HEADER ISOMERASE 10-FEB-19 6NXY TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA CYTOSOLIC TRIOSEPHOSPHATE TITLE 2 ISOMERASE C218D MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE, CYTOSOLIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CTIMC, AT3G55440, T22E16.100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS TRIOSEPHOSPHATE ISOMERASE CRYSTAL STRUCTURE MUTANT DIMER REDOX KEYWDS 2 REGULATION, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.JIMENEZ-SANDOVAL,C.DIAZ-QUEZADA,A.TORRES-LARIOS,L.G.BRIEBA REVDAT 3 11-OCT-23 6NXY 1 REMARK REVDAT 2 02-SEP-20 6NXY 1 JRNL REVDAT 1 19-FEB-20 6NXY 0 JRNL AUTH E.CASTRO-TORRES,P.JIMENEZ-SANDOVAL,S.ROMERO-ROMERO, JRNL AUTH 2 A.FUENTES-PASCACIO,L.M.LOPEZ-CASTILLO,C.DIAZ-QUEZADA, JRNL AUTH 3 D.A.FERNANDEZ-VELASCO,A.TORRES-LARIOS,L.G.BRIEBA JRNL TITL STRUCTURAL BASIS FOR THE MODULATION OF PLANT CYTOSOLIC JRNL TITL 2 TRIOSEPHOSPHATE ISOMERASE ACTIVITY BY MIMICRY OF REDOX-BASED JRNL TITL 3 MODIFICATIONS. JRNL REF PLANT J. V. 99 950 2019 JRNL REFN ESSN 1365-313X JRNL PMID 31034710 JRNL DOI 10.1111/TPJ.14375 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 145501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 7211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9025 - 3.2621 1.00 4900 250 0.1643 0.1602 REMARK 3 2 3.2621 - 2.5893 1.00 4717 263 0.1797 0.1826 REMARK 3 3 2.5893 - 2.2621 1.00 4696 249 0.1743 0.1719 REMARK 3 4 2.2621 - 2.0552 1.00 4661 232 0.1585 0.1656 REMARK 3 5 2.0552 - 1.9079 1.00 4675 238 0.1562 0.1660 REMARK 3 6 1.9079 - 1.7954 1.00 4609 246 0.1635 0.1641 REMARK 3 7 1.7954 - 1.7055 1.00 4670 223 0.1609 0.1620 REMARK 3 8 1.7055 - 1.6313 1.00 4583 248 0.1576 0.1687 REMARK 3 9 1.6313 - 1.5685 1.00 4634 244 0.1503 0.1570 REMARK 3 10 1.5685 - 1.5144 1.00 4628 240 0.1460 0.1525 REMARK 3 11 1.5144 - 1.4670 1.00 4602 238 0.1525 0.1538 REMARK 3 12 1.4670 - 1.4251 1.00 4584 245 0.1549 0.1802 REMARK 3 13 1.4251 - 1.3875 1.00 4604 222 0.1584 0.1772 REMARK 3 14 1.3875 - 1.3537 1.00 4595 249 0.1650 0.1650 REMARK 3 15 1.3537 - 1.3229 1.00 4586 244 0.1640 0.1761 REMARK 3 16 1.3229 - 1.2948 1.00 4600 233 0.1630 0.1677 REMARK 3 17 1.2948 - 1.2689 1.00 4543 268 0.1610 0.1569 REMARK 3 18 1.2689 - 1.2449 1.00 4562 272 0.1644 0.1726 REMARK 3 19 1.2449 - 1.2227 1.00 4490 280 0.1635 0.1748 REMARK 3 20 1.2227 - 1.2020 1.00 4630 216 0.1659 0.1803 REMARK 3 21 1.2020 - 1.1826 1.00 4569 204 0.1627 0.1717 REMARK 3 22 1.1826 - 1.1644 1.00 4636 238 0.1637 0.1648 REMARK 3 23 1.1644 - 1.1472 1.00 4553 230 0.1644 0.1787 REMARK 3 24 1.1472 - 1.1311 1.00 4595 227 0.1662 0.1717 REMARK 3 25 1.1311 - 1.1158 1.00 4582 227 0.1698 0.1851 REMARK 3 26 1.1158 - 1.1013 1.00 4585 258 0.1809 0.1946 REMARK 3 27 1.1013 - 1.0875 1.00 4552 214 0.1902 0.2091 REMARK 3 28 1.0875 - 1.0744 1.00 4558 236 0.1889 0.2066 REMARK 3 29 1.0744 - 1.0619 1.00 4548 246 0.2001 0.2166 REMARK 3 30 1.0619 - 1.0500 0.99 4543 231 0.2128 0.2103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239654. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 145559 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 48.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OBT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE TRIHYDRATE 0.1M REMARK 280 TRIS HYDROCHLORIDE 8.5 30% W/V POLYETHYLENE GLYCOL 4,000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.87200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.87200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 19.49650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.74300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 19.49650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.74300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.87200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 19.49650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.74300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.87200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 19.49650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 81.74300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -38.99300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.87200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 