HEADER HYDROLASE 31-JAN-19 6NU8 TITLE STRUCTURE OF SUCROSE-6-PHOSPHATE HYDROLASE FROM LACTOBACILLUS GASSERI TITLE 2 IN COMPLEX WITH FRUCTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCROSE-6-PHOSPHATE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INVERTASE; COMPND 5 EC: 3.2.1.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS GASSERI 224-1; SOURCE 3 ORGANISM_TAXID: 679196; SOURCE 4 GENE: HMPREF9209_2365; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GH32, GLYCOSIDE HYDROLASE, LACTOBACILLUS GASSERI, HYDROLASE, FRUCTOSE EXPDTA X-RAY DIFFRACTION AUTHOR M.Z.T.LIMA,J.R.C.MUNIZ REVDAT 4 13-MAR-24 6NU8 1 HETSYN REVDAT 3 29-JUL-20 6NU8 1 COMPND REMARK HETNAM SITE REVDAT 2 12-FEB-20 6NU8 1 TITLE REVDAT 1 05-FEB-20 6NU8 0 JRNL AUTH M.Z.T.LIMA,J.R.C.MUNIZ JRNL TITL STRUCTURE OF SUCROSE-6-PHOSPHATE HYDROLASE FROM JRNL TITL 2 LACTOBACILLUS GASSERI IN COMPLEX WITH FRUCTOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 49110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2643 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3198 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.2250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3905 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 497 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4092 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3517 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5591 ; 1.816 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8216 ; 1.552 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 507 ; 7.786 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;37.104 ;24.103 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;12.292 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.461 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 519 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4691 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 854 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1971 ; 0.985 ; 1.026 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1970 ; 0.985 ; 1.026 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2467 ; 1.586 ; 1.533 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2468 ; 1.586 ; 1.534 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2121 ; 1.929 ; 1.241 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2122 ; 1.928 ; 1.242 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3115 ; 3.043 ; 1.781 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4653 ; 4.898 ;13.349 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4524 ; 4.684 ;12.621 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 9 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 28 REMARK 3 RESIDUE RANGE : A 29 A 141 REMARK 3 RESIDUE RANGE : A 142 A 175 REMARK 3 RESIDUE RANGE : A 176 A 198 REMARK 3 RESIDUE RANGE : A 199 A 272 REMARK 3 RESIDUE RANGE : A 273 A 340 REMARK 3 RESIDUE RANGE : A 341 A 366 REMARK 3 RESIDUE RANGE : A 367 A 460 REMARK 3 RESIDUE RANGE : A 461 A 489 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0810 -12.2550 21.6340 REMARK 3 T TENSOR REMARK 3 T11: 0.0162 T22: 0.0085 REMARK 3 T33: 0.0025 T12: 0.0074 REMARK 3 T13: -0.0049 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.1424 L22: 0.0997 REMARK 3 L33: 0.1089 L12: -0.0234 REMARK 3 L13: 0.0187 L23: -0.0482 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: 0.0035 S13: -0.0053 REMARK 3 S21: 0.0104 S22: 0.0155 S23: -0.0002 REMARK 3 S31: 0.0050 S32: 0.0086 S33: -0.0101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6NU8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239446. