HEADER TRANSFERASE 08-FEB-19 6NXJ TITLE FLAVIN TRANSFERASE APBE FROM VIBRIO CHOLERAE, H257G MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAD:PROTEIN FMN TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FLAVIN TRANSFERASE; COMPND 5 EC: 2.7.1.180; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: APBE, C9J66_08705, EN12_11145, ERS013140_01021, SOURCE 5 ERS013173_02114, ERS013193_02472, ERS013199_02400, ERS013202_01888; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD/HISB KEYWDS APBE, FLAVIN TRANSFERASE, FAD, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,X.FANG,S.CHAKRAVARTHY,O.JUAREZ,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 11-OCT-23 6NXJ 1 LINK REVDAT 3 18-DEC-19 6NXJ 1 REMARK REVDAT 2 25-SEP-19 6NXJ 1 JRNL REVDAT 1 13-MAR-19 6NXJ 0 JRNL AUTH X.FANG,J.OSIPIUK,S.CHAKRAVARTHY,M.YUAN,W.M.MENZER,D.NISSEN, JRNL AUTH 2 P.LIANG,D.A.RABA,K.TUZ,A.J.HOWARD,A.JOACHIMIAK,D.D.L.MINH, JRNL AUTH 3 O.JUAREZ JRNL TITL CONSERVED RESIDUE HIS-257 OFVIBRIO CHOLERAEFLAVIN JRNL TITL 2 TRANSFERASE APBE PLAYS A CRITICAL ROLE IN SUBSTRATE BINDING JRNL TITL 3 AND CATALYSIS. JRNL REF J.BIOL.CHEM. V. 294 13800 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31350338 JRNL DOI 10.1074/JBC.RA119.008261 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 51037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2661 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3650 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.42000 REMARK 3 B22 (A**2) : -2.19000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.472 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4847 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4465 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6613 ; 1.569 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10395 ; 1.346 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 609 ; 6.918 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;34.597 ;23.251 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 817 ;14.886 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.568 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 665 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5415 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 921 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 502 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2886 0.1866 12.9313 REMARK 3 T TENSOR REMARK 3 T11: 0.0405 T22: 0.0519 REMARK 3 T33: 0.0236 T12: -0.0094 REMARK 3 T13: 0.0163 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.1980 L22: 1.0130 REMARK 3 L33: 0.2187 L12: 0.0771 REMARK 3 L13: 0.1924 L23: 0.0354 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.0942 S13: 0.0123 REMARK 3 S21: 0.0157 S22: -0.0045 S23: -0.0716 REMARK 3 S31: 0.0177 