HEADER ISOMERASE 09-FEB-19 6NXS TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA CYTOSOLIC TRIOSEPHOSPHATE TITLE 2 ISOMERASE C218Y MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE, CYTOSOLIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CTIMC, AT3G55440, T22E16.100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS TRIOSEPHOSPHATE ISOMERASE CRYSTAL STRUCTURE MUTANT DIMER REDOX KEYWDS 2 REGULATION, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.JIMENEZ-SANDOVAL,C.DIAZ-QUEZADA,A.TORRES-LARIOS,L.G.BRIEBA REVDAT 3 13-MAR-24 6NXS 1 REMARK REVDAT 2 02-SEP-20 6NXS 1 JRNL LINK REVDAT 1 12-FEB-20 6NXS 0 JRNL AUTH E.CASTRO-TORRES,P.JIMENEZ-SANDOVAL,S.ROMERO-ROMERO, JRNL AUTH 2 A.FUENTES-PASCACIO,L.M.LOPEZ-CASTILLO,C.DIAZ-QUEZADA, JRNL AUTH 3 D.A.FERNANDEZ-VELASCO,A.TORRES-LARIOS,L.G.BRIEBA JRNL TITL STRUCTURAL BASIS FOR THE MODULATION OF PLANT CYTOSOLIC JRNL TITL 2 TRIOSEPHOSPHATE ISOMERASE ACTIVITY BY MIMICRY OF REDOX-BASED JRNL TITL 3 MODIFICATIONS. JRNL REF PLANT J. V. 99 950 2019 JRNL REFN ESSN 1365-313X JRNL PMID 31034710 JRNL DOI 10.1111/TPJ.14375 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 88995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4834 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6417 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 387 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3699 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 432 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.56000 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.255 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3823 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3559 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5218 ; 1.808 ; 1.622 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8216 ; 1.506 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 507 ; 6.072 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;32.334 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 596 ;10.305 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.445 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4391 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 781 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6NXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93845 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 68.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE HYDRATE 0.1M REMARK 280 SODIUM CACODYLATE TRIHYDRATE 6.5 18 % W/V POLYETHYLENE GLYCOL 8, REMARK 280 000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.60550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 251 REMARK 465 LYS A 252 REMARK 465 SER A 253 REMARK 465 ALA A 254 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 VAL B 250 REMARK 465 LYS B 251 REMARK 465 LYS B 252 REMARK 465 SER B 253 REMARK 465 ALA B 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CE