HEADER VIRUS 12-FEB-19 6NZ0 TITLE CRYO-EM STRUCTURE OF AAV-2 IN COMPLEX WITH AAVR PKD DOMAINS 1 AND 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYSLEXIA-ASSOCIATED PROTEIN KIAA0319-LIKE PROTEIN; COMPND 3 CHAIN: Z; COMPND 4 FRAGMENT: RESIDUES 311-597; COMPND 5 SYNONYM: ADENO-ASSOCIATED VIRUS RECEPTOR,AAVR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAPSID PROTEIN VP1; COMPND 9 CHAIN: A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0319L, AAVR, KIAA1837, PP791; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: NEBEXPRESS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ADENO-ASSOCIATED VIRUS - 2; SOURCE 12 ORGANISM_COMMON: ISOLATE SRIVASTAVA/1982; SOURCE 13 ORGANISM_TAXID: 648242; SOURCE 14 GENE: VP1; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PBAC2 KEYWDS AAV, AAVR, RECEPTOR, CORECEPTOR, VIRUS, KIAA0319L, PKD, PARVOVIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR N.L.MEYER,Q.XIE,O.DAVULCU,C.YOSHIOKA,M.S.CHAPMAN REVDAT 3 18-DEC-19 6NZ0 1 CRYST1 SCALE REVDAT 2 19-JUN-19 6NZ0 1 JRNL REVDAT 1 12-JUN-19 6NZ0 0 JRNL AUTH N.L.MEYER,G.HU,O.DAVULCU,Q.XIE,A.J.NOBLE,C.YOSHIOKA, JRNL AUTH 2 D.S.GINGERICH,A.TRZYNKA,L.DAVID,S.M.STAGG,M.S.CHAPMAN JRNL TITL STRUCTURE OF THE GENE THERAPY VECTOR, ADENO-ASSOCIATED VIRUS JRNL TITL 2 WITH ITS CELL RECEPTOR, AAVR. JRNL REF ELIFE V. 8 2019 JRNL REFN ESSN 2050-084X JRNL PMID 31115336 JRNL DOI 10.7554/ELIFE.44707 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, SERIALEM, GCTF, COOT, RELION, REMARK 3 RELION, RELION, RELION, RSREF REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1LP3 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : MAP VALUES AT GRID POINTS WITHIN REMARK 3 2 ANGSTROM OF ATOMS REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : AN INITIAL MODEL FOR AAVR WAS CONSTRUCTED BY REMARK 3 HOMOLOGY MODELING USING MODELLER 9.2. AFTER REMODELING AAVR AND REMARK 3 THE CRYSTAL STRUCTURE OF AAV2, THE STRUCTURE WAS REFINED USING REMARK 3 RSREF EMBEDDED IN CNS FOR STEREOCHEMICALLY RESTRAINED TORSION REMARK 3 ANGLE SIMULATED ANNEALING AND GRADIENT DESCENT OPTIMIZATION. REMARK 3 STAND-ALONE RSREF WAS USED FOR REFINEMENT OF EM ENVELOPE REMARK 3 CORRECTIONS, RESOLUTION ESTIMATES, AND RESTRAINED ATOMIC B- REMARK 3 FACTORS. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.400 REMARK 3 NUMBER OF PARTICLES : 21373 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6NZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000238684. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ADENO-ASSOCIATED VIRUS - 2; REMARK 245 BINARY COMPLEX OF AAV-2 WITH A REMARK 245 FRAGMENT OF ITS CELLULAR REMARK 245 RECEPTOR, AAVR OR DYSLEXIA- REMARK 245 ASSOCIATED PROTEIN KIAA0319- REMARK 245 LIKE PROTEIN. REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.10 REMARK 245 SAMPLE SUPPORT DETAILS : GLOW DISCHARGE SETTINGS: PELCO REMARK 245 EASIGLOW, 25S, 25MA, 0.39MBAR, REMARK 245 NEGATIVE POLARITY GRID: TED REMARK 245 PELLA CAT#01824, ULTRATHIN REMARK 245 CARBON FILM (<3NM) ON LACEY REMARK 245 CARBON SUPPORT FILM REMARK 245 SAMPLE VITRIFICATION DETAILS : 4UL OF AAV-2 (1.7UM) WAS ADDED REMARK 245 TO THE GRID, FOLLOWED BY 4UL OF REMARK 245 AAVR-PKD1-2 (16.7UM), WITH REMARK 245 MANUAL BLOTTING AFTER EACH REMARK 245 ADDITION WITH WHATMAN PAPER REMARK 245 (CAT. NO. 1001-110.) 4UL OF REMARK 245 BUFFER CONTAINING 25MM HEPES, REMARK 245 150MM NACL, PH 7.4 WAS ADDED TO REMARK 245 THE GRID BEFORE FINAL BLOTTING REMARK 245 AND PLUNGE-FREEZING IN THE REMARK 245 VITROBOT (BLOT TIME 1.5SEC, REMARK 245 BLOT FORCE -1). REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : AAV-2 VIRUS-LIKE PARTICLES REMARK 245 EXPRESSED IN SF9 CELLS USING INVITROGEN'S BAC-TO-BAC EXPRESSION REMARK 245 SYSTEM; EXPRESSED N-TERMINALLY HIS6-TAGGED FRAGMENT OF AAVR REMARK 245 CONTAINING THE PKD1 AND PKD2 DOMAINS. