HEADER TRANSCRIPTION 06-FEB-19 6NWO TITLE STRUCTURES OF THE TRANSCRIPTIONAL REGULATOR BGAR, A LACTOSE SENSOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR BGAR; COMPND 3 CHAIN: A, D, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS (STRAIN 13 / TYPE A); SOURCE 3 ORGANISM_TAXID: 195102; SOURCE 4 STRAIN: 13 / TYPE A; SOURCE 5 GENE: CPE0770; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LACTOSE TRANSCRIPTIONAL REGULATOR, LACTOSE SENSOR, SAD PHASING, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR T.S.PEAT,J.NEWMAN REVDAT 4 11-OCT-23 6NWO 1 HETSYN REVDAT 3 29-JUL-20 6NWO 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN FORMUL LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 24-JUL-19 6NWO 1 JRNL REVDAT 1 17-JUL-19 6NWO 0 JRNL AUTH J.NEWMAN,K.CARON,T.NEBL,T.S.PEAT JRNL TITL STRUCTURES OF THE TRANSCRIPTIONAL REGULATOR BGAR, A LACTOSE JRNL TITL 2 SENSOR. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 639 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31282473 JRNL DOI 10.1107/S2059798319008131 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 39182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2066 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2652 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.10000 REMARK 3 B22 (A**2) : 2.97000 REMARK 3 B33 (A**2) : -1.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.215 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5253 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4707 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7138 ; 1.427 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10999 ; 1.334 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 639 ; 6.490 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 258 ;38.480 ;25.310 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 896 ;14.253 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;15.453 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 683 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5855 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1045 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2544 ; 3.216 ; 4.031 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2543 ; 3.210 ; 4.029 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3187 ; 4.532 ; 6.028 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3188 ; 4.532 ; 6.031 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2709 ; 4.356 ; 4.570 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2710 ; 4.356 ; 4.571 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3952 ; 6.704 ; 6.660 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 21313 ; 9.176 ;76.905 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 21250 ; 9.175 ;76.935 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 10 160 D 10 160 4890 0.08 0.05 REMARK 3 2 A 11 160 B 11 160 4861 0.09 0.05 REMARK 3 3 A 10 160 C 10 160 4863 0.10 0.05 REMARK 3 4 D 11 160 B 11 160 4809 0.08 0.05 REMARK 3 5 D 3 160 C 3 160 5026 0.09 0.05 REMARK 3 6 B 11 160 C 11 160 4866 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6NWO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953723 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41261 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 43.