 135 -1 N PHE A 135 O LEU A 140 SHEET 1 AA2 2 MET A 114 GLU A 115 0 SHEET 2 AA2 2 SER A 118 LEU A 119 -1 O SER A 118 N GLU A 115 LINK MG MG A 501 O HOH A 632 1555 1555 1.80 LINK MG MG A 501 O HOH A 689 1555 4455 2.07 SITE 1 AC1 2 HOH A 632 HOH A 689 CRYST1 89.254 89.254 105.747 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011204 0.006469 0.000000 0.00000 SCALE2 0.000000 0.012937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009457 0.00000