HEADER HYDROLASE 05-FEB-19 6NVQ TITLE CRYSTAL STRUCTURE OF THE VASH1-SVBP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULINYL-TYR CARBOXYPEPTIDASE 1; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: TUBULIN CARBOXYPEPTIDASE 1,TYROSINE CARBOXYPEPTIDASE 1,TTCP COMPND 5 1,VASOHIBIN-1; COMPND 6 EC: 3.4.17.17; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SMALL VASOHIBIN-BINDING PROTEIN; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: COILED COIL DOMAIN-CONTAINING PROTEIN 23; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VASH1, KIAA1036, VASH; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: SVBP, CCDC23; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS TYROSINE CARBOXYPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ADAMOPOULOS,A.PERRAKIS,T.HEIDEBRECHT REVDAT 3 17-JUL-19 6NVQ 1 JRNL REVDAT 2 03-JUL-19 6NVQ 1 JRNL REVDAT 1 22-MAY-19 6NVQ 0 JRNL AUTH A.ADAMOPOULOS,L.LANDSKRON,T.HEIDEBRECHT,F.TSAKOU, JRNL AUTH 2 O.B.BLEIJERVELD,M.ALTELAAR,J.NIEUWENHUIS,P.H.N.CELIE, JRNL AUTH 3 T.R.BRUMMELKAMP,A.PERRAKIS JRNL TITL CRYSTAL STRUCTURE OF THE TUBULIN TYROSINE CARBOXYPEPTIDASE JRNL TITL 2 COMPLEX VASH1-SVBP. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 567 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31270470 JRNL DOI 10.1038/S41594-019-0254-6 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 23437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1259 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1739 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : -1.87000 REMARK 3 B33 (A**2) : 2.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.171 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.353 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2297 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2186 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3096 ; 1.220 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5062 ; 1.115 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 6.264 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;27.311 ;20.511 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 420 ;13.722 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.269 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2527 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 513 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1088 ; 2.153 ; 3.909 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1087 ; 2.150 ; 3.905 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1357 ; 3.039 ; 5.853 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1358 ; 3.038 ; 5.858 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1209 ; 3.213 ; 4.417 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1210 ; 3.213 ; 4.421 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1739 ; 4.841 ; 6.432 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2445 ; 6.615 ;44.389 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2446 ; 6.616 ;44.431 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6985 21.0062 -7.5133 REMARK 3 T TENSOR REMARK 3 T11: 0.3794 T22: 0.3610 REMARK 3 T33: 0.4743 T12: -0.1223 REMARK 3 T13: 0.0732 T23: -0.0634 REMARK 3 L TENSOR REMARK 3 L11: 14.5312 L22: 8.4092 REMARK 3 L33: 1.1402 L12: 10.9520 REMARK 3 L13: 