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.67200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6NWH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MG/ML PROTEIN; 21.7% PEG 3350, 222MM REMARK 280 MGCL2, 100MM BIS-TRIS PH 5.7. SITTING DROPS WERE SET UP IN 200 REMARK 280 NL PLUS 200 NL VOLUMES AT 20C, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.46080 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.24100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.85833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.46080 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.24100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 130.85833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ILE A 3 REMARK 465 LEU A 4 REMARK 465 TRP A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 TYR A 8 REMARK 465 VAL A 9 REMARK 465 PHE A 162 REMARK 465 GLU A 163 REMARK 465 TYR A 164 REMARK 465 LYS A 165 REMARK 465 ASP A 166 REMARK 465 LYS A 167 REMARK 465 GLU A 168 REMARK 465 LEU A 169 REMARK 465 HIS A 170 REMARK 465 LEU A 171 REMARK 465 VAL A 172 REMARK 465 PRO A 173 REMARK 465 ARG A 174 REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 ASP D 166 REMARK 465 LYS D 167 REMARK 465 GLU D 168 REMARK 465 LEU D 169 REMARK 465 HIS D 170 REMARK 465 LEU D 171 REMARK 465 VAL D 172 REMARK 465 PRO D 173 REMARK 465 ARG D 174 REMARK 465 GLY D 175 REMARK 465 SER D 176 REMARK 465 HIS D 177 REMARK 465 HIS D 178 REMARK 465 HIS D 179 REMARK 465 HIS D 180 REMARK 465 HIS D 181 REMARK 465 HIS D 182 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 ILE B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 LYS B 6 REMARK 465 LYS B 7 REMARK 465 TYR B 8 REMARK 465 VAL B 9 REMARK 465 LYS B 10 REMARK 465 PHE B 162 REMARK 465 GLU B 163 REMARK 465 TYR B 164 REMARK 465 LYS B 165 REMARK 465 ASP B 166 REMARK 465 LYS B 167 REMARK 465 GLU B 168 REMARK 465 LEU B 169 REMARK 465 HIS B 170 REMARK 465 LEU B 171 REMARK 465 VAL B 172 REMARK 465 PRO B 173 REMARK 465 ARG B 174 REMARK 465 GLY B 175 REMARK 465 SER B 176 REMARK 465 HIS B 177 REMARK 465 HIS B 178 REMARK 465 HIS B 179 REMARK 465 HIS B 180 REMARK 465 HIS B 181 REMARK 465 HIS B 182 REMARK 465 MET C 1 REMARK 465 GLN C 2 REMARK 465 PHE C 162 REMARK 465 GLU C 163 REMARK 465 TYR C 164 REMARK 465 LYS C 165 REMARK 465 ASP C 166 REMARK 465 LYS C 167 REMARK 465 GLU C 168 REMARK 465 LEU C 169 REMARK 465 HIS C 170 REMARK 465 LEU C 171 REMARK 465 VAL C 172 REMARK 465 PRO C 173 REMARK 465 ARG C 174 REMARK 465 GLY C 175 REMARK 465 SER C 176 REMARK 465 HIS C 177 REMARK 465 HIS C 178 REMARK 465 HIS C 179 REMARK 465 HIS C 180 REMARK 465 HIS C 181 REMARK 465 HIS C 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET D 1 CG SD CE REMARK 470 LYS D 7 CG CD CE NZ REMARK 470 GLU D 11 CG CD OE1 OE2 REMARK 470 LYS D 165 CG CD CE NZ REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 ILE C 3 CG1 CG2 CD1 REMARK 470 TRP C 5 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 5 CZ3 CH2 REMARK 470 LYS C 6 CG CD CE NZ REMARK 470 LYS C 7 CG CD CE NZ REMARK 470 LYS C 10 CG CD CE NZ REMARK 470 GLU C 11 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 223 O HOH A 237 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP D 5 84.27 -155.12 REMARK 500 LYS D 70 128.48 -39.10 REMARK 500 TRP C 5 87.93 -159.97 REMARK 500 REMARK 500 REMARK: NULL DBREF 6NWO A 1 170 UNP Q8XMB9 Q8XMB9_CLOPE 