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2329 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : -800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : -2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 25.40 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 2 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 2 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 3 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 4 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 5 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 7 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 8 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 8 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 9 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 10 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 12 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 12 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 13 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 13 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 13 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 14 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 14 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 14 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 15 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 15 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 15 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 17 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 17 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 18 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 18 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 18 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 19 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 19 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 19 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 20 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 20 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 20 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 22 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 22 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 23 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 24 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 24 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 25 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 25 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 25 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 26 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 27 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 28 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 28 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 28 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 29 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 29 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 29 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 30 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 30 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 31 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 32 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 32 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 33 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 33 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 33 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 34 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 35 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 35 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 36 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 37 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 37 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 38 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 38 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 38 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 39 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 39 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 39 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 40 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 40 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 42 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 43 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 43 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 44 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 44 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 44 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 45 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 45 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 45 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 47 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 47 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 48 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 48 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 48 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 49 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 49 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 50 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 50 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 52 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 52 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 53 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 53 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 54 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 55 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 57 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 58 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 58 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 59 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 59 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 59 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 60 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 60 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 60 0.809017 -0.309017 -0.500000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET Z 308 REMARK 465 ALA Z 309 REMARK 465 SER Z 310 REMARK 465 VAL Z 311 REMARK 465 SER Z 312 REMARK 465 ALA Z 313 REMARK 465 GLY Z 314 REMARK 465 GLU Z 315 REMARK 465 SER Z 316 REMARK 465 VAL Z 317 REMARK 465 GLN Z 318 REMARK 465 ILE Z 319 REMARK 465 THR Z 320 REMARK 465 LEU Z 321 REMARK 465 PRO Z 322 REMARK 465 LYS Z 323 REMARK 465 ASN Z 324 REMARK 465 GLU Z 325 REMARK 465 VAL Z 326 REMARK 465 GLN Z 327 REMARK 465 LEU Z 328 REMARK 465 ASN Z 329 REMARK 465 ALA Z 330 REMARK 465 TYR Z 331 REMARK 465 VAL Z 332 REMARK 465 LEU Z 333 REMARK 465 GLN Z 334 REMARK 465 GLU Z 335 REMARK 465 PRO Z 336 REMARK 465 PRO Z 337 REMARK 465 LYS Z 338 REMARK 465 GLY Z 339 REMARK 465 GLU Z 340 REMARK 465 THR Z 341 REMARK 465 TYR Z 342 REMARK 465 THR Z 343 REMARK 465 TYR Z 344 REMARK 