S32: 0.0805 S33: 0.0104 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 502 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7111 -23.1415 41.9709 REMARK 3 T TENSOR REMARK 3 T11: 0.0489 T22: 0.0149 REMARK 3 T33: 0.0152 T12: 0.0262 REMARK 3 T13: 0.0093 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0996 L22: 0.9934 REMARK 3 L33: 0.5301 L12: -0.0642 REMARK 3 L13: -0.2008 L23: -0.1514 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: -0.0257 S13: 0.0064 REMARK 3 S21: 0.0260 S22: 0.0385 S23: -0.1042 REMARK 3 S31: 0.0423 S32: 0.0270 S33: 0.0022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6NXJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53702 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 36.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 3PND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 22% PEG 4000, REMARK 280 0.1 M HEPES BUFFER, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.96100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 17 REMARK 465 GLU A 18 REMARK 465 LYS A 19 REMARK 465 PRO A 20 REMARK 465 SER A 221 REMARK 465 VAL A 222 REMARK 465 ASP A 223 REMARK 465 GLN A 224 REMARK 465 ARG A 225 REMARK 465 SER A 333 REMARK 465 LYS A 334 REMARK 465 GLY A 335 REMARK 465 GLY A 336 REMARK 465 GLY A 337 REMARK 465 GLY A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 MET B 17 REMARK 465 GLU B 18 REMARK 465 LYS B 19 REMARK 465 PRO B 20 REMARK 465 SER B 221 REMARK 465 VAL B 222 REMARK 465 ASP B 223 REMARK 465 GLN B 224 REMARK 465 ARG B 225 REMARK 465 SER B 226 REMARK 465 ASP B 243 REMARK 465 TYR B 244 REMARK 465 ARG B 245 REMARK 465 ASN B 246 REMARK 465 TYR B 247 REMARK 465 PHE B 248 REMARK 465 GLU B 249 REMARK 465 GLN B 250 REMARK 465 ASP B 251 REMARK 465 GLY B 252 REMARK 465 VAL B 253 REMARK 465 ARG B 254 REMARK 465 TYR B 255 REMARK 465 SER B 256 REMARK 465 SER B 333 REMARK 465 LYS B 334 REMARK 465 GLY B 335 REMARK 465 GLY B 336 REMARK 465 GLY B 337 REMARK 465 GLY B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 465 HIS B 344 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 706 O HOH A 757 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 33 -150.22 -131.21 REMARK 500 ASN A 156 46.04 -87.42 REMARK 500 ILE A 172 -27.05 -147.23 REMARK 500 GLN A 250 160.19 -43.28 REMARK 500 THR B 33 -152.98 -137.93 REMARK 500 ASN B 156 50.07 -96.28 REMARK 500 ILE B 172 -28.05 -147.32 REMARK 500 TRP B 213 141.63 -39.52 REMARK 500 ASN B 268 56.97 -149.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 171 O REMARK 620 2 THR A 171 OG1 70.1 REMARK 620 3 ASP A 285 O 90.9 116.5 REMARK 620 4 ASP A 285 OD1 75.4 140.9 81.4 REMARK 620 5 THR A 289 OG1 138.3 72.5 89.7 145.5 REMARK 620 6 FAD A 500 O2A 111.8 100.0 142.1 76.0 92.