NZ REMARK 470 LYS A 22 CD CE NZ REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 MET A 141 CG SD CE REMARK 470 LYS A 175 CD CE NZ REMARK 470 LYS A 195 CD CE NZ REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 LYS A 238 CE NZ REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 VAL A 250 CG1 CG2 REMARK 470 GLU B 18 CD OE1 OE2 REMARK 470 LYS B 21 CD CE NZ REMARK 470 LYS B 22 CD CE NZ REMARK 470 LYS B 71 NZ REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 GLU B 184 CD OE1 OE2 REMARK 470 LYS B 195 CD CE NZ REMARK 470 LYS B 238 CE NZ REMARK 470 GLU B 249 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 82 CD GLU A 82 OE1 0.070 REMARK 500 GLU A 108 CD GLU A 108 OE1 0.078 REMARK 500 GLU B 82 CD GLU B 82 OE1 0.101 REMARK 500 GLU B 108 CD GLU B 108 OE1 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 -154.65 63.92 REMARK 500 VAL A 197 -72.02 -124.61 REMARK 500 LYS B 12 -152.21 60.63 REMARK 500 VAL B 197 -73.55 -121.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 613 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 222 O REMARK 620 2 GLN A 224 O 100.7 REMARK 620 3 VAL A 227 O 92.6 92.5 REMARK 620 4 HOH A 445 O 165.9 86.5 74.9 REMARK 620 5 HOH A 570 O 89.7 166.6 95.5 85.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 101 O REMARK 620 2 ASN B 104 OD1 85.7 REMARK 620 3 HOH B 437 O 78.2 79.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 187 OD1 REMARK 620 2 ASP B 226 OD2 96.4 REMARK 620 3 HOH B 403 O 69.0 98.4 REMARK 620 4 HOH B 528 O 149.2 81.2 141.8 REMARK 620 5 HOH B 543 O 82.8 167.8 92.6 93.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 222 O REMARK 620 2 GLN B 224 O 99.0 REMARK 620 3 VAL B 227 O 92.8 93.2 REMARK 620 4 HOH B 504 O 164.4 90.7 74.4 REMARK 620 5 HOH B 561 O 87.7 88.3 178.4 104.8 REMARK 620 6 HOH B 566 O 88.5 168.1 95.6 83.9 82.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 303 DBREF 6NXS A 1 254 UNP P48491 TPIS_ARATH 1 254 DBREF 6NXS B 1 254 UNP P48491 TPIS_ARATH 1 254 SEQADV 6NXS GLY A -2 UNP P48491 EXPRESSION TAG SEQADV 6NXS PRO A -1 UNP P48491 EXPRESSION TAG SEQADV 6NXS HIS A 0 UNP P48491 EXPRESSION TAG SEQADV 6NXS TYR A 218 UNP P48491 CYS 218 ENGINEERED MUTATION SEQADV 6NXS GLY B -2 UNP P48491 EXPRESSION TAG SEQADV 6NXS PRO B -1 UNP P48491 EXPRESSION TAG SEQADV 6NXS HIS B 0 UNP P48491 EXPRESSION TAG SEQADV 6NXS TYR B 218 UNP P48491 CYS 218 ENGINEERED MUTATION SEQRES 1 A 257 GLY PRO HIS MET ALA ARG LYS PHE PHE VAL GLY GLY ASN SEQRES 2 A 257 TRP LYS CYS ASN GLY THR ALA GLU GLU VAL LYS LYS ILE SEQRES 3 A 257 VAL ASN THR LEU ASN GLU ALA GLN VAL PRO SER GLN ASP SEQRES 4 A 257 VAL VAL GLU VAL VAL VAL SER PRO PRO TYR VAL PHE LEU SEQRES 5 A 257 PRO LEU VAL LYS SER THR LEU ARG SER ASP PHE PHE VAL SEQRES 6 A 257 ALA ALA GLN ASN CYS TRP VAL LYS LYS GLY GLY ALA PHE SEQRES 7 A 257 THR GLY GLU VAL SER ALA GLU MET LEU VAL ASN LEU ASP SEQRES 