HEADER RNA BINDING PROTEIN/RNA 11-FEB-19 6NY5 TITLE CRYSTAL STRUCTURE OF THE PUM-HD DOMAIN OF S. POMBE PUF1 IN COMPLEX TITLE 2 WITH RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUMILIO DOMAIN-CONTAINING PROTEIN C56F2.08C; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PUM-HD DOMAIN (UNP RESIDUES 109-485); COMPND 5 SYNONYM: PUF1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(P*UP*UP*AP*AP*UP*AP*AP*CP*UP*UP*AP*AP*U)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: SPBC56F2.08C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 11 ORGANISM_COMMON: FISSION YEAST; SOURCE 12 ORGANISM_TAXID: 4896 KEYWDS PUF PROTEIN, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.QIU,T.M.T.HALL REVDAT 2 15-JAN-20 6NY5 1 JRNL REVDAT 1 03-JUL-19 6NY5 0 JRNL AUTH C.QIU,R.C.DUTCHER,D.F.PORTER,Y.ARAVA,M.WICKENS,T.M.T.HALL JRNL TITL DISTINCT RNA-BINDING MODULES IN A SINGLE PUF PROTEIN JRNL TITL 2 COOPERATE TO DETERMINE RNA SPECIFICITY. JRNL REF NUCLEIC ACIDS RES. V. 47 8770 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31294800 JRNL DOI 10.1093/NAR/GKZ583 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 27506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.7605 - 7.2103 0.99 1985 144 0.1708 0.2196 REMARK 3 2 7.2103 - 5.7330 0.99 1891 148 0.2161 0.2621 REMARK 3 3 5.7330 - 5.0112 0.98 1835 139 0.2101 0.2558 REMARK 3 4 5.0112 - 4.5544 0.96 1810 136 0.1786 0.2311 REMARK 3 5 4.5544 - 4.2287 0.97 1799 132 0.1786 0.2124 REMARK 3 6 4.2287 - 3.9798 0.96 1795 131 0.1952 0.2240 REMARK 3 7 3.9798 - 3.7808 0.96 1782 145 0.2230 0.2509 REMARK 3 8 3.7808 - 3.6164 0.97 1791 137 0.2395 0.2931 REMARK 3 9 3.6164 - 3.4774 0.97 1788 136 0.2461 0.3482 REMARK 3 10 3.4774 - 3.3575 0.98 1811 143 0.2733 0.3398 REMARK 3 11 3.3575 - 3.2526 0.98 1811 133 0.2893 0.4269 REMARK 3 12 3.2526 - 3.1597 0.99 1824 141 0.2735 0.3574 REMARK 3 13 3.1597 - 3.0766 1.00 1822 141 0.2847 0.3110 REMARK 3 14 3.0766 - 3.0016 0.99 1814 142 0.2873 0.3534 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 97 THROUGH 482) REMARK 3 ORIGIN FOR THE GROUP (A): 56.3664 68.8622 55.1365 REMARK 3 T TENSOR REMARK 3 T11: 0.4674 T22: 0.4644 REMARK 3 T33: 0.7526 T12: -0.1022 REMARK 3 T13: -0.0045 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 2.7695 L22: 0.8657 REMARK 3 L33: 2.8723 L12: -1.2645 REMARK 3 L13: 2.1169 L23: -0.6557 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: 0.0121 S13: -0.1065 REMARK 3 S21: -0.0534 S22: -0.0356 S23: 0.2065 REMARK 3 S31: 0.2096 S32: -0.3383 S33: 0.1131 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 97 THROUGH 478) REMARK 3 ORIGIN FOR THE GROUP (A): 111.7514 56.3073 37.2712 REMARK 3 T TENSOR REMARK 3 T11: 0.3994 T22: 0.7021 REMARK 3 T33: 0.4508 T12: 0.0417 REMARK 3 T13: 0.0080 T23: -0.0808 REMARK 3 L TENSOR REMARK 3 L11: 1.6503 L22: 2.4500 REMARK 3 L33: 3.4951 L12: -0.7481 REMARK 3 L13: 1.1083 L23: -0.0365 REMARK 3 S TENSOR REMARK 3 S11: 0.2115 S12: 0.4968 S13: -0.1811 REMARK 3 S21: -0.3451 S22: -0.2273 S23: 0.1232 REMARK 3 S31: 0.0701 S32: 0.1858 S33: 0.0413 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID -1 THROUGH 12) REMARK 3 ORIGIN FOR THE GROUP (A): 84.5815 57.3195 51.0845 REMARK 3 T TENSOR REMARK 3 T11: 0.7750 T22: 1.0049 REMARK 3 T33: 0.7961 T12: 0.0098 REMARK 3 T13: 0.0995 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 4.4458 L22: 0.5432 REMARK 3 L33: 1.3217 L12: -1.0074 REMARK 3 L13: 0.1093 L23: 0.3927 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: 1.5431 S13: 0.0208 REMARK 3 S21: -0.5856 S22: 0.0874 S23: 0.0997 REMARK 3 S31: -0.0722 S32: 0.7848 S33: -0.1642 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28120 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M MAGNESIUM SULFATE, 0.1 M MES, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 79.83850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 79.83850 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.76500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 79.83850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.88250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 79.83850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 161.64750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 79.83850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 161.64750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.83850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.88250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 79.83850 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 79.83850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 107.76500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 79.83850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 79.83850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 107.76500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 79.83850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 161.64750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 79.83850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 53.88250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.83850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 53.88250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 79.83850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 161.64750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 79.83850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 79.83850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 107.76500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 483 REMARK 465 SER A 484 REMARK 465 ILE A 485 REMARK 465 PRO B 154 REMARK 465 VAL B 155 REMARK 465 GLU B 156 REMARK 465 THR B 157 REMARK 465 LEU B 158 REMARK 465 ARG B 159 REMARK 465 SER B 160 REMARK 465 ARG B 161 REMARK 465 GLN B 162 REMARK 465 PRO B 442 REMARK 465 SER B 443 REMARK 465 ILE B 444 REMARK 465 GLY B 479 REMARK 465 MET B 480 REMARK 465 THR B 481 REMARK 465 SER B 482 REMARK 465 LYS B 483 REMARK 465 SER B 484 REMARK 465 ILE B 485 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 114 56.74 -101.33 REMARK 500 GLN A 124 10.54 -68.91 REMARK 500 GLU A 126 -126.61 61.35 REMARK 500 MET A 127 -179.50 61.47 REMARK 500 ASN A 144 94.87 -62.58 REMARK 