HEADER IMMUNE SYSTEM 03-FEB-19 6NV0 OBSLTE 29-JUN-22 6NV0 7UEM TITLE STRUCTURAL BASIS FOR ANTI-ALPHA-GALACTOSYL RESPONSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY FAB ARM LIGHT CHAIN; COMPND 3 CHAIN: C, L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY FAB ARM HEAVY CHAIN; COMPND 7 CHAIN: D, H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: EXPI293; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: EXPI293 KEYWDS ALPHA-GALACTOSYL, ANTIBODY, ANTI-ALPHA-GAL, IMMUNE RESPONSE, M86, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.B.LANGLEY,D.CHRIST REVDAT 3 29-JUN-22 6NV0 1 OBSLTE REVDAT 2 08-DEC-21 6NV0 1 COMPND REMARK DBREF SEQRES REVDAT 2 2 1 HELIX SHEET SSBOND LINK REVDAT 2 3 1 ATOM REVDAT 1 05-AUG-20 6NV0 0 JRNL AUTH D.B.LANGLEY,D.CHRIST JRNL TITL GENETIC AND STRUCTURAL BASIS FOR THE HUMAN JRNL TITL 2 ANTI-ALPHA-GALACTOSYL RESPONSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 35292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1810 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2408 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.89000 REMARK 3 B22 (A**2) : -2.01000 REMARK 3 B33 (A**2) : -1.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.426 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.267 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6778 ; 0.017 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6029 ; 0.036 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9229 ; 1.847 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14056 ; 2.495 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 865 ; 7.257 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;31.615 ;22.353 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1046 ;14.567 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;19.638 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 891 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7605 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1396 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6NV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37371 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 43.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 6NUY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY COMBINING EQUAL REMARK 280 COLUMES OF PROTEIN SOLUTION AND WELL SOLUTION COMPRISING 1M REMARK 280 LICL2, 100 MM CITRATE (PH 4.0) AND 20% PEG6000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.46850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.96550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.46850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.96550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 217 REMARK 465 GLU C 218 REMARK 465 CYS C 219 REMARK 465 LYS D 219 REMARK 465 SER D 220 REMARK 465 CYS D 221 REMARK 465 GLY D 222 REMARK 465 SER D 223 REMARK 465 HIS D 224 REMARK 465 HIS D 225 REMARK 465 HIS D 226 REMARK 465 HIS D 227 REMARK 465 HIS D 228 REMARK 465 HIS D 229 REMARK 465 SER H 220 REMARK 465 CYS H 221 REMARK 465 