3.6269 L23: 2.9055 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.2233 S13: -0.1395 REMARK 3 S21: 0.0578 S22: -0.2435 S23: 0.1616 REMARK 3 S31: 0.1689 S32: -0.2301 S33: 0.2423 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 47 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5288 27.3467 -7.2409 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.0215 REMARK 3 T33: 0.1486 T12: 0.0419 REMARK 3 T13: 0.0173 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 8.1983 L22: 4.2449 REMARK 3 L33: 7.2329 L12: 1.2636 REMARK 3 L13: 1.7142 L23: -2.4977 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: 0.1035 S13: 0.1617 REMARK 3 S21: -0.4455 S22: -0.1144 S23: 0.0543 REMARK 3 S31: -0.3112 S32: -0.1509 S33: 0.1270 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 48 B 53 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7274 35.0764 -2.7356 REMARK 3 T TENSOR REMARK 3 T11: 0.3143 T22: 0.2739 REMARK 3 T33: 0.2445 T12: 0.0065 REMARK 3 T13: -0.0319 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 7.7653 L22: 5.0818 REMARK 3 L33: 0.9596 L12: 2.3955 REMARK 3 L13: 1.2893 L23: -1.3992 REMARK 3 S TENSOR REMARK 3 S11: -0.1195 S12: -0.1852 S13: -0.0704 REMARK 3 S21: 0.0509 S22: -0.0386 S23: -0.4100 REMARK 3 S31: -0.0784 S32: -0.0303 S33: 0.1581 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 60 C 94 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4871 36.0752 -2.1256 REMARK 3 T TENSOR REMARK 3 T11: 0.2178 T22: 0.0987 REMARK 3 T33: 0.3122 T12: 0.1056 REMARK 3 T13: -0.0140 T23: -0.0660 REMARK 3 L TENSOR REMARK 3 L11: 6.0204 L22: 5.2197 REMARK 3 L33: 8.1045 L12: 0.4108 REMARK 3 L13: -0.4017 L23: 1.4411 REMARK 3 S TENSOR REMARK 3 S11: 0.0255 S12: -0.1525 S13: 0.6634 REMARK 3 S21: 0.2625 S22: -0.0707 S23: 0.0896 REMARK 3 S31: -0.7505 S32: -0.0877 S33: 0.0452 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 95 C 167 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1910 16.5402 3.1864 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.1679 REMARK 3 T33: 0.2249 T12: 0.0362 REMARK 3 T13: 0.0182 T23: -0.1002 REMARK 3 L TENSOR REMARK 3 L11: 0.9937 L22: 3.2916 REMARK 3 L33: 1.6184 L12: -0.5906 REMARK 3 L13: 0.6725 L23: -1.9700 REMARK 3 S TENSOR REMARK 3 S11: 0.1271 S12: 0.0304 S13: 0.0654 REMARK 3 S21: -0.1405 S22: -0.2082 S23: 0.1241 REMARK 3 S31: 0.0804 S32: -0.1046 S33: 0.0811 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 168 C 304 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7941 18.9157 19.5408 REMARK 3 T TENSOR REMARK 3 T11: 0.0806 T22: 0.0802 REMARK 3 T33: 0.1475 T12: -0.0400 REMARK 3 T13: 0.0160 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 3.9959 L22: 4.0749 REMARK 3 L33: 1.3591 L12: 1.6140 REMARK 3 L13: 0.6042 L23: 0.9491 REMARK 3 S TENSOR REMARK 3 S11: 0.1314 S12: -0.4666 S13: 0.2030 REMARK 3 S21: 0.3880 S22: -0.1203 S23: -0.1697 REMARK 3 S31: -0.1030 S32: 0.0590 S33: -0.0110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6NVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8-8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24696 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 1.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3000, 0.1M TRIS-HCL, 0.2M REMARK 280 CALCIUM CHLORIDE, PH 8.