500 LYS A 146 94.20 -67.86 REMARK 500 LYS A 289 165.23 66.70 REMARK 500 SER A 362 14.29 57.59 REMARK 500 GLU A 401 75.60 -118.97 REMARK 500 PHE A 414 77.35 -105.15 REMARK 500 VAL A 430 -44.40 -133.25 REMARK 500 SER A 443 7.56 -159.57 REMARK 500 PRO A 467 45.82 -84.52 REMARK 500 MET A 480 -79.09 55.21 REMARK 500 SER B 114 55.85 -103.90 REMARK 500 ASN B 144 95.32 -69.96 REMARK 500 LYS B 289 168.27 66.13 REMARK 500 ASP B 360 -70.58 -89.38 REMARK 500 GLU B 401 78.59 -117.42 REMARK 500 PHE B 414 73.37 -103.36 REMARK 500 LYS B 417 31.88 -151.03 REMARK 500 VAL B 430 -42.75 -134.94 REMARK 500 PRO B 467 46.35 -89.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 605 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C C 7 O2 REMARK 620 2 A C 10 OP1 71.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NWW RELATED DB: PDB DBREF 6NY5 A 109 485 UNP O60059 YG58_SCHPO 109 485 DBREF 6NY5 B 109 485 UNP O60059 YG58_SCHPO 109 485 DBREF 6NY5 C -1 12 PDB 6NY5 6NY5 -1 12 SEQADV 6NY5 SER A 97 UNP O60059 EXPRESSION TAG SEQADV 6NY5 GLU A 98 UNP O60059 EXPRESSION TAG SEQADV 6NY5 PHE A 99 UNP O60059 EXPRESSION TAG SEQADV 6NY5 GLU A 100 UNP O60059 EXPRESSION TAG SEQADV 6NY5 LEU A 101 UNP O60059 EXPRESSION TAG SEQADV 6NY5 ARG A 102 UNP O60059 EXPRESSION TAG SEQADV 6NY5 ARG A 103 UNP O60059 EXPRESSION TAG SEQADV 6NY5 GLN A 104 UNP O60059 EXPRESSION TAG SEQADV 6NY5 ALA A 105 UNP O60059 EXPRESSION TAG SEQADV 6NY5 CYS A 106 UNP O60059 EXPRESSION TAG SEQADV 6NY5 GLY A 107 UNP O60059 EXPRESSION TAG SEQADV 6NY5 ARG A 108 UNP O60059 EXPRESSION TAG SEQADV 6NY5 SER B 97 UNP O60059 EXPRESSION TAG SEQADV 6NY5 GLU B 98 UNP O60059 EXPRESSION TAG SEQADV 6NY5 PHE B 99 UNP O60059 EXPRESSION TAG SEQADV 6NY5 GLU B 100 UNP O60059 EXPRESSION TAG SEQADV 6NY5 LEU B 101 UNP O60059 EXPRESSION TAG SEQADV 6NY5 ARG B 102 UNP O60059 EXPRESSION TAG SEQADV 6NY5 ARG B 103 UNP O60059 EXPRESSION TAG SEQADV 6NY5 GLN B 104 UNP O60059 EXPRESSION TAG SEQADV 6NY5 ALA B 105 UNP O60059 EXPRESSION TAG SEQADV 6NY5 CYS B 106 UNP O60059 EXPRESSION TAG SEQADV 6NY5 GLY B 107 UNP O60059 EXPRESSION TAG SEQADV 6NY5 ARG B 108 UNP O60059 EXPRESSION TAG SEQRES 1 A 389 SER GLU PHE GLU LEU ARG ARG GLN ALA CYS GLY ARG SER SEQRES 2 A 389 GLN LEU LEU LYS SER ARG VAL ASP ILE LEU GLU VAL ALA SEQRES 3 A 389 ARG GLN PHE GLU MET ARG ILE ASN LEU ASP ILE VAL ASP SEQRES 4 A 389 SER MET ILE ALA SER ALA ILE GLU ASN ASN LYS VAL ALA SEQRES 5 A 389 THR GLU ILE LEU PRO PRO VAL GLU THR LEU ARG SER ARG SEQRES 6 A 389 GLN PHE GLU ALA SER LYS LEU ARG GLU ILE ARG LYS ASN SEQRES 7 A 389 ILE ASP SER GLY PHE TYR THR GLN GLU GLU ILE GLU VAL SEQRES 8 A 389 ILE ALA ARG SER MET LEU ASP ASP VAL ALA GLU LEU SER SEQRES 9 A 389 SER ASP TYR LEU GLY ASN THR VAL VAL GLN LYS PHE PHE SEQRES 10 A 389 GLU TYR CYS SER ASP PRO ILE LYS GLU ALA MET LEU GLU SEQRES 11 A 389 ARG ILE ALA PRO TYR LEU ALA ALA ILE GLY ILE HIS LYS SEQRES 12 A 389 ASN GLY THR TRP ALA ALA GLN LYS ILE ILE ASP VAL ALA SEQRES 13 A 389 SER THR GLU LYS GLN MET ASP LEU ILE VAL LYS HIS LEU SEQRES 14 A 389 ARG PRO TYR THR ALA LEU LEU TYR PHE ASP GLN PHE GLY SEQRES 15 A 389 