681 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 252 REMARK 465 SER A 253 REMARK 465 ALA A 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 ILE A 171 CG1 CG2 CD1 REMARK 470 GLU A 184 CD OE1 OE2 REMARK 470 LYS A 191 NZ REMARK 470 LYS A 219 CD CE NZ REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 VAL A 250 CG1 CG2 REMARK 470 LYS A 251 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 421 O HOH A 631 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 569 O HOH A 668 1655 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 -153.31 58.77 REMARK 500 VAL A 197 -78.95 -120.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 738 DISTANCE = 5.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 222 O REMARK 620 2 GLN A 224 O 102.3 REMARK 620 3 VAL A 227 O 95.9 92.9 REMARK 620 4 HOH A 514 O 168.8 88.1 79.2 REMARK 620 5 HOH A 638 O 92.5 82.8 171.2 92.9 REMARK 620 6 HOH A 639 O 87.4 165.4 97.0 83.3 85.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 DBREF 6NXY A 1 254 UNP P48491 TPIS_ARATH 1 254 SEQADV 6NXY GLY A -2 UNP P48491 EXPRESSION TAG SEQADV 6NXY PRO A -1 UNP P48491 EXPRESSION TAG SEQADV 6NXY HIS A 0 UNP P48491 EXPRESSION TAG SEQADV 6NXY ASP A 218 UNP P48491 CYS 218 ENGINEERED MUTATION SEQRES 1 A 257 GLY PRO HIS MET ALA ARG LYS PHE PHE VAL GLY GLY ASN SEQRES 2 A 257 TRP LYS CYS ASN GLY THR ALA GLU GLU VAL LYS LYS ILE SEQRES 3 A 257 VAL ASN THR LEU ASN GLU ALA GLN VAL PRO SER GLN ASP SEQRES 4 A 257 VAL VAL GLU VAL VAL VAL SER PRO PRO TYR VAL PHE LEU SEQRES 5 A 257 PRO LEU VAL LYS SER THR LEU ARG SER ASP PHE PHE VAL SEQRES 6 A 257 ALA ALA GLN ASN CYS TRP VAL LYS LYS GLY GLY ALA PHE SEQRES 7 A 257 THR GLY GLU VAL SER ALA GLU MET LEU VAL ASN LEU ASP SEQRES 8 A 257 ILE PRO TRP VAL ILE LEU GLY HIS SER GLU ARG ARG ALA SEQRES 9 A 257 ILE LEU ASN GLU SER SER GLU PHE VAL GLY ASP LYS VAL SEQRES 10 A 257 ALA TYR ALA LEU ALA GLN GLY LEU LYS VAL ILE ALA CYS SEQRES 11 A 257 VAL GLY GLU THR LEU GLU GLU ARG GLU ALA GLY SER THR SEQRES 12 A 257 MET ASP VAL VAL ALA ALA GLN THR LYS ALA ILE ALA ASP SEQRES 13 A 257 ARG VAL THR ASN TRP SER ASN VAL VAL ILE ALA TYR GLU SEQRES 14 A 257 PRO VAL TRP ALA ILE GLY THR GLY LYS VAL ALA SER PRO SEQRES 15 A 257 ALA GLN ALA GLN GLU VAL HIS ASP GLU LEU ARG LYS TRP SEQRES 16 A 257 LEU ALA LYS ASN VAL SER ALA ASP VAL ALA ALA THR THR SEQRES 17 A 257 ARG ILE ILE TYR GLY GLY SER VAL ASN GLY GLY ASN ASP SEQRES 18 A 257 LYS GLU LEU GLY GLY GLN ALA ASP VAL ASP GLY PHE LEU SEQRES 19 A 257 VAL GLY GLY ALA SER LEU LYS PRO GLU PHE ILE ASP ILE SEQRES 20 A 257 ILE LYS ALA ALA GLU VAL LYS LYS SER ALA HET NA A 301 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *338(H2 O) HELIX 1 AA1 THR A 16 ALA A 30 1 15 HELIX 2 AA2 PRO A 45 VAL A 47 5 3 HELIX 3 AA3 PHE A 48 LEU A 56 1 9 HELIX 4 AA4 SER A 80 LEU A 87 1 8 HELIX 5 AA5 HIS A 96 ILE A 102 1 7 HELIX 6 AA6 SER A 106 GLY A 121 1 16 HELIX 7 AA7 THR A 131 ALA A 137 1 7 HELIX 8 AA8 SER A 139 ASP A 153 1 15 HELIX 9 AA9 SER A 178 VAL A 197 1 20 HELIX 10 AB1 SER A 198 THR A 205 1 8 HELIX 11 AB2 ASN A 217 GLY A 223 1 7 HELIX 12 AB3 GLY A 233 LYS A 238 5 6 HELIX 13 AB4 PRO A 239 ALA A 247 1 9 SHEET 1 AA1 9 PHE A 5 ASN A 10 0 SHEET 2 AA1 9 VAL A 38 SER A 43 1 O SER A 43 N GLY A 9 SHEET 3 AA1 9 PHE A 61 ALA A 64 1 O PHE A 61 N VAL A 42 SHEET 4 AA1 9 TRP A 91 LEU A 94 1 O ILE A 93 N ALA A 64 SHEET 5 AA1 9 LYS A 123 VAL A 128 1 O ILE A 125 N LEU A 94 SHEET 6 AA1 9 VAL A 161 TYR A 165 1 O VAL A 162 N ALA A 126 SHEET 7 AA1 9 ILE A 207 TYR A 209 1 O ILE A 208 N ILE A 163 SHEET 8 AA1 9 GLY A 229 VAL A 232 1 O GLY A 229 N TYR A 209 SHEET 9 AA1 9 PHE A 5 ASN A 10 1 N GLY A 8 O VAL A 232 LINK O GLY A 222 NA NA A 301 1555 1555 2.43 LINK O GLN A 224 NA NA A 301 1555 1555 2.40 LINK O VAL A 227 NA NA A 301 1555 1555 2.34 LINK NA NA A 301 O HOH A 514 1555 1555 2.51 LINK NA NA A 301 O HOH A 638 1555 1555 2.45 LINK NA NA A 301 O HOH A 639 1555 1555 2.39 SITE 1 AC1 6 GLY A 222 GLN A 224 VAL A 227 HOH A 514 SITE 2 AC1 6 HOH A 638 HOH A 639 CRYST1 38.993 163.486 97.744 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025646 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010231 0.00000