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51784 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 41.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 18.00 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.27200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BUFFER MMT PH 9.0; 25% (M/V) PEG REMARK 280 1500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.93000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.93000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.93000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.93000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.93000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.93000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 802 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 962 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1071 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1096 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 LYS A 214 CD CE NZ REMARK 470 LYS A 366 CD CE NZ REMARK 470 LYS A 477 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 995 O HOH A 1056 2.13 REMARK 500 O HOH A 911 O HOH A 1088 2.15 REMARK 500 O HOH A 970 O HOH A 1060 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 57 CD GLU A 57 OE1 0.096 REMARK 500 GLU A 143 CD GLU A 143 OE1 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 -145.57 -137.35 REMARK 500 ASP A 47 129.27 -32.56 REMARK 500 PRO A 69 40.25 -88.19 REMARK 500 VAL A 85 -52.28 -130.66 REMARK 500 SER A 162 -165.05 -79.07 REMARK 500 PHE A 165 91.76 -168.18 REMARK 500 ASP A 167 54.88 76.05 REMARK 500 MET A 217 69.12 -102.25 REMARK 500 ASN A 231 0.70 80.45 REMARK 500 ASN A 321 178.69 78.86 REMARK 500 LYS A 363 99.20 -163.68 REMARK 500 ALA A 401 -130.91 -105.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 6NU8 A 1 489 UNP D1YK18 D1YK18_LACGS 1 489 SEQRES 1 A 489 MET GLU TRP THR ARG GLU GLN ARG TYR ARG LYS TYR LYS SEQRES 2 A 489 ASP TRP ASP ALA GLN THR LEU LEU ASP LEU GLN ALA GLN SEQRES 3 A 489 ALA ALA THR SER PRO TYR GLN MET HIS TYR HIS ILE HIS SEQRES 4 A 489 PRO LEU SER GLY LEU LEU ASN ASP PRO ASN GLY PHE SER SEQRES 5 A 489 TYR TYR ASN GLY GLU TYR HIS LEU PHE CYS GLN SER TYR SEQRES 6 A 489 PRO PHE GLY PRO VAL HIS GLY VAL LYS SER TRP ILE HIS SEQRES 7 A 489 PHE ALA SER PRO ASP LEU VAL HIS TRP HIS TYR LEU GLY SEQRES 8 A 489 PRO ALA ILE ASP PRO ASP SER ASP LEU ASP ASN ALA GLY SEQRES 9 A 489 ALA TYR SER GLY SER ALA MET GLU HIS ASN GLY LYS LEU SEQRES 10 A 489 LEU LEU MET TYR THR GLY ASN HIS ARG ASP GLU ASP TRP SEQRES 11 A 489 THR ARG ILE PRO TYR GLN VAL ILE ALA GLU MET ASP GLU SEQRES 12 A 489 ASN ASN HIS ILE THR LYS PRO ASP ALA ALA ALA ILE LEU SEQRES 13 A 489 PRO PRO GLU HIS VAL SER GLU HIS PHE ARG ASP PRO GLN SEQRES 14 A 489 LEU PHE LYS HIS ASP GLY LYS TYR TYR VAL LEU LEU GLY SEQRES 15 A 489 ALA GLN ASP ALA GLU THR LYS SER GLY HIS ILE ASP ILE SEQRES 16 A 489 TYR GLU SER ASP ASP LEU LYS THR TRP HIS GLU ASN GLY SEQRES 17 A 489 TYR LEU ASP LEU GLY LYS ASP GLU MET GLY TYR MET ILE SEQRES 18 A 489 GLU CYS PRO ASN LEU VAL PHE VAL ASN ASN TYR PRO VAL SEQRES 19 A 489 LEU ILE PHE CYS PRO GLN GLY LEU ASP LYS ALA ILE SER SEQRES 20 A 489 ASP TYR GLN ASN ILE TYR PRO ASN MET TYR TRP ILE GLY SEQRES 21 A 489 LYS ASP ILE ASN LEU ASN GLU ALA LYS PHE THR PRO LEU SEQRES 22 A 489 GLN SER HIS PRO ALA ASN LEU ASP ASP GLY PHE ASP VAL SEQRES 23 A 489 TYR ALA THR GLN ALA PHE ASN ALA PRO ASP GLY ASN ALA SEQRES 24 A 489 TYR ALA ILE SER TRP VAL GLY LEU PRO ASP CYS THR TYR SEQRES 25 A 489 PRO THR ASP LYS GLU ASN TRP ALA ASN CYS TYR SER GLN SEQRES 26 A 489 VAL LYS ARG LEU GLU ILE