ASN TYR VAL ALA GLN CYS CYS LEU ARG PHE LYS TYR PRO SEQRES 16 A 389 LYS ASN THR PHE LEU PHE GLU VAL MET ALA ARG HIS CYS SEQRES 17 A 389 CYS GLU ILE GLY GLN SER ARG PHE GLY ALA ARG ALA ILE SEQRES 18 A 389 ARG ALA CYS LEU GLU ASN GLU ASN ALA THR PHE GLU GLN SEQRES 19 A 389 GLN ALA LEU VAL VAL ALA SER ILE ILE ILE ASN SER HIS SEQRES 20 A 389 LEU LEU ALA THR ASN SER ASN GLY MET LEU LEU LEU THR SEQRES 21 A 389 TRP LEU LEU ASP ASN SER PHE PHE ARG ASN ARG HIS ARG SEQRES 22 A 389 LEU LEU ALA ILE HIS LEU ALA THR HIS LEU HIS THR THR SEQRES 23 A 389 CYS THR HIS LYS LEU ALA SER THR LEU ILE PHE LYS LEU SEQRES 24 A 389 ILE ASN ASN LYS GLN GLU PRO GLU SER ARG ASN LEU LEU SEQRES 25 A 389 LEU LYS ASN LEU PHE PHE SER GLU LYS ASP ASN VAL LEU SEQRES 26 A 389 THR TYR ILE LEU GLN ASP GLN ALA VAL GLY PRO SER PHE SEQRES 27 A 389 ILE HIS LYS VAL ILE THR TYR PRO SER ILE GLY ARG GLU SEQRES 28 A 389 PHE LEU ALA GLN PHE HIS LEU VAL ILE LYS ARG VAL LEU SEQRES 29 A 389 ILE ASN ILE HIS ALA GLN PRO ASN ALA VAL TYR CYS ARG SEQRES 30 A 389 LEU MET GLU GLU VAL GLY MET THR SER LYS SER ILE SEQRES 1 B 389 SER GLU PHE GLU LEU ARG ARG GLN ALA CYS GLY ARG SER SEQRES 2 B 389 GLN LEU LEU LYS SER ARG VAL ASP ILE LEU GLU VAL ALA SEQRES 3 B 389 ARG GLN PHE GLU MET ARG ILE ASN LEU ASP ILE VAL ASP SEQRES 4 B 389 SER MET ILE ALA SER ALA ILE GLU ASN ASN LYS VAL ALA SEQRES 5 B 389 THR GLU ILE LEU PRO PRO VAL GLU THR LEU ARG SER ARG SEQRES 6 B 389 GLN PHE GLU ALA SER LYS LEU ARG GLU ILE ARG LYS ASN SEQRES 7 B 389 ILE ASP SER GLY PHE TYR THR GLN GLU GLU ILE GLU VAL SEQRES 8 B 389 ILE ALA ARG SER MET LEU ASP ASP VAL ALA GLU LEU SER SEQRES 9 B 389 SER ASP TYR LEU GLY ASN THR VAL VAL GLN LYS PHE PHE SEQRES 10 B 389 GLU TYR CYS SER ASP PRO ILE LYS GLU ALA MET LEU GLU SEQRES 11 B 389 ARG ILE ALA PRO TYR LEU ALA ALA ILE GLY ILE HIS LYS SEQRES 12 B 389 ASN GLY THR TRP ALA ALA GLN LYS ILE ILE ASP VAL ALA SEQRES 13 B 389 SER THR GLU LYS GLN MET ASP LEU ILE VAL LYS HIS LEU SEQRES 14 B 389 ARG PRO TYR THR ALA LEU LEU TYR PHE ASP GLN PHE GLY SEQRES 15 B 389 ASN TYR VAL ALA GLN CYS CYS LEU ARG PHE LYS TYR PRO SEQRES 16 B 389 LYS ASN THR PHE LEU PHE GLU VAL MET ALA ARG HIS CYS SEQRES 17 B 389 CYS GLU ILE GLY GLN SER ARG PHE GLY ALA ARG ALA ILE SEQRES 18 B 389 ARG ALA CYS LEU GLU ASN GLU ASN ALA THR PHE GLU GLN SEQRES 19 B 389 GLN ALA LEU VAL VAL ALA SER ILE ILE ILE ASN SER HIS SEQRES 20 B 389 LEU LEU ALA THR ASN SER ASN GLY MET LEU LEU LEU THR SEQRES 21 B 389 TRP LEU LEU ASP ASN SER PHE PHE ARG ASN ARG HIS ARG SEQRES 22 B 389 LEU LEU ALA ILE HIS LEU ALA THR HIS LEU HIS THR THR SEQRES 23 B 389 CYS THR HIS LYS LEU ALA SER THR LEU ILE PHE LYS LEU SEQRES 24 B 389 ILE ASN ASN LYS GLN GLU PRO GLU SER ARG ASN LEU LEU SEQRES 25 B 389 LEU LYS ASN LEU PHE PHE SER GLU LYS ASP ASN VAL LEU SEQRES 26 B 389 THR TYR ILE LEU GLN ASP GLN ALA VAL GLY PRO SER PHE SEQRES 27 B 389 ILE HIS LYS VAL ILE THR TYR PRO SER ILE GLY ARG GLU SEQRES 28 B 389 PHE LEU ALA GLN PHE HIS LEU VAL ILE LYS ARG VAL LEU SEQRES 29 B 389 ILE ASN ILE HIS ALA GLN PRO ASN ALA VAL TYR CYS ARG SEQRES 30 B 389 LEU MET GLU GLU VAL GLY MET