1 170 DBREF 6NWO D 1 170 UNP Q8XMB9 Q8XMB9_CLOPE 1 170 DBREF 6NWO B 1 170 UNP Q8XMB9 Q8XMB9_CLOPE 1 170 DBREF 6NWO C 1 170 UNP Q8XMB9 Q8XMB9_CLOPE 1 170 SEQADV 6NWO LEU A 171 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO VAL A 172 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO PRO A 173 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO ARG A 174 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO GLY A 175 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO SER A 176 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS A 177 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS A 178 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS A 179 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS A 180 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS A 181 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS A 182 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO LEU D 171 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO VAL D 172 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO PRO D 173 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO ARG D 174 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO GLY D 175 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO SER D 176 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS D 177 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS D 178 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS D 179 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS D 180 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS D 181 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS D 182 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO LEU B 171 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO VAL B 172 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO PRO B 173 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO ARG B 174 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO GLY B 175 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO SER B 176 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS B 177 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS B 178 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS B 179 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS B 180 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS B 181 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS B 182 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO LEU C 171 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO VAL C 172 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO PRO C 173 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO ARG C 174 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO GLY C 175 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO SER C 176 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS C 177 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS C 178 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS C 179 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS C 180 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS C 181 UNP Q8XMB9 EXPRESSION TAG SEQADV 6NWO HIS C 182 UNP Q8XMB9 EXPRESSION TAG SEQRES 1 A 182 MET GLN ILE LEU TRP LYS LYS TYR VAL LYS GLU ASN PHE SEQRES 2 A 182 GLU MET ASN VAL ASP GLU CYS GLY ILE GLU GLN GLY ILE SEQRES 3 A 182 PRO GLY LEU GLY TYR ASN TYR