8 A 257 ILE PRO TRP VAL ILE LEU GLY HIS SER GLU ARG ARG ALA SEQRES 9 A 257 ILE LEU ASN GLU SER SER GLU PHE VAL GLY ASP LYS VAL SEQRES 10 A 257 ALA TYR ALA LEU ALA GLN GLY LEU LYS VAL ILE ALA CYS SEQRES 11 A 257 VAL GLY GLU THR LEU GLU GLU ARG GLU ALA GLY SER THR SEQRES 12 A 257 MET ASP VAL VAL ALA ALA GLN THR LYS ALA ILE ALA ASP SEQRES 13 A 257 ARG VAL THR ASN TRP SER ASN VAL VAL ILE ALA TYR GLU SEQRES 14 A 257 PRO VAL TRP ALA ILE GLY THR GLY LYS VAL ALA SER PRO SEQRES 15 A 257 ALA GLN ALA GLN GLU VAL HIS ASP GLU LEU ARG LYS TRP SEQRES 16 A 257 LEU ALA LYS ASN VAL SER ALA ASP VAL ALA ALA THR THR SEQRES 17 A 257 ARG ILE ILE TYR GLY GLY SER VAL ASN GLY GLY ASN TYR SEQRES 18 A 257 LYS GLU LEU GLY GLY GLN ALA ASP VAL ASP GLY PHE LEU SEQRES 19 A 257 VAL GLY GLY ALA SER LEU LYS PRO GLU PHE ILE ASP ILE SEQRES 20 A 257 ILE LYS ALA ALA GLU VAL LYS LYS SER ALA SEQRES 1 B 257 GLY PRO HIS MET ALA ARG LYS PHE PHE VAL GLY GLY ASN SEQRES 2 B 257 TRP LYS CYS ASN GLY THR ALA GLU GLU VAL LYS LYS ILE SEQRES 3 B 257 VAL ASN THR LEU ASN GLU ALA GLN VAL PRO SER GLN ASP SEQRES 4 B 257 VAL VAL GLU VAL VAL VAL SER PRO PRO TYR VAL PHE LEU SEQRES 5 B 257 PRO LEU VAL LYS SER THR LEU ARG SER ASP PHE PHE VAL SEQRES 6 B 257 ALA ALA GLN ASN CYS TRP VAL LYS LYS GLY GLY ALA PHE SEQRES 7 B 257 THR GLY GLU VAL SER ALA GLU MET LEU VAL ASN LEU ASP SEQRES 8 B 257 ILE PRO TRP VAL ILE LEU GLY HIS SER GLU ARG ARG ALA SEQRES 9 B 257 ILE LEU ASN GLU SER SER GLU PHE VAL GLY ASP LYS VAL SEQRES 10 B 257 ALA TYR ALA LEU ALA GLN GLY LEU LYS VAL ILE ALA CYS SEQRES 11 B 257 VAL GLY GLU THR LEU GLU GLU ARG GLU ALA GLY SER THR SEQRES 12 B 257 MET ASP VAL VAL ALA ALA GLN THR LYS ALA ILE ALA ASP SEQRES 13 B 257 ARG VAL THR ASN TRP SER ASN VAL VAL ILE ALA TYR GLU SEQRES 14 B 257 PRO VAL TRP ALA ILE GLY THR GLY LYS VAL ALA SER PRO SEQRES 15 B 257 ALA GLN ALA GLN GLU VAL HIS ASP GLU LEU ARG LYS TRP SEQRES 16 B 257 LEU ALA LYS ASN VAL SER ALA ASP VAL ALA ALA THR THR SEQRES 17 B 257 ARG ILE ILE TYR GLY GLY SER VAL ASN GLY GLY ASN TYR SEQRES 18 B 257 LYS GLU LEU GLY GLY GLN ALA ASP VAL ASP GLY PHE LEU SEQRES 19 B 257 VAL GLY GLY ALA SER LEU LYS PRO GLU PHE ILE ASP ILE SEQRES 20 B 257 ILE LYS ALA ALA GLU VAL LYS LYS SER ALA HET NA A 301 1 HET NA B 301 1 HET NA B 302 1 HET NA B 303 1 HETNAM NA SODIUM ION FORMUL 3 NA 4(NA 1+) FORMUL 7 HOH *432(H2 O) HELIX 1 AA1 THR A 16 ALA A 30 1 15 HELIX 2 AA2 PRO A 45 VAL A 47 5 3 HELIX 3 AA3 PHE A 48 LEU A 56 1 9 HELIX 4 AA4 SER A 80 LEU A 87 1 8 HELIX 5 AA5 HIS A 96 ILE A 102 1 7 HELIX 6 AA6 SER A 106 GLN A 120 1 15 HELIX 7 AA7 THR A 131 ALA A 137 1 7 HELIX 8 AA8 SER A 139 ASP A 153 1 15 HELIX 9 AA9 PRO A 167 ILE A 171 5 5 HELIX 10 AB1 SER A 178 VAL A 197 1 20 HELIX 11 AB2 SER A 198 THR A 205 1 8 HELIX 12 AB3 ASN A 217 GLY A 223 1 7 HELIX 13 AB4 GLY A 233 LYS A 238 5 6 HELIX 14 AB5 PRO A 239 LYS A 246 1 8 HELIX 15 AB6 ALA A 247 GLU A 249 5 3 HELIX 