GLY H 222 REMARK 465 SER H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 GLY L 217 REMARK 465 GLU L 218 REMARK 465 CYS L 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP C 75 CG OD1 OD2 REMARK 470 GLU C 148 CG CD OE1 OE2 REMARK 470 GLU D 1 CG CD OE1 OE2 REMARK 470 ARG D 30 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 76 CG CD CE NZ REMARK 470 GLU H 1 CG CD OE1 OE2 REMARK 470 LYS H 219 CG CD CE NZ REMARK 470 GLN L 105 CG CD OE1 NE2 REMARK 470 GLU L 148 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 7 -61.37 -92.28 REMARK 500 VAL C 56 -43.40 70.17 REMARK 500 SER C 57 -4.41 -142.47 REMARK 500 SER C 208 168.99 175.23 REMARK 500 VAL D 48 -61.30 -120.15 REMARK 500 GLU D 101 121.08 176.73 REMARK 500 ASP D 149 68.00 63.11 REMARK 500 VAL H 48 -60.05 -120.58 REMARK 500 GLU H 101 123.10 174.71 REMARK 500 ASP H 149 68.16 65.16 REMARK 500 VAL L 56 -43.71 69.03 REMARK 500 SER L 57 -2.55 -141.67 REMARK 500 SER L 208 167.93 172.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 6 SER C 7 -149.21 REMARK 500 HIS C 98 GLY C 99 149.38 REMARK 500 GLN L 6 SER L 7 -147.90 REMARK 500 REMARK 500 REMARK: NULL DBREF 6NV0 C 1 219 PDB 6NV0 6NV0 1 219 DBREF 6NV0 D 1 229 PDB 6NV0 6NV0 1 229 DBREF 6NV0 H 1 229 PDB 6NV0 6NV0 1 229 DBREF 6NV0 L 1 219 PDB 6NV0 6NV0 1 219 SEQRES 1 C 219 ASP VAL VAL MET THR GLN SER PRO LEU SER LEU PRO VAL SEQRES 2 C 219 THR LEU GLY GLN PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 C 219 GLN SER LEU VAL TYR SER ASP GLY ASN THR TYR LEU ALA SEQRES 4 C 219 TRP PHE GLN GLN ARG PRO GLY GLN SER PRO ARG ARG LEU SEQRES 5 C 219 ILE TYR ARG VAL SER ASN ARG ASP SER GLY VAL PRO ASP SEQRES 6 C 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 C 219 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 C 219 TYR CYS LEU GLN GLY THR HIS GLY PRO HIS THR PHE GLY SEQRES 9 C 219 GLN GLY THR ASN LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 C 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 C 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 C 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 C 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 C 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 C 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 C 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 C 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 D 229 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 229 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 229 PHE ILE PHE ARG ASP SER TRP MET THR TRP VAL ARG GLN SEQRES 4 D 229 ALA PRO GLY LYS GLY PRO GLU TRP VAL ALA ASP ILE ASN SEQRES 5 D 229 GLN GLY GLY SER HIS LYS TYR TYR VAL ASP SER VAL LYS SEQRES 6 D 229 GLY ARG PHE THR ILE SER ARG ASP ASP ALA LYS ASN SER SEQRES 7 D 229 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 D 229 ALA VAL TYR TYR CYS ALA ARG ASP PRO GLU PHE GLY ALA SEQRES 9 D 229 LEU ASP TYR TRP GLY GLN GLY ALA LEU VAL THR VAL SER SEQRES 10 D 229 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 D 229 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 