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 200 OE1 REMARK 620 2 ASP A 285 OD1 99.4 REMARK 620 3 FAD A 500 O2A 171.3 86.8 REMARK 620 4 FAD A 500 O2P 81.5 178.8 92.2 REMARK 620 5 HOH A 615 O 90.5 84.2 96.2 96.6 REMARK 620 6 HOH A 638 O 83.5 83.8 91.2 95.5 165.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 171 O REMARK 620 2 THR B 171 OG1 72.9 REMARK 620 3 ASP B 285 O 95.5 123.3 REMARK 620 4 ASP B 285 OD1 76.4 140.9 83.0 REMARK 620 5 THR B 289 OG1 143.7 72.8 93.5 139.7 REMARK 620 6 FAD B 500 O2A 109.5 94.5 139.9 73.5 84.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 200 OE1 REMARK 620 2 ASP B 285 OD1 87.4 REMARK 620 3 FAD B 500 O2A 171.3 90.6 REMARK 620 4 FAD B 500 O2P 90.4 177.8 91.5 REMARK 620 5 HOH B 628 O 92.6 79.9 95.4 100.1 REMARK 620 6 HOH B 686 O 85.5 82.4 85.8 97.5 162.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NXI RELATED DB: PDB REMARK 900 WILD-TYPE PROTEIN APBE DBREF1 6NXJ A 18 334 UNP A0A0F4FI39_VIBCL DBREF2 6NXJ A A0A0F4FI39 18 334 DBREF1 6NXJ B 18 334 UNP A0A0F4FI39_VIBCL DBREF2 6NXJ B A0A0F4FI39 18 334 SEQADV 6NXJ MET A 17 UNP A0A0F4FI3 INITIATING METHIONINE SEQADV 6NXJ GLY A 257 UNP A0A0F4FI3 HIS 257 ENGINEERED MUTATION SEQADV 6NXJ GLY A 335 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ GLY A 336 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ GLY A 337 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ GLY A 338 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ HIS A 339 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ HIS A 340 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ HIS A 341 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ HIS A 342 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ HIS A 343 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ HIS A 344 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ MET B 17 UNP A0A0F4FI3 INITIATING METHIONINE SEQADV 6NXJ GLY B 257 UNP A0A0F4FI3 HIS 257 ENGINEERED MUTATION SEQADV 6NXJ GLY B 335 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ GLY B 336 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ GLY B 337 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ GLY B 338 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ HIS B 339 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ HIS B 340 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ HIS B 341 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ HIS B 342 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ HIS B 343 UNP A0A0F4FI3 EXPRESSION TAG SEQADV 6NXJ HIS B 344 UNP A0A0F4FI3 EXPRESSION TAG SEQRES 1 A 328 MET GLU LYS PRO ALA GLU GLN VAL HIS LEU SER GLY PRO SEQRES 2 A 328 THR MET GLY THR THR TYR ASN ILE LYS TYR ILE GLN GLN SEQRES 3 A 328 PRO GLY ILE ALA ASP SER LYS THR LEU GLN THR GLU ILE SEQRES 4 A 328 