HEADER HYDROLASE 11-FEB-19 6NY9 TITLE ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 10 FROM MOUSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYCOPHENOLIC ACID ACYL-GLUCURONIDE ESTERASE, MITOCHONDRIAL; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 10, COMPND 5 ABHYDROLASE DOMAIN-CONTAINING PROTEIN 10; COMPND 6 EC: 3.1.1.93; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ABHD10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS ALPHA/BETA HYDROLASE, DEPALMITOYLASE, MITOCHONDRIA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.CAO,P.A.RICE,B.C.DICKINSON REVDAT 3 11-OCT-23 6NY9 1 REMARK REVDAT 2 05-AUG-20 6NY9 1 JRNL LINK REVDAT 1 22-JAN-20 6NY9 0 JRNL AUTH Y.CAO,T.QIU,R.S.KATHAYAT,S.A.AZIZI,A.K.THORNE,D.AHN, JRNL AUTH 2 Y.FUKATA,M.FUKATA,P.A.RICE,B.C.DICKINSON JRNL TITL ABHD10 IS AN S-DEPALMITOYLASE AFFECTING REDOX HOMEOSTASIS JRNL TITL 2 THROUGH PEROXIREDOXIN-5. JRNL REF NAT.CHEM.BIOL. V. 15 1232 2019 JRNL REFN ESSN 1552-4469 JRNL PMID 31740833 JRNL DOI 10.1038/S41589-019-0399-Y REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 48620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 74.6800 - 3.9000 1.00 4209 167 0.1894 0.2316 REMARK 3 2 3.9000 - 3.0900 1.00 3951 158 0.1639 0.1911 REMARK 3 3 3.0900 - 2.7000 1.00 3917 157 0.1780 0.1782 REMARK 3 4 2.7000 - 2.4600 0.99 3848 154 0.1818 0.2005 REMARK 3 5 2.4600 - 2.2800 0.99 3817 154 0.1841 0.1848 REMARK 3 6 2.2800 - 2.1400 0.97 3721 148 0.1937 0.1942 REMARK 3 7 2.1400 - 2.0400 0.97 3747 149 0.1979 0.2316 REMARK 3 8 2.0400 - 1.9500 0.95 3607 145 0.2048 0.2306 REMARK 3 9 1.9500 - 1.8700 0.92 3499 147 0.2338 0.2777 REMARK 3 10 1.8700 - 1.8100 0.89 3395 138 0.2377 0.2717 REMARK 3 11 1.8100 - 1.7500 0.82 3098 122 0.2809 0.2531 REMARK 3 12 1.7500 - 1.7000 0.80 3052 122 0.2947 0.3514 REMARK 3 13 1.7000 - 1.6600 0.76 2880 118 0.3090 0.3534 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.192 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.014 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2004 REMARK 3 ANGLE : 1.034 2714 REMARK 3 CHIRALITY : 0.058 307 REMARK 3 PLANARITY : 0.007 343 REMARK 3 DIHEDRAL : 12.507 1209 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 29.4151 -34.2370 17.0272 REMARK 3 T TENSOR REMARK 3 T11: 0.0840 T22: 0.1670 REMARK 3 T33: 0.1172 T12: -0.0177 REMARK 3 T13: 0.0195 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.2537 L22: 1.4300 REMARK 3 L33: 1.8217 L12: 0.1177 REMARK 3 L13: 0.6179 L23: 0.0098 REMARK 3 S TENSOR REMARK 3 S11: -0.0540 S12: -0.1173 S13: 0.0371 REMARK 3 S21: 0.0557 S22: 0.0152 S23: 0.1586 REMARK 3 S31: 0.0068 S32: -0.2702 S33: 0.0243 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52270 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.657 REMARK 200 RESOLUTION RANGE LOW (A) : 56.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.10820 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.13-2998 REMARK 200 STARTING MODEL: 3LLC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M STRONTIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.04 M SODIUM CACODYLATE TRIHYDRATE PH 6.4, 25% V/V (+/-)-2- REMARK 280 METHYL-2,4-PENTANEDIOL (MPD), 0.012 M SPERMINE REMARK 280 TETRAHYDROCHLORIDE, LIQUID DIFFUSION, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.79850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.79850 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.79850 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 74.79850 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 74.79850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 74.79850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -189.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 49.69400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -86.07253 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 99.38800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 SR SR B 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 600 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 100 -116.95 56.59 REMARK 500 ALA B 126 51.64 -97.66 REMARK 500 PHE B 163 -48.80 -133.78 REMARK 500 ASP B 226 -168.65 -105.