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.22650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.46450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.22650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.46450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 GLY C 3 REMARK 465 GLY C 4 REMARK 465 LYS C 5 REMARK 465 LYS C 6 REMARK 465 VAL C 7 REMARK 465 ALA C 8 REMARK 465 GLY C 9 REMARK 465 GLY C 10 REMARK 465 GLY C 11 REMARK 465 SER C 12 REMARK 465 SER C 13 REMARK 465 GLY C 14 REMARK 465 ALA C 15 REMARK 465 THR C 16 REMARK 465 PRO C 17 REMARK 465 THR C 18 REMARK 465 SER C 19 REMARK 465 ALA C 20 REMARK 465 ALA C 21 REMARK 465 ALA C 22 REMARK 465 THR C 23 REMARK 465 ALA C 24 REMARK 465 PRO C 25 REMARK 465 SER C 26 REMARK 465 GLY C 27 REMARK 465 VAL C 28 REMARK 465 ARG C 29 REMARK 465 ARG C 30 REMARK 465 LEU C 31 REMARK 465 GLU C 32 REMARK 465 THR C 33 REMARK 465 SER C 34 REMARK 465 GLU C 35 REMARK 465 GLY C 36 REMARK 465 THR C 37 REMARK 465 SER C 38 REMARK 465 ALA C 39 REMARK 465 GLN C 40 REMARK 465 ARG C 41 REMARK 465 ASP C 42 REMARK 465 GLU C 43 REMARK 465 GLU C 44 REMARK 465 PRO C 45 REMARK 465 GLU C 46 REMARK 465 GLU C 47 REMARK 465 GLU C 48 REMARK 465 GLY C 49 REMARK 465 GLU C 50 REMARK 465 GLU C 51 REMARK 465 ASP C 52 REMARK 465 LEU C 53 REMARK 465 ARG C 54 REMARK 465 ASP C 55 REMARK 465 GLY C 56 REMARK 465 GLY C 57 REMARK 465 VAL C 58 REMARK 465 PRO C 59 REMARK 465 PHE C 60 REMARK 465 ILE C 305 REMARK 465 GLY C 306 REMARK 465 LYS C 307 REMARK 465 GLY C 308 REMARK 465 THR C 309 REMARK 465 GLY C 310 REMARK 465 PRO C 311 REMARK 465 PRO C 312 REMARK 465 SER C 313 REMARK 465 PRO C 314 REMARK 465 THR C 315 REMARK 465 ASP C 316 REMARK 465 VAL C 317 REMARK 465 LEU C 318 REMARK 465 PHE C 319 REMARK 465 GLN C 320 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 7 REMARK 465 GLU B 8 REMARK 465 LYS B 9 REMARK 465 THR B 10 REMARK 465 LYS B 11 REMARK 465 VAL B 12 REMARK 465 LYS B 13 REMARK 465 GLU B 14 REMARK 465 SER B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 ARG B 18 REMARK 465 VAL B 19 REMARK 465 GLU B 20 REMARK 465 LYS B 21 REMARK 465 ALA B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 24 REMARK 465 LYS B 25 REMARK 465 PHE B 54 REMARK 465 ASP B 55 REMARK 465 GLU B 56 REMARK 465 PHE B 57 REMARK 465 CYS B 58 REMARK 465 LYS B 59 REMARK 465 GLN B 60 REMARK 465 MET B 61 REMARK 465 GLN B 62 REMARK 465 PRO B 63 REMARK 465 PRO B 64 REMARK 465 GLY B 65 REMARK 465 GLU B 66 REMARK 465 ASP B 67 REMARK 465 VAL B 68 REMARK 465 LEU B 69 REMARK 465 PHE B 70 REMARK 465 GLN B 71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN C 133 144.77 79.79 REMARK 500 GLN C 133 143.82 81.12 REMARK 500 LYS C 168 -166.66 -120.45 REMARK 500 MET C 227 -100.25 -134.63 REMARK 500 GLN B 52 64.96 -117.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 402 DBREF 6NVQ C 1 315 UNP Q7L8A9 VASH1_HUMAN 1 315 DBREF 6NVQ B 1 66 UNP Q8N300 SVBP_HUMAN 1 66 SEQADV 6NVQ ALA C 169 UNP Q7L8A9 CYS 169 ENGINEERED MUTATION SEQADV 6NVQ ASP C 316 UNP Q7L8A9 EXPRESSION TAG SEQADV 6NVQ VAL C 317 UNP Q7L8A9 EXPRESSION TAG SEQADV 6NVQ LEU C 318 UNP Q7L8A9 EXPRESSION TAG SEQADV 6NVQ PHE C 319 UNP Q7L8A9 EXPRESSION TAG SEQADV 6NVQ GLN C 320 UNP Q7L8A9 EXPRESSION TAG SEQADV 6NVQ ASP B 67 UNP Q8N300 EXPRESSION TAG SEQADV 6NVQ VAL B 68 UNP Q8N300 EXPRESSION