D 229 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 D 229 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 D 229 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 D 229 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 D 229 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 D 229 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 18 D 229 GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 H 229 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 229 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 229 PHE ILE PHE ARG ASP SER TRP MET THR TRP VAL ARG GLN SEQRES 4 H 229 ALA PRO GLY LYS GLY PRO GLU TRP VAL ALA ASP ILE ASN SEQRES 5 H 229 GLN GLY GLY SER HIS LYS TYR TYR VAL ASP SER VAL LYS SEQRES 6 H 229 GLY ARG PHE THR ILE SER ARG ASP ASP ALA LYS ASN SER SEQRES 7 H 229 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 229 ALA VAL TYR TYR CYS ALA ARG ASP PRO GLU PHE GLY ALA SEQRES 9 H 229 LEU ASP TYR TRP GLY GLN GLY ALA LEU VAL THR VAL SER SEQRES 10 H 229 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 229 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 229 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 229 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 229 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 229 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 229 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 229 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 18 H 229 GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 L 219 ASP VAL VAL MET THR GLN SER PRO LEU SER LEU PRO VAL SEQRES 2 L 219 THR LEU GLY GLN PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER LEU VAL TYR SER ASP GLY ASN THR TYR LEU ALA SEQRES 4 L 219 TRP PHE GLN GLN ARG PRO GLY GLN SER PRO ARG ARG LEU SEQRES 5 L 219 ILE TYR ARG VAL SER ASN ARG ASP SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 219 TYR CYS LEU GLN GLY THR HIS GLY PRO HIS THR PHE GLY SEQRES 9 L 219 GLN GLY THR ASN LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET GAL A 1 12 HET GLA A 2 11 HET GAL B 1 12 HET GLA B 2 11 HET CL C 301 1 HET CL D 301 1 HET CL D 302 1 HET CL L 301 1 HET CL L 302 1 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM CL CHLORIDE ION HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE FORMUL 5 GAL 2(C6 H12 O6) FORMUL 5 GLA 2(C6 H12 O6) FORMUL 7 CL 5(CL 1-) FORMUL 12 HOH *107(H2 O) HELIX 1 AA1 GLU C 84 VAL C 88 5 5 HELIX 2 AA2 SER C 126 LYS C 131 1 6 HELIX 3 AA3 LYS C 188 LYS C 193 1 6 HELIX 4 AA4 ILE D 28 SER D 32 5 5 HELIX 5 AA5 ASP D 62 LYS D 65 5 4 HELIX 6 AA6 ASP D 74 LYS D 76 5 3 HELIX 7 AA7 ARG D 87 THR D 91 5 5 HELIX 8 AA8 SER D 132 LYS D 134 5 3 HELIX 9 AA9 SER D 161 ALA D 163 5 3 HELIX 10 AB1 SER D 192 LEU D 194 5 3 HELIX 11 AB2 LYS D 206 ASN D 209 5 4 HELIX 12 AB3 ILE H 28 SER H 32 5 5 HELIX 13 AB4 ASP H 62 LYS H 65 5 4 HELIX 14 AB5 ASP H 74 LYS H 76 5 3 HELIX 15 AB6 ARG H 87 THR H 91 5 5 HELIX 16 AB7 SER H 132 LYS H 134 5 3 HELIX 17 AB8 SER H 161 ALA H 163 5 3 HELIX 18 AB9 SER H 192 