465 ASP Z 345 REMARK 465 TRP Z 346 REMARK 465 GLN Z 347 REMARK 465 LEU Z 348 REMARK 465 ILE Z 349 REMARK 465 THR Z 350 REMARK 465 HIS Z 351 REMARK 465 PRO Z 352 REMARK 465 ARG Z 353 REMARK 465 ASP Z 354 REMARK 465 TYR Z 355 REMARK 465 SER Z 356 REMARK 465 GLY Z 357 REMARK 465 GLU Z 358 REMARK 465 MET Z 359 REMARK 465 GLU Z 360 REMARK 465 GLY Z 361 REMARK 465 LYS Z 362 REMARK 465 HIS Z 363 REMARK 465 SER Z 364 REMARK 465 GLN Z 365 REMARK 465 ILE Z 366 REMARK 465 LEU Z 367 REMARK 465 LYS Z 368 REMARK 465 LEU Z 369 REMARK 465 SER Z 370 REMARK 465 LYS Z 371 REMARK 465 LEU Z 372 REMARK 465 THR Z 373 REMARK 465 PRO Z 374 REMARK 465 GLY Z 375 REMARK 465 LEU Z 376 REMARK 465 TYR Z 377 REMARK 465 GLU Z 378 REMARK 465 PHE Z 379 REMARK 465 LYS Z 380 REMARK 465 VAL Z 381 REMARK 465 ILE Z 382 REMARK 465 VAL Z 383 REMARK 465 GLU Z 384 REMARK 465 GLY Z 385 REMARK 465 GLN Z 386 REMARK 465 ASN Z 387 REMARK 465 ALA Z 388 REMARK 465 HIS Z 389 REMARK 465 GLY Z 390 REMARK 465 GLU Z 391 REMARK 465 GLY Z 392 REMARK 465 TYR Z 393 REMARK 465 VAL Z 394 REMARK 465 ASN Z 395 REMARK 465 VAL Z 396 REMARK 465 THR Z 397 REMARK 465 VAL Z 398 REMARK 465 LYS Z 399 REMARK 465 PRO Z 400 REMARK 465 GLU Z 401 REMARK 465 PRO Z 402 REMARK 465 ARG Z 403 REMARK 465 LYS Z 404 REMARK 465 ASP Z 500 REMARK 465 TYR Z 501 REMARK 465 PRO Z 502 REMARK 465 PRO Z 503 REMARK 465 VAL Z 504 REMARK 465 ALA Z 505 REMARK 465 ASN Z 506 REMARK 465 ALA Z 507 REMARK 465 GLY Z 508 REMARK 465 PRO Z 509 REMARK 465 ASN Z 510 REMARK 465 GLN Z 511 REMARK 465 VAL Z 512 REMARK 465 ILE Z 513 REMARK 465 THR Z 514 REMARK 465 LEU Z 515 REMARK 465 PRO Z 516 REMARK 465 GLN Z 517 REMARK 465 ASN Z 518 REMARK 465 SER Z 519 REMARK 465 ILE Z 520 REMARK 465 THR Z 521 REMARK 465 LEU Z 522 REMARK 465 PHE Z 523 REMARK 465 GLY Z 524 REMARK 465 ASN Z 525 REMARK 465 GLN Z 526 REMARK 465 SER Z 527 REMARK 465 THR Z 528 REMARK 465 ASP Z 529 REMARK 465 ASP Z 530 REMARK 465 HIS Z 531 REMARK 465 GLY Z 532 REMARK 465 ILE Z 533 REMARK 465 THR Z 534 REMARK 465 SER Z 535 REMARK 465 TYR Z 536 REMARK 465 GLU Z 537 REMARK 465 TRP Z 538 REMARK 465 SER Z 539 REMARK 465 LEU Z 540 REMARK 465 SER Z 541 REMARK 465 PRO Z 542 REMARK 465 SER Z 543 REMARK 465 SER Z 544 REMARK 465 LYS Z 545 REMARK 465 GLY Z 546 REMARK 465 LYS Z 547 REMARK 465 VAL Z 548 REMARK 465 VAL Z 549 REMARK 465 GLU Z 550 REMARK 465 MET Z 551 REMARK 465 GLN Z 552 REMARK 465 GLY Z 553 REMARK 465 VAL Z 554 REMARK 465 ARG Z 555 REMARK 465 THR Z 556 REMARK 465 PRO Z 557 REMARK 465 THR Z 558 REMARK 465 LEU Z 559 REMARK 465 GLN Z 560 REMARK 465 LEU Z 561 REMARK 465 SER Z 562 REMARK 465 ALA Z 563 REMARK 465 MET Z 564 REMARK 465 GLN Z 565 REMARK 465 GLU Z 566 REMARK 465 GLY Z 567 REMARK 465 ASP Z 568 REMARK 465 TYR Z 569 REMARK 465 THR Z 570 REMARK 465 TYR Z 571 REMARK 465 GLN Z 572 REMARK 465 LEU Z 573 REMARK 465 THR Z 574 REMARK 465 VAL Z 575 REMARK 465 THR Z 576 REMARK 465 ASP Z 577 REMARK 465 THR Z 578 REMARK 465 ILE Z 579 REMARK 465 GLY Z 580 REMARK 465 GLN Z 581 REMARK 465 GLN Z 582 REMARK 465 ALA Z 583 REMARK 465 THR Z 584 REMARK 465 ALA Z 585 REMARK 465 GLN Z 586 REMARK 465 VAL Z 587 REMARK 465 THR Z 588 REMARK 465 VAL Z 589 REMARK 465 ILE Z 590 REMARK 465 VAL Z 591 REMARK 465 GLN Z 592 REMARK 465 PRO Z 593 REMARK 465 GLU Z 594 REMARK 465 ASN Z 595 REMARK 465 ASN Z 596 REMARK 465 LYS Z 597 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 GLY A 5 REMARK 465 TYR A 6 REMARK 465 LEU A 7 REMARK 465 PRO A 8 REMARK 465 ASP A 9 REMARK 465 TRP A 10 REMARK 465 LEU A 11 REMARK 465 GLU A 12 REMARK 465 ASP A 13 REMARK 465 THR A 14 REMARK 465 LEU A 15 REMARK 465 SER A 16 