ASP ARG LEU LEU GLU GLU VAL ASN ASP GLN MET SER THR SEQRES 5 A 328 TYR ARG LYS ASP SER GLU LEU SER ARG PHE ASN GLN HIS SEQRES 6 A 328 THR SER SER GLU PRO PHE ALA VAL SER THR GLN THR LEU SEQRES 7 A 328 THR VAL VAL LYS GLU ALA ILE ARG LEU ASN GLY LEU THR SEQRES 8 A 328 GLU GLY ALA LEU ASP VAL THR VAL GLY PRO LEU VAL ASN SEQRES 9 A 328 LEU TRP GLY PHE GLY PRO GLU ALA ARG PRO ASP VAL VAL SEQRES 10 A 328 PRO THR ASP GLU GLU LEU ASN ALA ARG ARG ALA ILE THR SEQRES 11 A 328 GLY ILE GLU HIS LEU THR ILE GLU GLY ASN THR LEU SER SEQRES 12 A 328 LYS ASP ILE PRO GLU LEU TYR VAL ASP LEU SER THR ILE SEQRES 13 A 328 ALA LYS GLY TRP GLY VAL ASP VAL VAL ALA ASP TYR LEU SEQRES 14 A 328 GLN SER GLN GLY ILE GLU ASN TYR MET VAL GLU ILE GLY SEQRES 15 A 328 GLY GLU ILE ARG LEU LYS GLY LEU ASN ARG ASP GLY VAL SEQRES 16 A 328 PRO TRP ARG ILE ALA ILE GLU LYS PRO SER VAL ASP GLN SEQRES 17 A 328 ARG SER VAL GLN GLU ILE ILE GLU PRO GLY ASP TYR ALA SEQRES 18 A 328 ILE ALA THR SER GLY ASP TYR ARG ASN TYR PHE GLU GLN SEQRES 19 A 328 ASP GLY VAL ARG TYR SER GLY ILE ILE ASP PRO THR THR SEQRES 20 A 328 GLY ARG PRO ILE ASN ASN ARG VAL VAL SER VAL THR VAL SEQRES 21 A 328 LEU ASP LYS SER CYS MET THR ALA ASP GLY LEU ALA THR SEQRES 22 A 328 GLY LEU MET VAL MET GLY GLU GLU ARG GLY MET ALA VAL SEQRES 23 A 328 ALA GLU ALA ASN GLN ILE PRO VAL LEU MET ILE VAL LYS SEQRES 24 A 328 THR ASP ASP GLY PHE LYS GLU TYR ALA SER SER SER PHE SEQRES 25 A 328 LYS PRO PHE LEU SER LYS GLY GLY GLY GLY HIS HIS HIS SEQRES 26 A 328 HIS HIS HIS SEQRES 1 B 328 MET GLU LYS PRO ALA GLU GLN VAL HIS LEU SER GLY PRO SEQRES 2 B 328 THR MET GLY THR THR TYR ASN ILE LYS TYR ILE GLN GLN SEQRES 3 B 328 PRO GLY ILE ALA ASP SER LYS THR LEU GLN THR GLU ILE SEQRES 4 B 328 ASP ARG LEU LEU GLU GLU VAL ASN ASP GLN MET SER THR SEQRES 5 B 328 TYR ARG LYS ASP SER GLU LEU SER ARG PHE ASN GLN HIS SEQRES 6 B 328 THR SER SER GLU PRO PHE ALA VAL SER THR GLN THR LEU SEQRES 7 B 328 THR VAL VAL LYS GLU ALA ILE ARG LEU ASN GLY LEU THR SEQRES 8 B 328 GLU GLY ALA LEU ASP VAL THR VAL GLY PRO LEU VAL ASN SEQRES 9 B 328 LEU TRP GLY PHE GLY PRO GLU ALA ARG PRO ASP VAL VAL SEQRES 10 B 328 PRO THR ASP GLU GLU LEU ASN ALA ARG ARG ALA ILE THR SEQRES 11 B 328 GLY ILE GLU HIS LEU THR ILE GLU GLY ASN THR LEU SER SEQRES 12 B 328 LYS ASP ILE PRO GLU LEU TYR VAL ASP LEU SER THR ILE SEQRES 13 B 328 ALA LYS GLY TRP GLY VAL ASP VAL VAL ALA ASP TYR LEU SEQRES 14 B 328 GLN SER GLN GLY ILE GLU ASN TYR MET VAL GLU ILE GLY SEQRES 15 B 328 GLY GLU ILE ARG LEU LYS GLY LEU ASN ARG ASP GLY VAL SEQRES 16 B 328 PRO TRP ARG ILE ALA ILE GLU LYS PRO SER VAL ASP GLN SEQRES 17 B 328 ARG SER VAL GLN GLU ILE ILE GLU PRO GLY ASP TYR ALA SEQRES 18 B 328 ILE ALA THR SER GLY ASP TYR ARG ASN TYR PHE GLU GLN SEQRES 19 B 328 ASP GLY VAL ARG TYR