LEU H 194 5 3 HELIX 19 AC1 LYS H 206 ASN H 209 5 4 HELIX 20 AC2 GLU L 84 VAL L 88 5 5 HELIX 21 AC3 SER L 126 LYS L 131 1 6 HELIX 22 AC4 LYS L 188 LYS L 193 1 6 SHEET 1 AA1 4 MET C 4 GLN C 6 0 SHEET 2 AA1 4 ALA C 19 SER C 25 -1 O ARG C 24 N THR C 5 SHEET 3 AA1 4 ASP C 75 ILE C 80 -1 O PHE C 76 N CYS C 23 SHEET 4 AA1 4 PHE C 67 SER C 72 -1 N SER C 68 O LYS C 79 SHEET 1 AA2 6 SER C 10 THR C 14 0 SHEET 2 AA2 6 THR C 107 LYS C 112 1 O ASN C 108 N LEU C 11 SHEET 3 AA2 6 GLY C 89 GLN C 95 -1 N GLY C 89 O LEU C 109 SHEET 4 AA2 6 LEU C 38 GLN C 43 -1 N GLN C 43 O VAL C 90 SHEET 5 AA2 6 ARG C 50 TYR C 54 -1 O ARG C 50 N GLN C 42 SHEET 6 AA2 6 ASN C 58 ARG C 59 -1 O ASN C 58 N TYR C 54 SHEET 1 AA3 4 SER C 10 THR C 14 0 SHEET 2 AA3 4 THR C 107 LYS C 112 1 O ASN C 108 N LEU C 11 SHEET 3 AA3 4 GLY C 89 GLN C 95 -1 N GLY C 89 O LEU C 109 SHEET 4 AA3 4 THR C 102 PHE C 103 -1 O THR C 102 N GLN C 95 SHEET 1 AA4 4 SER C 119 PHE C 123 0 SHEET 2 AA4 4 THR C 134 PHE C 144 -1 O LEU C 140 N PHE C 121 SHEET 3 AA4 4 TYR C 178 SER C 187 -1 O LEU C 180 N LEU C 141 SHEET 4 AA4 4 SER C 164 VAL C 168 -1 N SER C 167 O SER C 181 SHEET 1 AA5 4 ALA C 158 LEU C 159 0 SHEET 2 AA5 4 LYS C 150 VAL C 155 -1 N VAL C 155 O ALA C 158 SHEET 3 AA5 4 VAL C 196 THR C 202 -1 O GLU C 200 N GLN C 152 SHEET 4 AA5 4 VAL C 210 ASN C 215 -1 O VAL C 210 N VAL C 201 SHEET 1 AA6 4 GLN D 3 SER D 7 0 SHEET 2 AA6 4 LEU D 18 SER D 25 -1 O ALA D 23 N VAL D 5 SHEET 3 AA6 4 SER D 78 MET D 83 -1 O LEU D 81 N LEU D 20 SHEET 4 AA6 4 PHE D 68 ASP D 73 -1 N THR D 69 O GLN D 82 SHEET 1 AA7 6 GLY D 10 VAL D 12 0 SHEET 2 AA7 6 ALA D 112 VAL D 116 1 O THR D 115 N GLY D 10 SHEET 3 AA7 6 ALA D 92 ASP D 99 -1 N TYR D 94 O ALA D 112 SHEET 4 AA7 6 TRP D 33 GLN D 39 -1 N VAL D 37 O TYR D 95 SHEET 5 AA7 6 PRO D 45 ILE D 51 -1 O ALA D 49 N TRP D 36 SHEET 6 AA7 6 LYS D 58 TYR D 60 -1 O TYR D 59 N ASP D 50 SHEET 1 AA8 4 GLY D 10 VAL D 12 0 SHEET 2 AA8 4 ALA D 112 VAL D 116 1 O THR D 115 N GLY D 10 SHEET 3 AA8 4 ALA D 92 ASP D 99 -1 N TYR D 94 O ALA D 112 SHEET 4 AA8 4 TYR D 107 TRP D 108 -1 O TYR D 107 N ARG D 98 SHEET 1 AA9 4 SER D 125 LEU D 129 0 SHEET 2 AA9 4 THR D 140 TYR D 150 -1 O LEU D 146 N PHE D 127 SHEET 3 AA9 4 TYR D 181 PRO D 190 -1 O VAL D 189 N ALA D 141 SHEET 4 AA9 4 VAL D 168 THR D 170 -1 N HIS D 169 O VAL D 186 SHEET 1 AB1 4 THR D 136 SER D 137 0 SHEET 2 AB1 4 THR D 140 TYR D 150 -1 O THR D 140 N SER D 137 SHEET 3 AB1 4 TYR D 181 PRO D 190 -1 O VAL D 189 N ALA D 141 SHEET 4 AB1 4 VAL D 174 LEU D 175 -1 N VAL D 174 O SER D 182 SHEET 1 AB2 3 THR D 156 TRP D 159 0 SHEET 2 AB2 3 ILE D 200 HIS D 205 -1 O ASN D 202 N SER D 158 SHEET 3 AB2 3 THR D 210 LYS D 215 -1 O THR D 210 N HIS D 205 SHEET 1 AB3 4 GLN H 3 SER H 7 0 SHEET 2 AB3 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AB3 4 SER H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AB3 4 PHE H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 AB4 6 GLY H 10 VAL H 12 0 SHEET 2 AB4 6 ALA H 112 VAL H 116 1 O THR H 115 N GLY H 10 SHEET 3 AB4 6 ALA H 92 ASP H 99 -1 N TYR H 94 O ALA H 112 