LYS ASP GLY ALA LEU TYR GLN SEQRES 27 A 489 HIS PRO VAL ASP ALA ILE LYS ASN LEU ARG HIS ASN GLU SEQRES 28 A 489 THR GLN LEU ASN ASP GLU LYS ILE ILE SER GLN LYS ALA SEQRES 29 A 489 GLY LYS GLN TYR GLU LEU LYS LEU TYR LEU ALA ALA GLY SEQRES 30 A 489 GLN ALA GLY LYS LEU HIS LEU ALA SER ASN ASP ASP LEU SEQRES 31 A 489 SER ALA SER LEU VAL ILE ASP PHE ASN THR ALA GLN ASP SEQRES 32 A 489 ALA LYS LEU THR ILE ASP ARG ALA SER SER GLY PRO ALA SEQRES 33 A 489 VAL ASN PRO ASP TYR GLY ALA THR ARG THR ILE GLY LEU SEQRES 34 A 489 ASN ASP ASN GLU ASP LEU ASP LEU ASP ILE PHE VAL ASP SEQRES 35 A 489 GLY SER LEU CYS GLU ILE PHE ILE ASN ASP GLY ARG HIS SEQRES 36 A 489 VAL ALA THR LEU ARG PHE PHE ALA ARG SER SER ASN GLN SEQRES 37 A 489 LYS ILE ALA PHE ASP LYS ASP THR LYS TYR THR GLY ARG SEQRES 38 A 489 LEU TRP SER MET ASN SER ILE LEU HET FRU A 501 12 HET EDO A 502 4 HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 FRU C6 H12 O6 FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *497(H2 O) HELIX 1 AA1 THR A 4 ARG A 10 1 7 HELIX 2 AA2 LYS A 11 TRP A 15 5 5 HELIX 3 AA3 ASP A 16 THR A 29 1 14 HELIX 4 AA4 SER A 98 ASN A 102 5 5 HELIX 5 AA5 TYR A 312 GLU A 317 5 6 HELIX 6 AA6 ASP A 342 ASN A 346 5 5 HELIX 7 AA7 ASN A 418 GLY A 422 5 5 SHEET 1 AA1 5 HIS A 88 ILE A 94 0 SHEET 2 AA1 5 SER A 75 SER A 81 -1 N HIS A 78 O LEU A 90 SHEET 3 AA1 5 GLU A 57 TYR A 65 -1 N LEU A 60 O PHE A 79 SHEET 4 AA1 5 GLY A 43 TYR A 54 -1 N ASN A 49 O PHE A 61 SHEET 5 AA1 5 TRP A 319 ALA A 320 1 O ALA A 320 N GLY A 43 SHEET 1 AA2 4 ALA A 105 HIS A 113 0 SHEET 2 AA2 4 LYS A 116 ARG A 126 -1 O LEU A 118 N MET A 111 SHEET 3 AA2 4 ARG A 132 MET A 141 -1 O ALA A 139 N LEU A 119 SHEET 4 AA2 4 ILE A 147 THR A 148 -1 O THR A 148 N GLU A 140 SHEET 1 AA3 4 VAL A 161 HIS A 173 0 SHEET 2 AA3 4 LYS A 176 ASP A 185 -1 O TYR A 178 N PHE A 171 SHEET 3 AA3 4 GLY A 191 SER A 198 -1 O ASP A 194 N LEU A 181 SHEET 4 AA3 4 HIS A 205 TYR A 209 -1 O HIS A 205 N GLU A 197 SHEET 1 AA4 4 MET A 220 VAL A 229 0 SHEET 2 AA4 4 TYR A 232 GLN A 240 -1 O VAL A 234 N VAL A 227 SHEET 3 AA4 4 MET A 256 ASN A 264 -1 O GLY A 260 N PRO A 233 SHEET 4 AA4 4 LYS A 269 PRO A 272 -1 O THR A 271 N LYS A 261 SHEET 1 AA5 4 MET A 220 VAL A 229 0 SHEET 2 AA5 4 TYR A 232 GLN A 240 -1 O VAL A 234 N VAL A 227 SHEET 3 AA5 4 MET A 256 ASN A 264 -1 O GLY A 260 N PRO A 233 SHEET 4 AA5 4 ALA A 278 ASN A 279 -1 O ALA A 278 N TYR A 257 SHEET 1 AA6 3 VAL A 286 ASN A 293 0 SHEET 2 AA6 3 ALA A 299 VAL A 305 -1 O ILE A 302 N GLN A 290 SHEET 3 AA6 3 CYS A 322 TYR A 323 -1 O CYS A 322 N VAL A 305 SHEET 1 AA7 4 VAL A 286 ASN A 293 0 SHEET 2 AA7 4 ALA A 299 VAL A 305 -1 O ILE A 302 N GLN A 290 SHEET 3 AA7 4 LYS A 327 LYS A 332 -1 O LYS A 327 N ALA A 301 SHEET 4 AA7 4 ALA A 335 PRO A 340 -1 O TYR A 337 N GLU A 330 SHEET 1 AA8 6 ARG A 348 ASN A 355 0 SHEET 2 AA8 6 TYR A 478 MET A 485 -1 O GLY A 480 N LEU A 354 SHEET 3 AA8 6 GLN A 367 LEU A 374 -1 N TYR A 373 O THR A 479 SHEET 4 AA8 6 LEU A 435 ASP A 442 -1 O LEU A 435 N LEU A 374 SHEET 5 AA8 6 LEU A 445 ILE A 450 -1 O PHE A 449 N ASP A 438 SHEET 6 AA8 6 HIS A 455 ARG A 460 -1 O HIS A 455 N ILE A 450 SHEET 1 AA9 6 ILE A 359 SER A 361 0 SHEET 2 AA9 6 LYS A 469 PHE A 472 -1 O ILE A 470 N SER A 361 SHEET 3 AA9 6 ALA A 379 SER A 386 -1 N HIS A 383 O ALA A 471 SHEET 4 AA9 6 LEU A 394 ASN A 399 -1 O ILE A 396 N LEU A 382 SHEET 5 AA9 6 LYS A 405 ASP A 409 -1 O THR A 407 N ASP A 397 SHEET 6 AA9 6 THR A 424 GLY A 428 -1 O ILE A 427 N LEU A 406 CRYST1 103.860 103.860 102.000 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009628 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009804 0.00000