THR SER LYS SER ILE SEQRES 1 C 13 U U A A U A A C U U A A U HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 B 501 5 HET SO4 B 502 5 HET MG C 101 1 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 MG MG 2+ FORMUL 10 HOH *25(H2 O) HELIX 1 AA1 SER A 97 ALA A 105 1 9 HELIX 2 AA2 SER A 109 SER A 114 1 6 HELIX 3 AA3 SER A 114 GLN A 124 1 11 HELIX 4 AA4 ASN A 130 ASN A 144 1 15 HELIX 5 AA5 SER A 160 SER A 177 1 18 HELIX 6 AA6 THR A 181 MET A 192 1 12 HELIX 7 AA7 ASP A 195 SER A 200 1 6 HELIX 8 AA8 LEU A 204 CYS A 216 1 13 HELIX 9 AA9 SER A 217 ALA A 229 1 13 HELIX 10 AB1 TYR A 231 ILE A 237 1 7 HELIX 11 AB2 ASN A 240 VAL A 251 1 12 HELIX 12 AB3 THR A 254 ARG A 266 1 13 HELIX 13 AB4 TYR A 268 ASP A 275 1 8 HELIX 14 AB5 PHE A 277 CYS A 285 1 9 HELIX 15 AB6 LEU A 286 LYS A 289 5 4 HELIX 16 AB7 ASN A 293 HIS A 303 1 11 HELIX 17 AB8 HIS A 303 GLN A 309 1 7 HELIX 18 AB9 SER A 310 ASN A 323 1 14 HELIX 19 AC1 THR A 327 ILE A 340 1 14 HELIX 20 AC2 ASN A 341 ALA A 346 1 6 HELIX 21 AC3 ASN A 348 ASP A 360 1 13 HELIX 22 AC4 ASN A 366 ALA A 376 1 11 HELIX 23 AC5 HIS A 378 CYS A 383 1 6 HELIX 24 AC6 LEU A 387 ASN A 398 1 12 HELIX 25 AC7 GLU A 401 PHE A 414 1 14 HELIX 26 AC8 SER A 415 LYS A 417 5 3 HELIX 27 AC9 ASP A 418 ASP A 427 1 10 HELIX 28 AD1 VAL A 430 THR A 440 1 11 HELIX 29 AD2 ARG A 446 HIS A 464 1 19 HELIX 30 AD3 TYR A 471 GLU A 477 1 7 HELIX 31 AD4 GLU B 98 ALA B 105 1 8 HELIX 32 AD5 SER B 109 SER B 114 1 6 HELIX 33 AD6 SER B 114 PHE B 125 1 12 HELIX 34 AD7 ASN B 130 ASN B 144 1 15 HELIX 35 AD8 GLU B 164 SER B 177 1 14 HELIX 36 AD9 THR B 181 SER B 191 1 11 HELIX 37 AE1 ASP B 195 SER B 201 1 7 HELIX 38 AE2 LEU B 204 CYS B 216 1 13 HELIX 39 AE3 SER B 217 ILE B 237 1 21 HELIX 40 AE4 ASN B 240 VAL B 251 1 12 HELIX 41 AE5 THR B 254 ARG B 266 1 13 HELIX 42 AE6 TYR B 268 PHE B 274 1 7 HELIX 43 AE7 PHE B 277 CYS B 285 1 9 HELIX 44 AE8 LEU B 286 LYS B 289 5 4 HELIX 45 AE9 ASN B 293 HIS B 303 1 11 HELIX 46 AF1 HIS B 303 GLN B 309 1 7 HELIX 47 AF2 SER B 310 GLU B 322 1 13 HELIX 48 AF3 THR B 327 ASN B 341 1 15 HELIX 49 AF4 ASN B 341 ALA B 346 1 6 HELIX 50 AF5 ASN B 348 ASP B 360 1 13 HELIX 51 AF6 ASN B 366 ALA B 376 1 11 HELIX 52 AF7 HIS B 378 CYS B 383 1 6 HELIX 53 AF8 LEU B 387 ASN B 398 1 12 HELIX 54 AF9 GLU B 401 PHE B 414 1 14 HELIX 55 AG1 ASP B 418 ASP B 427 1 10 HELIX 56 AG2 VAL B 430 THR B 440 1 11 HELIX 57 AG3 ARG B 446 HIS B 464 1 19 HELIX 58 AG4 TYR B 471 VAL B 478 1 8 SSBOND 1 CYS A 106 CYS A 305 1555 1555 2.03 SSBOND 2 CYS B 106 CYS B 305 1555 1555 2.03 LINK O2 C C 7 MG MG C 101 1555 1555 2.40 LINK OP1 A C 10 MG MG C 101 1555 1555 2.31 CISPEP 1 TYR A 290 PRO A 291 0 1.58 CISPEP 2 TYR B 290 PRO B 291 0 5.72 SITE 1 AC1 3 ARG A 102 SER A 310 ARG A 311 SITE 1 AC2 2 THR A 254 GLU A 255 SITE 1 AC3 4 ARG A 103 ARG A 108 SER A 109 ARG A 302 SITE 1 AC4 5 ARG B 103 SER B 109 LEU B 112 ARG B 302 SITE 2 AC4 5 HIS B 303 SITE 1 AC5 2 THR B 254 GLU B 255 SITE 1 AC6 2 C C 7 A C 10 CRYST1 159.677 159.677 215.530 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006263 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004640 0.00000