HEADER DNA BINDING PROTEIN 05-FEB-19 6NVP TITLE CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA NUCLEASE MPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE MPE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA (STRAIN ATCC 47054 / DSM SOURCE 3 6125 / NCIMB 11950 / KT2440); SOURCE 4 ORGANISM_TAXID: 160488; SOURCE 5 STRAIN: ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440; SOURCE 6 GENE: PP_1102; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS BINUCLEAR METALLO-PHOSPHODIESTERASE/NUCLEASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.GOLDGUR,S.SHUMAN,A.EJAZ REVDAT 5 13-MAR-24 6NVP 1 LINK REVDAT 4 18-DEC-19 6NVP 1 REMARK REVDAT 3 29-MAY-19 6NVP 1 JRNL REVDAT 2 17-APR-19 6NVP 1 JRNL REVDAT 1 27-MAR-19 6NVP 0 JRNL AUTH A.EJAZ,Y.GOLDGUR,S.SHUMAN JRNL TITL ACTIVITY AND STRUCTURE OFPSEUDOMONAS PUTIDAMPE, A JRNL TITL 2 MANGANESE-DEPENDENT SINGLE-STRAND DNA ENDONUCLEASE ENCODED JRNL TITL 3 IN A NUCLEIC ACID REPAIR GENE CLUSTER. JRNL REF J.BIOL.CHEM. V. 294 7931 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30894417 JRNL DOI 10.1074/JBC.RA119.008049 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3211: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 14109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2394 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3199 - 5.1392 0.98 1285 140 0.2037 0.2384 REMARK 3 2 5.1392 - 4.0805 0.98 1274 145 0.1524 0.1934 REMARK 3 3 4.0805 - 3.5651 0.99 1304 146 0.1829 0.2388 REMARK 3 4 3.5651 - 3.2393 1.00 1288 145 0.1821 0.2389 REMARK 3 5 3.2393 - 3.0072 0.99 1304 144 0.1971 0.2879 REMARK 3 6 3.0072 - 2.8300 0.97 1263 144 0.1992 0.2283 REMARK 3 7 2.8300 - 2.6883 0.99 1322 139 0.2011 0.2590 REMARK 3 8 2.6883 - 2.5713 0.99 1321 147 0.1898 0.2324 REMARK 3 9 2.5713 - 2.4723 0.99 1296 150 0.1833 0.2272 REMARK 3 10 2.4723 - 2.3870 0.98 1237 132 0.2002 0.2190 REMARK 3 11 2.3870 - 2.3124 0.98 1303 151 0.1979 0.2687 REMARK 3 12 2.3124 - 2.2463 0.98 1267 139 0.2141 0.2543 REMARK 3 13 2.2463 - 2.1872 0.99 1310 140 0.2209 0.3261 REMARK 3 14 2.1872 - 2.1338 0.98 1292 143 0.2273 0.3203 REMARK 3 15 2.1338 - 2.0853 0.95 1252 136 0.2651 0.3515 REMARK 3 16 2.0853 - 2.0409 0.89 1132 135 0.2837 0.2895 REMARK 3 17 2.0409 - 2.0001 0.78 1014 118 0.3162 0.3814 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1609 REMARK 3 ANGLE : 0.823 2197 REMARK 3 CHIRALITY : 0.055 245 REMARK 3 PLANARITY : 0.006 284 REMARK 3 DIHEDRAL : 3.482 953 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2971 13.4566 168.7535 REMARK 3 T TENSOR REMARK 3 T11: 0.4097 T22: 0.4569 REMARK 3 T33: 0.3926 T12: 0.0420 REMARK 3 T13: -0.0845 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 3.0484 L22: 4.4510 REMARK 3 L33: 4.3307 L12: -0.2149 REMARK 3 L13: -0.5427 L23: 1.1164 REMARK 3 S TENSOR REMARK 3 S11: 0.1434 S12: 0.3775 S13: 0.0114 REMARK 3 S21: -0.8469 S22: -0.0659 S23: 0.4226 REMARK 3 S31: -0.2412 S32: -1.1918 S33: -0.0718 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1397 24.0918 170.5785 REMARK 3 T TENSOR REMARK 3 T11: 0.6718 T22: 0.3345 REMARK 3 T33: 0.4314 T12: -0.0216 REMARK 3 T13: 0.0941 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.6638 L22: 3.3447 REMARK 3 L33: 3.1097 L12: -0.2572 REMARK 3 L13: 0.2373 L23: 0.3512 REMARK 3 S TENSOR REMARK 3 S11: 0.0945 S12: 0.2938 S13: 0.2228 REMARK 3 S21: -0.6549 S22: 0.1121 S23: -0.3483 REMARK 3 S31: -0.7725 S32: 0.1281 S33: -0.1623 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9091 