16 AB7 THR B 16 ALA B 30 1 15 HELIX 17 AB8 PRO B 45 VAL B 47 5 3 HELIX 18 AB9 PHE B 48 LEU B 56 1 9 HELIX 19 AC1 SER B 80 LEU B 87 1 8 HELIX 20 AC2 HIS B 96 ILE B 102 1 7 HELIX 21 AC3 SER B 106 GLN B 120 1 15 HELIX 22 AC4 THR B 131 ALA B 137 1 7 HELIX 23 AC5 SER B 139 ASP B 153 1 15 HELIX 24 AC6 PRO B 167 ILE B 171 5 5 HELIX 25 AC7 SER B 178 VAL B 197 1 20 HELIX 26 AC8 SER B 198 THR B 205 1 8 HELIX 27 AC9 ASN B 217 GLY B 223 1 7 HELIX 28 AD1 GLY B 233 LYS B 238 5 6 HELIX 29 AD2 PRO B 239 LYS B 246 1 8 HELIX 30 AD3 ALA B 247 GLU B 249 5 3 SHEET 1 AA1 9 PHE A 5 ASN A 10 0 SHEET 2 AA1 9 VAL A 38 SER A 43 1 O SER A 43 N GLY A 9 SHEET 3 AA1 9 PHE A 61 ALA A 64 1 O PHE A 61 N VAL A 42 SHEET 4 AA1 9 TRP A 91 LEU A 94 1 O ILE A 93 N ALA A 64 SHEET 5 AA1 9 LYS A 123 VAL A 128 1 O ILE A 125 N LEU A 94 SHEET 6 AA1 9 VAL A 161 TYR A 165 1 O VAL A 162 N ALA A 126 SHEET 7 AA1 9 ILE A 207 TYR A 209 1 O ILE A 208 N ILE A 163 SHEET 8 AA1 9 GLY A 229 VAL A 232 1 O GLY A 229 N TYR A 209 SHEET 9 AA1 9 PHE A 5 ASN A 10 1 N ASN A 10 O VAL A 232 SHEET 1 AA2 9 PHE B 5 ASN B 10 0 SHEET 2 AA2 9 VAL B 38 SER B 43 1 O SER B 43 N GLY B 9 SHEET 3 AA2 9 PHE B 61 ALA B 64 1 O PHE B 61 N VAL B 42 SHEET 4 AA2 9 TRP B 91 LEU B 94 1 O ILE B 93 N ALA B 64 SHEET 5 AA2 9 LYS B 123 VAL B 128 1 O CYS B 127 N LEU B 94 SHEET 6 AA2 9 VAL B 161 TYR B 165 1 O ALA B 164 N ALA B 126 SHEET 7 AA2 9 ILE B 207 TYR B 209 1 O ILE B 208 N ILE B 163 SHEET 8 AA2 9 GLY B 229 VAL B 232 1 O GLY B 229 N TYR B 209 SHEET 9 AA2 9 PHE B 5 ASN B 10 1 N GLY B 8 O VAL B 232 LINK O GLY A 222 NA NA A 301 1555 1555 2.39 LINK O GLN A 224 NA NA A 301 1555 1555 2.44 LINK O VAL A 227 NA NA A 301 1555 1555 2.36 LINK NA NA A 301 O HOH A 445 1555 1555 2.45 LINK NA NA A 301 O HOH A 570 1555 1555 2.22 LINK O ALA B 101 NA NA B 302 1555 1555 2.26 LINK OD1 ASN B 104 NA NA B 302 1555 1555 2.34 LINK OD1 ASP B 187 NA NA B 303 1555 1555 2.17 LINK O GLY B 222 NA NA B 301 1555 1555 2.41 LINK O GLN B 224 NA NA B 301 1555 1555 2.44 LINK OD2 ASP B 226 NA NA B 303 1555 1555 2.46 LINK O VAL B 227 NA NA B 301 1555 1555 2.35 LINK NA NA B 301 O HOH B 504 1555 1555 2.43 LINK NA NA B 301 O HOH B 561 1555 1555 2.33 LINK NA NA B 301 O HOH B 566 1555 1555 2.30 LINK NA NA B 302 O HOH B 437 1555 1555 1.97 LINK NA NA B 303 O HOH B 403 1555 1555 2.25 LINK NA NA B 303 O HOH B 528 1555 1555 2.04 LINK NA NA B 303 O HOH B 543 1555 1555 2.38 SITE 1 AC1 5 GLY A 222 GLN A 224 VAL A 227 HOH A 445 SITE 2 AC1 5 HOH A 570 SITE 1 AC2 6 GLY B 222 GLN B 224 VAL B 227 HOH B 504 SITE 2 AC2 6 HOH B 561 HOH B 566 SITE 1 AC3 3 ALA B 101 ASN B 104 HOH B 437 SITE 1 AC4 5 ASP B 187 ASP B 226 HOH B 403 HOH B 528 SITE 2 AC4 5 HOH B 543 CRYST1 47.380 97.211 68.148 90.00 91.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021106 0.000000 0.000708 0.00000 SCALE2 0.000000 0.010287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014682 0.00000