TAG SEQADV 6NVQ LEU B 69 UNP Q8N300 EXPRESSION TAG SEQADV 6NVQ PHE B 70 UNP Q8N300 EXPRESSION TAG SEQADV 6NVQ GLN B 71 UNP Q8N300 EXPRESSION TAG SEQRES 1 C 320 MET PRO GLY GLY LYS LYS VAL ALA GLY GLY GLY SER SER SEQRES 2 C 320 GLY ALA THR PRO THR SER ALA ALA ALA THR ALA PRO SER SEQRES 3 C 320 GLY VAL ARG ARG LEU GLU THR SER GLU GLY THR SER ALA SEQRES 4 C 320 GLN ARG ASP GLU GLU PRO GLU GLU GLU GLY GLU GLU ASP SEQRES 5 C 320 LEU ARG ASP GLY GLY VAL PRO PHE PHE VAL ASN ARG GLY SEQRES 6 C 320 GLY LEU PRO VAL ASP GLU ALA THR TRP GLU ARG MET TRP SEQRES 7 C 320 LYS HIS VAL ALA LYS ILE HIS PRO ASP GLY GLU LYS VAL SEQRES 8 C 320 ALA GLN ARG ILE ARG GLY ALA THR ASP LEU PRO LYS ILE SEQRES 9 C 320 PRO ILE PRO SER VAL PRO THR PHE GLN PRO SER THR PRO SEQRES 10 C 320 VAL PRO GLU ARG LEU GLU ALA VAL GLN ARG TYR ILE ARG SEQRES 11 C 320 GLU LEU GLN TYR ASN HIS THR GLY THR GLN PHE PHE GLU SEQRES 12 C 320 ILE LYS LYS SER ARG PRO LEU THR GLY LEU MET ASP LEU SEQRES 13 C 320 ALA LYS GLU MET THR LYS GLU ALA LEU PRO ILE LYS ALA SEQRES 14 C 320 LEU GLU ALA VAL ILE LEU GLY ILE TYR LEU THR ASN SER SEQRES 15 C 320 MET PRO THR LEU GLU ARG PHE PRO ILE SER PHE LYS THR SEQRES 16 C 320 TYR PHE SER GLY ASN TYR PHE ARG HIS ILE VAL LEU GLY SEQRES 17 C 320 VAL ASN PHE ALA GLY ARG TYR GLY ALA LEU GLY MET SER SEQRES 18 C 320 ARG ARG GLU ASP LEU MET TYR LYS PRO PRO ALA PHE ARG SEQRES 19 C 320 THR LEU SER GLU LEU VAL LEU ASP PHE GLU ALA ALA TYR SEQRES 20 C 320 GLY ARG CYS TRP HIS VAL LEU LYS LYS VAL LYS LEU GLY SEQRES 21 C 320 GLN SER VAL SER HIS ASP PRO HIS SER VAL GLU GLN ILE SEQRES 22 C 320 GLU TRP LYS HIS SER VAL LEU ASP VAL GLU ARG LEU GLY SEQRES 23 C 320 ARG ASP ASP PHE ARG LYS GLU LEU GLU ARG HIS ALA ARG SEQRES 24 C 320 ASP MET ARG LEU LYS ILE GLY LYS GLY THR GLY PRO PRO SEQRES 25 C 320 SER PRO THR ASP VAL LEU PHE GLN SEQRES 1 B 71 MET ASP PRO PRO ALA ARG LYS GLU LYS THR LYS VAL LYS SEQRES 2 B 71 GLU SER VAL SER ARG VAL GLU LYS ALA LYS GLN LYS SER SEQRES 3 B 71 ALA GLN GLN GLU LEU LYS GLN ARG GLN ARG ALA GLU ILE SEQRES 4 B 71 TYR ALA LEU ASN ARG VAL MET THR GLU LEU GLU GLN GLN SEQRES 5 B 71 GLN PHE ASP GLU PHE CYS LYS GLN MET GLN PRO PRO GLY SEQRES 6 B 71 GLU ASP VAL LEU PHE GLN HET GOL C 401 6 HET GOL C 402 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *76(H2 O) HELIX 1 AA1 ASP C 70 HIS C 85 1 16 HELIX 2 AA2 ASP C 87 ARG C 96 1 10 HELIX 3 AA3 PRO C 117 LEU C 132 1 16 HELIX 4 AA4 PRO C 149 ALA C 164 1 16 HELIX 5 AA5 LYS C 168 LEU C 179 1 12 HELIX 6 AA6 ARG C 223 MET C 227 5 5 HELIX 7 AA7 THR C 235 CYS C 250 1 16 HELIX 8 AA8 VAL C 282 GLY C 286 1 5 HELIX 9 AA9 GLY C 286 LYS C 304 1 19 HELIX 10 AB1 ALA B 27 GLN B 51 1 25 SHEET 1 AA1 6 LYS C 229 PHE C 233 0 SHEET 2 AA1 6 ARG C 214 LEU C 218 -1 N TYR C 215 O PHE C 233 SHEET 3 AA1 6 ASN C 200 PHE C 211 -1 N LEU C 207 O LEU C 218 SHEET 4 AA1 6 LEU C 186 PHE C 197 -1 N PHE C 193 O HIS C 204 SHEET 5 AA1 6 VAL C 253 LEU C 259 -1 O LYS C 258 N SER C 192 SHEET 6 AA1 6 SER C 278 ASP C 281 -1 O LEU C 280 N VAL C 257 CISPEP 1 LEU C 67 PRO C 68 0 2.39 SITE 1 AC1 3 THR C 185 ASN C 210 ALA C 212 SITE 1 AC2 4 VAL C 109 GLN C 113 THR C 161 LYS C 162 CRYST1 70.453 128.929 45.222 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014194 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022113 0.00000