SER GLY ILE ILE ASP PRO THR THR SEQRES 20 B 328 GLY ARG PRO ILE ASN ASN ARG VAL VAL SER VAL THR VAL SEQRES 21 B 328 LEU ASP LYS SER CYS MET THR ALA ASP GLY LEU ALA THR SEQRES 22 B 328 GLY LEU MET VAL MET GLY GLU GLU ARG GLY MET ALA VAL SEQRES 23 B 328 ALA GLU ALA ASN GLN ILE PRO VAL LEU MET ILE VAL LYS SEQRES 24 B 328 THR ASP ASP GLY PHE LYS GLU TYR ALA SER SER SER PHE SEQRES 25 B 328 LYS PRO PHE LEU SER LYS GLY GLY GLY GLY HIS HIS HIS SEQRES 26 B 328 HIS HIS HIS HET FAD A 500 53 HET MG A 501 1 HET MG A 502 1 HET FAD B 500 53 HET MG B 501 1 HET MG B 502 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MG MAGNESIUM ION FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 MG 4(MG 2+) FORMUL 9 HOH *334(H2 O) HELIX 1 AA1 ASP A 47 SER A 67 1 21 HELIX 2 AA2 SER A 73 HIS A 81 1 9 HELIX 3 AA3 SER A 90 THR A 107 1 18 HELIX 4 AA4 ASP A 112 THR A 114 5 3 HELIX 5 AA5 VAL A 115 TRP A 122 1 8 HELIX 6 AA6 THR A 135 ALA A 144 1 10 HELIX 7 AA7 ILE A 145 THR A 146 5 2 HELIX 8 AA8 GLY A 147 GLU A 149 5 3 HELIX 9 AA9 ILE A 172 GLN A 188 1 17 HELIX 10 AB1 ASP A 243 GLU A 249 5 7 HELIX 11 AB2 SER A 280 GLY A 295 1 16 HELIX 12 AB3 GLY A 295 ASN A 306 1 12 HELIX 13 AB4 PHE A 328 LEU A 332 5 5 HELIX 14 AB5 ASP B 47 SER B 67 1 21 HELIX 15 AB6 SER B 73 HIS B 81 1 9 HELIX 16 AB7 SER B 90 THR B 107 1 18 HELIX 17 AB8 ASP B 112 THR B 114 5 3 HELIX 18 AB9 VAL B 115 TRP B 122 1 8 HELIX 19 AC1 THR B 135 ALA B 144 1 10 HELIX 20 AC2 ILE B 145 THR B 146 5 2 HELIX 21 AC3 GLY B 147 GLU B 149 5 3 HELIX 22 AC4 ILE B 172 GLN B 188 1 17 HELIX 23 AC5 SER B 280 GLN B 307 1 28 HELIX 24 AC6 SER B 326 LEU B 332 5 7 SHEET 1 AA1 8 GLN A 23 THR A 30 0 SHEET 2 AA1 8 THR A 33 ILE A 40 -1 O ILE A 37 N LEU A 26 SHEET 3 AA1 8 TYR A 193 ILE A 197 -1 O GLU A 196 N ASN A 36 SHEET 4 AA1 8 GLU A 200 LYS A 204 -1 O ARG A 202 N VAL A 195 SHEET 5 AA1 8 TYR A 236 SER A 241 -1 O ILE A 238 N ILE A 201 SHEET 6 AA1 8 VAL A 271 ASP A 278 -1 O VAL A 276 N ALA A 239 SHEET 7 AA1 8 VAL A 310 LYS A 315 -1 O LEU A 311 N THR A 275 SHEET 8 AA1 8 PHE A 320 ALA A 324 -1 O TYR A 323 N MET A 312 SHEET 1 AA2 3 PHE A 87 ALA A 88 0 SHEET 2 AA2 3 THR A 157 LYS A 160 -1 O LEU A 158 N PHE A 87 SHEET 3 AA2 3 LEU A 151 ILE A 153 -1 N THR A 152 O SER A 159 SHEET 1 AA3 2 ILE A 215 LYS A 219 0 SHEET 2 AA3 2 VAL A 227 ILE A 231 -1 O GLU A 229 N ILE A 217 SHEET 1 AA4 8 GLN B 23 THR B 30 0 SHEET 2 AA4 8 THR B 33 ILE B 40 -1 O ILE B 37 N LEU B 26 SHEET 3 AA4 8 TYR B 193 ILE B 197 -1 O GLU B 196 N ASN B 36 SHEET 4 AA4 8 GLU B 200 LYS B 204 -1 O ARG B 202 N VAL B 195 SHEET 5 AA4 8 ALA B 237 SER B 241 -1 O ILE B 238 N ILE B 201 SHEET 6 AA4 8 VAL B 271 ASP B 278 -1 O ASP B 278 N ALA B 237 SHEET 7 AA4 8 VAL B 310 THR B 316 -1 O ILE B 313 N VAL B 272 SHEET 8 AA4 8 GLY B 319 ALA B 324 -1 O LYS B 321 