GLU VAL LEU LYS ASN ALA SEQRES 4 A 182 VAL ILE HIS TYR VAL THR LYS GLY TYR GLY THR PHE LYS SEQRES 5 A 182 PHE ASN GLY LYS VAL TYR ASN LEU LYS GLN GLY ASP ILE SEQRES 6 A 182 PHE ILE LEU LEU LYS GLY MET GLN VAL GLU TYR VAL ALA SEQRES 7 A 182 SER ILE ASP ASP PRO TRP GLU TYR TYR TRP ILE GLY PHE SEQRES 8 A 182 SER GLY SER ASN ALA ASN GLU TYR LEU ASN ARG THR SER SEQRES 9 A 182 ILE THR ASN SER CYS VAL ALA ASN CYS GLU GLU ASN SER SEQRES 10 A 182 LYS ILE PRO GLN ILE ILE LEU ASN MET CYS GLU ILE SER SEQRES 11 A 182 LYS THR TYR ASN PRO SER ARG SER ASP ASP ILE LEU LEU SEQRES 12 A 182 LEU LYS GLU LEU TYR SER LEU LEU TYR ALA LEU ILE GLU SEQRES 13 A 182 GLU PHE PRO LYS PRO PHE GLU TYR LYS ASP LYS GLU LEU SEQRES 14 A 182 HIS LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 182 MET GLN ILE LEU TRP LYS LYS TYR VAL LYS GLU ASN PHE SEQRES 2 D 182 GLU MET ASN VAL ASP GLU CYS GLY ILE GLU GLN GLY ILE SEQRES 3 D 182 PRO GLY LEU GLY TYR ASN TYR GLU VAL LEU LYS ASN ALA SEQRES 4 D 182 VAL ILE HIS TYR VAL THR LYS GLY TYR GLY THR PHE LYS SEQRES 5 D 182 PHE ASN GLY LYS VAL TYR ASN LEU LYS GLN GLY ASP ILE SEQRES 6 D 182 PHE ILE LEU LEU LYS GLY MET GLN VAL GLU TYR VAL ALA SEQRES 7 D 182 SER ILE ASP ASP PRO TRP GLU TYR TYR TRP ILE GLY PHE SEQRES 8 D 182 SER GLY SER ASN ALA ASN GLU TYR LEU ASN ARG THR SER SEQRES 9 D 182 ILE THR ASN SER CYS VAL ALA ASN CYS GLU GLU ASN SER SEQRES 10 D 182 LYS ILE PRO GLN ILE ILE LEU ASN MET CYS GLU ILE SER SEQRES 11 D 182 LYS THR TYR ASN PRO SER ARG SER ASP ASP ILE LEU LEU SEQRES 12 D 182 LEU LYS GLU LEU TYR SER LEU LEU TYR ALA LEU ILE GLU SEQRES 13 D 182 GLU PHE PRO LYS PRO PHE GLU TYR LYS ASP LYS GLU LEU SEQRES 14 D 182 HIS LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 182 MET GLN ILE LEU TRP LYS LYS TYR VAL LYS GLU ASN PHE SEQRES 2 B 182 GLU MET ASN VAL ASP GLU CYS GLY ILE GLU GLN GLY ILE SEQRES 3 B 182 PRO GLY LEU GLY TYR ASN TYR GLU VAL LEU LYS ASN ALA SEQRES 4 B 182 VAL ILE HIS TYR VAL THR LYS GLY TYR GLY THR PHE LYS SEQRES 5 B 182 PHE ASN GLY LYS VAL TYR ASN LEU LYS GLN GLY ASP ILE SEQRES 6 B 182 PHE ILE LEU LEU LYS GLY MET GLN VAL GLU TYR VAL ALA SEQRES 7 B 182 SER ILE ASP ASP PRO TRP GLU TYR TYR TRP ILE GLY PHE SEQRES 8 B 182 SER GLY SER ASN ALA ASN GLU TYR LEU ASN ARG THR SER SEQRES 9 B 182 ILE THR ASN SER CYS VAL ALA ASN CYS GLU GLU ASN SER SEQRES 10 B 182 LYS ILE PRO GLN ILE ILE LEU ASN MET CYS GLU ILE SER SEQRES 11 B 182 LYS THR TYR ASN PRO SER ARG SER ASP ASP ILE LEU LEU SEQRES 12 B 182 LEU LYS GLU LEU TYR SER LEU LEU TYR ALA LEU ILE GLU SEQRES 13 B 182 GLU PHE PRO LYS PRO PHE GLU TYR LYS ASP LYS GLU LEU SEQRES 14 B 182 HIS LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 182 MET GLN ILE LEU TRP LYS LYS TYR VAL LYS GLU ASN PHE SEQRES 2 C 182 GLU MET ASN VAL ASP GLU CYS GLY ILE GLU GLN GLY ILE SEQRES 3 C 182 PRO GLY LEU GLY TYR ASN TYR GLU VAL LEU LYS ASN ALA SEQRES 4 C 182 VAL ILE HIS TYR VAL THR LYS GLY TYR GLY THR PHE LYS SEQRES 5 C 182 PHE ASN GLY LYS VAL TYR ASN LEU LYS GLN GLY ASP ILE SEQRES 6 C 182 PHE ILE LEU LEU LYS GLY MET GLN VAL GLU TYR VAL ALA SEQRES 7 C 182 SER ILE ASP ASP PRO TRP GLU TYR TYR TRP ILE GLY PHE SEQRES 8 C 182 SER GLY SER ASN ALA ASN GLU TYR LEU ASN ARG THR SER SEQRES 9 C 182 ILE THR ASN SER CYS VAL ALA ASN CYS GLU GLU ASN SER SEQRES 10 C 182 LYS ILE PRO GLN ILE ILE LEU ASN MET CYS GLU ILE SER SEQRES 11 C 182 