SHEET 4 AB4 6 TRP H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AB4 6 PRO H 45 ILE H 51 -1 O ALA H 49 N TRP H 36 SHEET 6 AB4 6 LYS H 58 TYR H 60 -1 O TYR H 59 N ASP H 50 SHEET 1 AB5 4 GLY H 10 VAL H 12 0 SHEET 2 AB5 4 ALA H 112 VAL H 116 1 O THR H 115 N GLY H 10 SHEET 3 AB5 4 ALA H 92 ASP H 99 -1 N TYR H 94 O ALA H 112 SHEET 4 AB5 4 TYR H 107 TRP H 108 -1 O TYR H 107 N ARG H 98 SHEET 1 AB6 4 SER H 125 LEU H 129 0 SHEET 2 AB6 4 THR H 140 TYR H 150 -1 O LEU H 146 N PHE H 127 SHEET 3 AB6 4 TYR H 181 PRO H 190 -1 O VAL H 189 N ALA H 141 SHEET 4 AB6 4 VAL H 168 THR H 170 -1 N HIS H 169 O VAL H 186 SHEET 1 AB7 4 THR H 136 SER H 137 0 SHEET 2 AB7 4 THR H 140 TYR H 150 -1 O THR H 140 N SER H 137 SHEET 3 AB7 4 TYR H 181 PRO H 190 -1 O VAL H 189 N ALA H 141 SHEET 4 AB7 4 VAL H 174 LEU H 175 -1 N VAL H 174 O SER H 182 SHEET 1 AB8 3 THR H 156 TRP H 159 0 SHEET 2 AB8 3 ILE H 200 HIS H 205 -1 O ASN H 202 N SER H 158 SHEET 3 AB8 3 THR H 210 LYS H 215 -1 O THR H 210 N HIS H 205 SHEET 1 AB9 4 MET L 4 GLN L 6 0 SHEET 2 AB9 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB9 4 ASP L 75 ILE L 80 -1 O PHE L 76 N CYS L 23 SHEET 4 AB9 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 AC1 6 SER L 10 THR L 14 0 SHEET 2 AC1 6 THR L 107 LYS L 112 1 O ASN L 108 N LEU L 11 SHEET 3 AC1 6 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 AC1 6 LEU L 38 GLN L 43 -1 N PHE L 41 O TYR L 92 SHEET 5 AC1 6 ARG L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 AC1 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AC2 4 SER L 10 THR L 14 0 SHEET 2 AC2 4 THR L 107 LYS L 112 1 O ASN L 108 N LEU L 11 SHEET 3 AC2 4 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 AC2 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AC3 4 SER L 119 PHE L 123 0 SHEET 2 AC3 4 THR L 134 PHE L 144 -1 O ASN L 142 N SER L 119 SHEET 3 AC3 4 TYR L 178 SER L 187 -1 O LEU L 186 N ALA L 135 SHEET 4 AC3 4 SER L 164 VAL L 168 -1 N SER L 167 O SER L 181 SHEET 1 AC4 4 ALA L 158 LEU L 159 0 SHEET 2 AC4 4 LYS L 150 VAL L 155 -1 N VAL L 155 O ALA L 158 SHEET 3 AC4 4 VAL L 196 THR L 202 -1 O GLU L 200 N GLN L 152 SHEET 4 AC4 4 VAL L 210 ASN L 215 -1 O VAL L 210 N VAL L 201 SSBOND 1 CYS C 23 CYS C 93 1555 1555 2.11 SSBOND 2 CYS C 139 CYS C 199 1555 1555 2.03 SSBOND 3 CYS D 22 CYS D 96 1555 1555 2.06 SSBOND 4 CYS D 145 CYS D 201 1555 1555 2.03 SSBOND 5 CYS H 22 CYS H 96 1555 1555 2.08 SSBOND 6 CYS H 145 CYS H 201 1555 1555 2.05 SSBOND 7 CYS L 23 CYS L 93 1555 1555 2.10 SSBOND 8 CYS L 139 CYS L 199 1555 1555 2.04 LINK O3 GAL A 1 C1 GLA A 2 1555 1555 1.35 LINK O3 GAL B 1 C1 GLA B 2 1555 1555 1.35 CISPEP 1 TYR C 145 PRO C 146 0 1.65 CISPEP 2 PHE D 151 PRO D 152 0 -4.30 CISPEP 3 GLU D 153 PRO D 154 0 0.06 CISPEP 4 PHE H 151 PRO H 152 0 -4.46 CISPEP 5 GLU H 153 PRO H 154 0 -3.79 CISPEP 6 TYR L 145 PRO L 146 0 2.69 CRYST1 86.937 65.931 151.513 90.00 90.91 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011503 0.000000 0.000182 0.00000 SCALE2 0.000000 0.015167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006601 0.00000