N VAL B 314 SHEET 1 AA5 3 PHE B 87 ALA B 88 0 SHEET 2 AA5 3 THR B 157 LYS B 160 -1 O LEU B 158 N PHE B 87 SHEET 3 AA5 3 LEU B 151 GLU B 154 -1 N THR B 152 O SER B 159 SHEET 1 AA6 2 ILE B 215 GLU B 218 0 SHEET 2 AA6 2 GLN B 228 ILE B 231 -1 O ILE B 231 N ILE B 215 SHEET 1 AA7 2 ILE B 259 ASP B 260 0 SHEET 2 AA7 2 ARG B 265 PRO B 266 -1 O ARG B 265 N ASP B 260 LINK O THR A 171 MG MG A 501 1555 1555 2.53 LINK OG1 THR A 171 MG MG A 501 1555 1555 2.53 LINK OE1 GLU A 200 MG MG A 502 1555 1555 2.23 LINK O ASP A 285 MG MG A 501 1555 1555 2.33 LINK OD1 ASP A 285 MG MG A 501 1555 1555 2.35 LINK OD1 ASP A 285 MG MG A 502 1555 1555 2.15 LINK OG1 THR A 289 MG MG A 501 1555 1555 2.34 LINK O2A FAD A 500 MG MG A 501 1555 1555 2.23 LINK O2A FAD A 500 MG MG A 502 1555 1555 1.96 LINK O2P FAD A 500 MG MG A 502 1555 1555 1.96 LINK MG MG A 502 O HOH A 615 1555 1555 2.13 LINK MG MG A 502 O HOH A 638 1555 1555 2.15 LINK O THR B 171 MG MG B 501 1555 1555 2.34 LINK OG1 THR B 171 MG MG B 501 1555 1555 2.57 LINK OE1 GLU B 200 MG MG B 502 1555 1555 2.15 LINK O ASP B 285 MG MG B 501 1555 1555 2.28 LINK OD1 ASP B 285 MG MG B 501 1555 1555 2.64 LINK OD1 ASP B 285 MG MG B 502 1555 1555 2.24 LINK OG1 THR B 289 MG MG B 501 1555 1555 2.35 LINK O2A FAD B 500 MG MG B 501 1555 1555 2.41 LINK O2A FAD B 500 MG MG B 502 1555 1555 2.02 LINK O2P FAD B 500 MG MG B 502 1555 1555 1.98 LINK MG MG B 502 O HOH B 628 1555 1555 2.19 LINK MG MG B 502 O HOH B 686 1555 1555 2.21 SITE 1 AC1 30 MET A 31 ASN A 63 SER A 67 TYR A 69 SITE 2 AC1 30 ALA A 110 LEU A 111 ASP A 112 VAL A 115 SITE 3 AC1 30 VAL A 119 ASP A 168 SER A 170 THR A 171 SITE 4 AC1 30 LYS A 174 GLU A 200 SER A 241 GLY A 257 SITE 5 AC1 30 ILE A 259 ASP A 285 THR A 289 MG A 501 SITE 6 AC1 30 MG A 502 HOH A 615 HOH A 616 HOH A 631 SITE 7 AC1 30 HOH A 638 HOH A 668 HOH A 689 HOH A 723 SITE 8 AC1 30 HOH A 749 HOH A 757 SITE 1 AC2 5 THR A 171 ASP A 285 THR A 289 FAD A 500 SITE 2 AC2 5 MG A 502 SITE 1 AC3 6 GLU A 200 ASP A 285 FAD A 500 MG A 501 SITE 2 AC3 6 HOH A 615 HOH A 638 SITE 1 AC4 27 MET B 31 ASN B 63 SER B 67 TYR B 69 SITE 2 AC4 27 ALA B 110 LEU B 111 ASP B 112 VAL B 115 SITE 3 AC4 27 VAL B 119 ASP B 168 SER B 170 THR B 171 SITE 4 AC4 27 LYS B 174 GLU B 200 SER B 241 GLY B 257 SITE 5 AC4 27 ILE B 258 ILE B 259 ASP B 285 THR B 289 SITE 6 AC4 27 MG B 501 MG B 502 HOH B 622 HOH B 642 SITE 7 AC4 27 HOH B 658 HOH B 686 HOH B 694 SITE 1 AC5 5 THR B 171 ASP B 285 THR B 289 FAD B 500 SITE 2 AC5 5 MG B 502 SITE 1 AC6 6 GLU B 200 ASP B 285 FAD B 500 MG B 501 SITE 2 AC6 6 HOH B 628 HOH B 686 CRYST1 49.161 71.922 104.569 90.00 93.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020341 0.000000 0.001170 0.00000 SCALE2 0.000000 0.013904 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009579 0.00000