LYS THR TYR ASN PRO SER ARG SER ASP ASP ILE LEU LEU SEQRES 12 C 182 LEU LYS GLU LEU TYR SER LEU LEU TYR ALA LEU ILE GLU SEQRES 13 C 182 GLU PHE PRO LYS PRO PHE GLU TYR LYS ASP LYS GLU LEU SEQRES 14 C 182 HIS LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HIS HIS HET BGC E 1 12 HET GAL E 2 11 HET GOL C 201 6 HET CL C 202 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 BGC C6 H12 O6 FORMUL 5 GAL C6 H12 O6 FORMUL 6 GOL C3 H8 O3 FORMUL 7 CL CL 1- FORMUL 8 HOH *148(H2 O) HELIX 1 AA1 GLY A 93 ASN A 101 1 9 HELIX 2 AA2 LYS A 118 THR A 132 1 15 HELIX 3 AA3 TYR A 133 ARG A 137 5 5 HELIX 4 AA4 SER A 138 PHE A 158 1 21 HELIX 5 AA5 GLY D 93 ASN D 101 1 9 HELIX 6 AA6 LYS D 118 THR D 132 1 15 HELIX 7 AA7 TYR D 133 ARG D 137 5 5 HELIX 8 AA8 SER D 138 PHE D 158 1 21 HELIX 9 AA9 GLY B 93 ASN B 101 1 9 HELIX 10 AB1 LYS B 118 THR B 132 1 15 HELIX 11 AB2 TYR B 133 ARG B 137 5 5 HELIX 12 AB3 SER B 138 PHE B 158 1 21 HELIX 13 AB4 GLY C 93 ASN C 101 1 9 HELIX 14 AB5 LYS C 118 THR C 132 1 15 HELIX 15 AB6 TYR C 133 ARG C 137 5 5 HELIX 16 AB7 SER C 138 PHE C 158 1 21 SHEET 1 AA1 5 ASN A 16 GLN A 24 0 SHEET 2 AA1 5 GLU A 85 SER A 92 -1 O GLY A 90 N GLU A 19 SHEET 3 AA1 5 ALA A 39 LYS A 46 -1 N TYR A 43 O TYR A 87 SHEET 4 AA1 5 ASP A 64 LEU A 69 -1 O PHE A 66 N HIS A 42 SHEET 5 AA1 5 VAL A 110 ASN A 112 -1 O ALA A 111 N ILE A 65 SHEET 1 AA2 4 GLY A 30 GLU A 34 0 SHEET 2 AA2 4 GLN A 73 ALA A 78 -1 O VAL A 74 N TYR A 33 SHEET 3 AA2 4 TYR A 48 PHE A 53 -1 N LYS A 52 O GLU A 75 SHEET 4 AA2 4 LYS A 56 LYS A 61 -1 O LEU A 60 N GLY A 49 SHEET 1 AA3 6 GLN D 2 LYS D 7 0 SHEET 2 AA3 6 ASN D 16 GLN D 24 -1 O CYS D 20 N LYS D 6 SHEET 3 AA3 6 GLU D 85 SER D 92 -1 O GLY D 90 N GLU D 19 SHEET 4 AA3 6 ALA D 39 LYS D 46 -1 N ILE D 41 O ILE D 89 SHEET 5 AA3 6 ASP D 64 LEU D 69 -1 O PHE D 66 N HIS D 42 SHEET 6 AA3 6 VAL D 110 ASN D 112 -1 O ALA D 111 N ILE D 65 SHEET 1 AA4 4 GLY D 30 GLU D 34 0 SHEET 2 AA4 4 GLN D 73 ALA D 78 -1 O VAL D 74 N TYR D 33 SHEET 3 AA4 4 TYR D 48 PHE D 53 -1 N LYS D 52 O GLU D 75 SHEET 4 AA4 4 LYS D 56 LYS D 61 -1 O LEU D 60 N GLY D 49 SHEET 1 AA5 5 ASN B 16 GLN B 24 0 SHEET 2 AA5 5 GLU B 85 SER B 92 -1 O GLY B 90 N GLU B 19 SHEET 3 AA5 5 ALA B 39 LYS B 46 -1 N TYR B 43 O TYR B 87 SHEET 4 AA5 5 ASP B 64 LEU B 69 -1 O ASP B 64 N VAL B 44 SHEET 5 AA5 5 VAL B 110 ASN B 112 -1 O ALA B 111 N ILE B 65 SHEET 1 AA6 4 GLY B 30 GLU B 34 0 SHEET 2 AA6 4 GLN B 73 ALA B 78 -1 O VAL B 74 N TYR B 33 SHEET 3 AA6 4 TYR B 48 PHE B 53 -1 N LYS B 52 O GLU B 75 SHEET 4 AA6 4 LYS B 56 LYS B 61 -1 O LEU B 60 N GLY B 49 SHEET 1 AA7 6 LEU C 4 LYS C 7 0 SHEET 2 AA7 6 ASN C 16 GLN C 24 -1 O CYS C 20 N LYS C 6 SHEET 3 AA7 6 GLU C 85 SER C 92 -1 O GLY C 90 N GLU C 19 SHEET 4 AA7 6 ALA C 39 LYS C 46 -1 N TYR C 43 O TYR C 87 SHEET 5 AA7 6 ASP C 64 LEU C 69 -1 O PHE C 66 N HIS C 42 SHEET 6 AA7 6 VAL C 110 ASN C 112 -1 O ALA C 111 N ILE C 65 SHEET 1 AA8 4 GLY C 30 GLU C 34 0 SHEET 2 AA8 4 GLN C 73 ALA C 78 -1 O VAL C 74 N TYR C 33 SHEET 3 AA8 4 TYR C 48 PHE C 53 -1 N LYS C 52 O GLU C 75 SHEET 4 AA8 4 LYS C 56 LYS C 61 -1 O LEU C 60 N GLY C 49 LINK O4 BGC E 1 C1 GAL E 2 1555 1555 1.44 CRYST1 68.429 40.482 261.721 90.00 90.33 90.00 I 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014614 0.000000 0.000085 0.00000 SCALE2 0.000000 0.024702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003821 0.00000