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 605 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 302 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 7 OD1 REMARK 620 2 ARG B 8 O 97.5 REMARK 620 3 HOH B 410 O 131.5 67.8 REMARK 620 4 HOH B 540 O 154.3 76.7 70.1 REMARK 620 5 HOH B 542 O 81.1 143.9 137.8 89.0 REMARK 620 6 HOH B 567 O 109.7 135.1 67.4 90.9 77.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 303 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 403 O REMARK 620 2 HOH B 429 O 94.5 REMARK 620 3 HOH B 429 O 70.0 84.0 REMARK 620 4 HOH B 451 O 75.5 77.7 139.2 REMARK 620 5 HOH B 518 O 144.1 67.6 133.9 70.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 305 DBREF 6NY9 B 1 250 UNP Q6PE15 ABHDA_MOUSE 44 293 SEQRES 1 B 250 ALA SER LEU SER PHE LEU ASN ARG SER GLU LEU PRO ASN SEQRES 2 B 250 LEU ALA TYR LYS ARG LEU LYS GLY LYS THR PRO GLY ILE SEQRES 3 B 250 ILE PHE ILE PRO GLY TYR LEU SER ASN MET ASN GLY ILE SEQRES 4 B 250 LYS ALA VAL ALA VAL GLU GLU PHE CYS LYS SER LEU GLY SEQRES 5 B 250 HIS ALA PHE ILE ARG PHE ASP TYR SER GLY ILE GLY SER SEQRES 6 B 250 SER ASP GLY ASN LEU ALA GLU CYS THR VAL GLY LYS TRP SEQRES 7 B 250 ARG LYS ASP VAL LEU SER ILE LEU ASP ASP VAL ALA GLU SEQRES 8 B 250 GLY PRO GLN ILE LEU VAL GLY SER SER LEU GLY GLY TRP SEQRES 9 B 250 LEU MET LEU HIS ALA ALA ILE ALA ARG PRO GLU LYS VAL SEQRES 10 B 250 ILE ALA LEU ILE GLY ILE ALA THR ALA ALA ASP GLY LEU SEQRES 11 B 250 VAL THR GLN TYR HIS ALA LEU PRO VAL GLU THR GLN LYS SEQRES 12 B 250 GLU ILE GLU MET LYS GLY GLU TRP THR LEU PRO SER ARG SEQRES 13 B 250 TYR ASN LYS GLU GLY TYR PHE ARG ILE PRO TYR SER PHE SEQRES 14 B 250 ILE LYS GLU ALA GLU HIS HIS CYS LEU LEU HIS SER PRO SEQRES 15 B 250 ILE PRO VAL THR CYS PRO VAL ARG LEU LEU HIS GLY MET SEQRES 16 B 250 LYS ASP GLU ILE VAL PRO TRP GLN ARG SER LEU GLN VAL SEQRES 17 B 250 ALA ASP ARG ILE VAL SER PRO ASP VAL ASP VAL ILE LEU SEQRES 18 B 250 ARG LYS GLN GLY ASP HIS ARG MET LYS GLU LYS ALA ASP SEQRES 19 B 250 ILE HIS LEU LEU ILE CYS THR ILE ASP ASP LEU ILE ASP SEQRES 20 B 250 LYS LEU SER HET MPD B 301 22 HET SR B 302 1 HET SR B 303 1 HET SR B 304 1 HET SR B 305 1 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM SR STRONTIUM ION FORMUL 2 MPD C6 H14 O2 FORMUL 3 SR 4(SR 2+) FORMUL 7 HOH *205(H2 O) HELIX 1 AA1 GLY B 38 GLY B 52 1 15 HELIX 2 AA2 ASN B 69 CYS B 73 5 5 HELIX 3 AA3 THR B 74 VAL B 89 1 16 HELIX 4 AA4 SER B 100 ARG B 113 1 14 HELIX 5 AA5 LEU B 130 LEU B 137 1 8 HELIX 6 AA6 PRO B 138 GLY B 149 1 12 HELIX 7 AA7 PRO B 154 LYS B 159 1 6 HELIX 8 AA8 TYR B 167 GLU B 174 1 8 HELIX 9 AA9 HIS B 175 CYS B 177 5 3 HELIX 10 AB1 TRP B 202 ILE B 212 1 11 HELIX 11 AB2 GLU B 231 SER B 250 1 20 SHEET 1 AA1 8 LEU B 3 LEU B 6 0 SHEET 2 AA1 8 LEU B 14 LEU B 19 -1 O LEU B 14 N LEU B 6 SHEET 3 AA1 8 HIS B 53 PHE B 58 -1 O PHE B 55 N LEU B 19 SHEET 4 AA1 8 LYS B 22 ILE B 29 1 N LYS B 22 O ALA B 54 SHEET 5 AA1 8 GLN B 94 SER B 99 1 O ILE B 95 N GLY B 25 SHEET 6 AA1 8 VAL B 117 ILE B 123 1 O ILE B 121 N LEU B 96 SHEET 7 AA1 8 VAL B 189 GLY B 194 1 O LEU B 192 N GLY B 122 SHEET 8 AA1 8 VAL B 217 ARG B 222 1 O ILE B 220 N LEU B 191 SHEET 1 AA2 2 GLU B 150 THR B 152 0 SHEET 2 AA2 2 ARG B 164 PRO B 166 -1 O ILE B 165 N TRP B 151 LINK OD1 ASN B 7 SR SR B 302 1555 1555 2.39 LINK O ARG B 8 SR SR B 302 1555 1555 2.48 LINK O HIS B 135 SR SR B 304 1555 1555 2.40 LINK SR SR B 302 O HOH B 410 1555 1555 2.31 LINK SR SR B 302 O HOH B 540 1555 1555 2.62 LINK SR SR B 302 O HOH B 542 1555 1555 2.44 LINK SR SR B 302 O HOH B 567 1555 1555 2.97 LINK SR SR B 303 O HOH B 403 1555 12545 2.95 LINK SR SR B 303 O HOH B 429 1555 1555 2.92 LINK SR SR B 303 O HOH B 429 1555 12545 2.69 LINK SR SR B 303 O HOH B 451 1555 1555 2.64 LINK SR SR B 303 O HOH B 518 1555 1555 2.79 CISPEP 1 THR B 23 PRO B 24 0 2.38 SITE 1 AC1 2 SER B 100 HOH B 408 SITE 1 AC2 8 ASN B 7 ARG B 8 GLU B 10 ASN B 13 SITE 2 AC2 8 HOH B 410 HOH B 540 HOH B 542 HOH B 567 SITE 1 AC3 4 HOH B 403 HOH B 429 HOH B 451 HOH B 518 SITE 1 AC4 1 HIS B 135 SITE 1 AC5 2 ASP B 243 HOH B 401 CRYST1 99.388 99.388 149.597 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010062 0.005809 0.000000 0.00000 SCALE2 0.000000 0.011618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006685 0.00000