18.8184 182.3230 REMARK 3 T TENSOR REMARK 3 T11: 0.3792 T22: 0.3802 REMARK 3 T33: 0.3242 T12: 0.0530 REMARK 3 T13: 0.0109 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.6620 L22: 2.1412 REMARK 3 L33: 2.4587 L12: -0.2556 REMARK 3 L13: -0.3860 L23: 0.0694 REMARK 3 S TENSOR REMARK 3 S11: -0.0916 S12: 0.0007 S13: 0.0886 REMARK 3 S21: -0.0066 S22: 0.1612 S23: -0.0269 REMARK 3 S31: -0.3754 S32: -0.1901 S33: -0.0512 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6642 2.8719 169.9269 REMARK 3 T TENSOR REMARK 3 T11: 0.5985 T22: 0.3428 REMARK 3 T33: 0.3834 T12: -0.0103 REMARK 3 T13: 0.0167 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.3724 L22: 3.5399 REMARK 3 L33: 2.8487 L12: -0.5988 REMARK 3 L13: 0.6637 L23: 0.7283 REMARK 3 S TENSOR REMARK 3 S11: 0.0900 S12: 0.1494 S13: -0.3154 REMARK 3 S21: -0.8666 S22: 0.1145 S23: -0.1463 REMARK 3 S31: 0.3820 S32: 0.0994 S33: -0.1772 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.7712 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14173 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MM TRIS-HCL PH 7.4, 20% PEG MME REMARK 280 2000, 5MM MNCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.80100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 211.60200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 158.70150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 264.50250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.90050 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.80100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 211.60200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 264.50250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 158.70150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.90050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MN MN A 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 431 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 486 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 504 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 41 REMARK 465 TYR A 42 REMARK 465 ARG A 43 REMARK 465 ALA A 44 REMARK 465 LEU A 45 REMARK 465 HIS A 46 REMARK 465 GLN A 47 REMARK 465 PRO A 48 REMARK 465 VAL A 49 REMARK 465 PRO A 50 REMARK 465 ARG A 51 REMARK 465 GLY A 52 REMARK 465 GLY A 165 REMARK 465 LYS A 166 REMARK 465 ALA A 167 REMARK 465 ARG A 168 REMARK 465 GLN A 169 REMARK 465 ARG A 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 433 O HOH A 499 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 8 -117.59 -108.46 REMARK 500 LYS A 19 63.90 65.03 REMARK 500 ASP A 78 64.37 61.45 REMARK 500 HIS A 101 56.14 -103.13 REMARK 500 HIS A 156 -46.73 73.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 33 OD1 REMARK 620 2 HIS A 35 NE2 102.0 REMARK 620 3 ASP A 78 OD1 95.6 96.0 REMARK 620 4 HIS A 158 NE2 88.2 95.0 167.4 REMARK 620 5 HOH A 454 O 92.5 165.3 80.0 87.8 REMARK 620 6 HOH A 467 O 171.5 84.2 89.5 85.5 81.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 156 NE2 REMARK 620 2 HIS A 156 NE2 0.0 REMARK 620 3 HOH A 431 O 89.5 89.5 REMARK 620 4 HOH A 431 O 89.5 89.5 0.0 REMARK 620 5 HOH A 438 O 93.1 93.1 91.1 91.1 REMARK 620 6 HOH A 438 O 86.9 86.9 91.1 91.1 177.8 REMARK 620 7 HOH A 486 O 90.5 90.5 180.0 180.0 88.9 88.9 REMARK 620 8 HOH A 486 O 90.5 90.5 180.0 180.0 88.9 88.9 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NV0 RELATED DB: PDB REMARK 900 SAME PROTEIN, DIFFERENT CRYSTAL FORM DBREF 6NVP A 1 216 UNP Q88NV2 Q88NV2_PSEPK 1 216 SEQADV 6NVP SER A 0 UNP Q88NV2 EXPRESSION TAG SEQRES 1 A 217 SER MET ASN TYR GLN PRO ILE GLU HIS ARG GLY GLN ALA SEQRES 2 A 217 LEU TRP LEU LEU ALA ASP LYS ALA ILE TYR TRP PRO ALA SEQRES 3 A 217 ARG ARG ALA LEU LEU VAL ALA ASP VAL HIS ILE GLY LYS SEQRES 4 A 217 ALA ALA SER TYR ARG ALA LEU HIS GLN PRO VAL PRO ARG SEQRES 5 A 217 GLY THR THR GLU ALA THR LEU ALA ARG LEU ASP ARG LEU SEQRES 6 A 217 LEU ALA GLU HIS ASP CYS GLU GLN LEU ILE ILE LEU GLY SEQRES 7 A 217 ASP PHE LEU HIS ALA ARG THR ALA ARG ALA PRO ALA THR SEQRES 8 A 217 LEU ALA LYS VAL GLU ASP TRP ARG LYS ARG HIS LYS ASN SEQRES 9 A 217 LEU LYS VAL VAL LEU ILE ARG GLY ASN HIS ASP ARG ASN SEQRES 10 A 217 ALA GLY ASP PRO PRO ALA SER LEU ASP ILE GLN VAL VAL SEQRES 11 A 217 ASP GLU PRO TRP VAL LEU GLU PRO PHE ALA LEU GLN HIS SEQRES 12 A 217 GLU PRO GLN PRO HIS GLY THR HIS PRO VAL LEU ALA GLY SEQRES 13 A 217 HIS VAL HIS PRO VAL PHE VAL LEU ARG GLY LYS ALA ARG SEQRES 14 A 217 GLN ARG LEU ARG LEU PRO CYS PHE VAL ILE ASP GLU GLN SEQRES 15 A 217 VAL SER LEU LEU PRO ALA PHE GLY GLU PHE THR GLY GLY SEQRES 16 A 217 TRP GLU ILE THR PRO ALA SER ALA SER ARG LEU TYR LEU SEQRES 17 A 217 ALA GLY ALA GLU ARG VAL TRP PRO LEU HET MN A 301 1 HET MN A 302 1 HETNAM MN MANGANESE (II) ION FORMUL 2 MN 2(MN 2+) FORMUL 4 HOH *105(H2 O) HELIX 1 AA1 PRO A 24 ARG A 26 5 3 HELIX 2 AA2 THR A 54 HIS A 68 1 15 HELIX 3 AA3 ALA A 82 ARG A 86 5 5 HELIX 4 AA4 ALA A 89 HIS A 101 1 13 HELIX 5 AA5 GLY A 111 GLY A 118 1 8 HELIX 6 AA6 PRO A 121 ASP A 125 5 5 SHEET 1 AA1 7 TYR A 3 GLU A 7 0 SHEET 2 AA1 7 ALA A 12 LEU A 16 -1 O LEU A 13 N ILE A 6 SHEET 3 AA1 7 ALA A 20 TRP A 23 -1 O ALA A 20 N LEU A 16 SHEET 4 AA1 7 ALA A 28 VAL A 31 -1 O LEU A 30 N ILE A 21 SHEET 5 AA1 7 GLN A 72 LEU A 76 1 O LEU A 76 N VAL A 31 SHEET 6 AA1 7 LYS A 105 ARG A 110 1 O VAL A 107 N ILE A 75 SHEET 7 AA1 7 GLN A 127 ASP A 130 1 O VAL A 129 N ARG A 110 SHEET 1 AA2 4 TRP A 133 LEU A 135 0 SHEET 2 AA2 4 PHE A 138 LEU A 140 -1 O PHE A 138 N LEU A 135 SHEET 3 AA2 4 VAL A 152 ALA A 154 1 O LEU A 153 N ALA A 139 SHEET 4 AA2 4 VAL A 182 LEU A 184 1 O SER A 183 N VAL A 152 SHEET 1 AA3 4 VAL A 160 VAL A 162 0 SHEET 2 AA3 4 ARG A 172 ILE A 178 -1 O LEU A 173 N PHE A 161 SHEET 3 AA3 4 ARG A 204 GLY A 209 -1 O TYR A 206 N PHE A 176 SHEET 4 AA3 4 ARG A 212 PRO A 215 -1 O TRP A 214 N LEU A 207 LINK OD1 ASP A 33 MN MN A 302 1555 1555 2.08 LINK NE2 HIS A 35 MN MN A 302 1555 1555 2.29 LINK OD1 ASP A 78 MN MN A 302 1555 1555 2.18 LINK NE2 HIS A 156 MN MN A 301 1555 1555 2.25 LINK NE2 HIS A 156 MN MN A 301 1555 12556 2.25 LINK NE2 HIS A 158 MN MN A 302 1555 1555 2.49 LINK MN MN A 301 O HOH A 431 1555 1555 2.09 LINK MN MN A 301 O HOH A 431 1555 12556 2.09 LINK MN MN A 301 O HOH A 438 1555 1555 2.27 LINK MN MN A 301 O HOH A 438 1555 12556 2.27 LINK MN MN A 301 O HOH A 486 1555 1555 2.25 LINK MN MN A 301 O HOH A 486 1555 12556 2.25 LINK MN MN A 302 O HOH A 454 1555 1555 2.16 LINK MN MN A 302 O HOH A 467 1555 1555 2.06 CISPEP 1 ASP A 119 PRO A 120 0 -3.93 CISPEP 2 GLU A 131 PRO A 132 0 -6.77 CISPEP 3 GLU A 136 PRO A 137 0 6.95 SITE 1 AC1 4 HIS A 156 HOH A 431 HOH A 438 HOH A 486 SITE 1 AC2 6 ASP A 33 HIS A 35 ASP A 78 HIS A 158 SITE 2 AC2 6 HOH A 454 HOH A 467 CRYST1 45.394 45.394 317.403 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022029 0.012719 0.000000 0.00000 SCALE2 0.000000 0.025437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003151 0.00000