REMARK 465 GLU A 17 REMARK 465 GLY A 18 REMARK 465 ILE A 19 REMARK 465 ARG A 20 REMARK 465 GLN A 21 REMARK 465 TRP A 22 REMARK 465 TRP A 23 REMARK 465 LYS A 24 REMARK 465 LEU A 25 REMARK 465 LYS A 26 REMARK 465 PRO A 27 REMARK 465 GLY A 28 REMARK 465 PRO A 29 REMARK 465 PRO A 30 REMARK 465 PRO A 31 REMARK 465 PRO A 32 REMARK 465 LYS A 33 REMARK 465 PRO A 34 REMARK 465 ALA A 35 REMARK 465 GLU A 36 REMARK 465 ARG A 37 REMARK 465 HIS A 38 REMARK 465 LYS A 39 REMARK 465 ASP A 40 REMARK 465 ASP A 41 REMARK 465 SER A 42 REMARK 465 ARG A 43 REMARK 465 GLY A 44 REMARK 465 LEU A 45 REMARK 465 VAL A 46 REMARK 465 LEU A 47 REMARK 465 PRO A 48 REMARK 465 GLY A 49 REMARK 465 TYR A 50 REMARK 465 LYS A 51 REMARK 465 TYR A 52 REMARK 465 LEU A 53 REMARK 465 GLY A 54 REMARK 465 PRO A 55 REMARK 465 PHE A 56 REMARK 465 ASN A 57 REMARK 465 GLY A 58 REMARK 465 LEU A 59 REMARK 465 ASP A 60 REMARK 465 LYS A 61 REMARK 465 GLY A 62 REMARK 465 GLU A 63 REMARK 465 PRO A 64 REMARK 465 VAL A 65 REMARK 465 ASN A 66 REMARK 465 GLU A 67 REMARK 465 ALA A 68 REMARK 465 ASP A 69 REMARK 465 ALA A 70 REMARK 465 ALA A 71 REMARK 465 ALA A 72 REMARK 465 LEU A 73 REMARK 465 GLU A 74 REMARK 465 HIS A 75 REMARK 465 ASP A 76 REMARK 465 LYS A 77 REMARK 465 ALA A 78 REMARK 465 TYR A 79 REMARK 465 ASP A 80 REMARK 465 ARG A 81 REMARK 465 GLN A 82 REMARK 465 LEU A 83 REMARK 465 ASP A 84 REMARK 465 SER A 85 REMARK 465 GLY A 86 REMARK 465 ASP A 87 REMARK 465 ASN A 88 REMARK 465 PRO A 89 REMARK 465 TYR A 90 REMARK 465 LEU A 91 REMARK 465 LYS A 92 REMARK 465 TYR A 93 REMARK 465 ASN A 94 REMARK 465 HIS A 95 REMARK 465 ALA A 96 REMARK 465 ASP A 97 REMARK 465 ALA A 98 REMARK 465 GLU A 99 REMARK 465 PHE A 100 REMARK 465 GLN A 101 REMARK 465 GLU A 102 REMARK 465 ARG A 103 REMARK 465 LEU A 104 REMARK 465 LYS A 105 REMARK 465 GLU A 106 REMARK 465 ASP A 107 REMARK 465 THR A 108 REMARK 465 SER A 109 REMARK 465 PHE A 110 REMARK 465 GLY A 111 REMARK 465 GLY A 112 REMARK 465 ASN A 113 REMARK 465 LEU A 114 REMARK 465 GLY A 115 REMARK 465 ARG A 116 REMARK 465 ALA A 117 REMARK 465 VAL A 118 REMARK 465 PHE A 119 REMARK 465 GLN A 120 REMARK 465 ALA A 121 REMARK 465 LYS A 122 REMARK 465 LYS A 123 REMARK 465 ARG A 124 REMARK 465 VAL A 125 REMARK 465 LEU A 126 REMARK 465 GLU A 127 REMARK 465 PRO A 128 REMARK 465 LEU A 129 REMARK 465 GLY A 130 REMARK 465 LEU A 131 REMARK 465 VAL A 132 REMARK 465 GLU A 133 REMARK 465 GLU A 134 REMARK 465 PRO A 135 REMARK 465 VAL A 136 REMARK 465 LYS A 137 REMARK 465 THR A 138 REMARK 465 ALA A 139 REMARK 465 PRO A 140 REMARK 465 GLY A 141 REMARK 465 LYS A 142 REMARK 465 LYS A 143 REMARK 465 ARG A 144 REMARK 465 PRO A 145 REMARK 465 VAL A 146 REMARK 465 GLU A 147 REMARK 465 HIS A 148 REMARK 465 SER A 149 REMARK 465 PRO A 150 REMARK 465 VAL A 151 REMARK 465 GLU A 152 REMARK 465 PRO A 153 REMARK 465 ASP A 154 REMARK 465 SER A 155 REMARK 465 SER A 156 REMARK 465 SER A 157 REMARK 465 GLY A 158 REMARK 465 THR A 159 REMARK 465 GLY A 160 REMARK 465 LYS A 161 REMARK 465 ALA A 162 REMARK 465 GLY A 163 REMARK 465 GLN A 164 REMARK 465 GLN A 165 REMARK 465 PRO A 166 REMARK 465 ALA A 167 REMARK 465 ARG A 168 REMARK 465 LYS A 169 REMARK 465 ARG A 170 REMARK 465 LEU A 171 REMARK 465 ASN A 172 REMARK 465 PHE A 173 REMARK 465 GLY A 174 REMARK 465 GLN A 175 REMARK 465 THR A 176 REMARK 465 GLY A 177 REMARK 465 ASP A 178 REMARK 465 ALA A 179 REMARK 465 ASP A 180 REMARK 465 SER A 181 REMARK 465 VAL A 182 REMARK 465 PRO A 183 REMARK 465 ASP A 184 REMARK 465 PRO A 185 REMARK 465 GLN A 186 REMARK 465 PRO A 187 REMARK 465 LEU A 188 REMARK 465 GLY A 189 REMARK 465 GLN A 190 REMARK 465 PRO A 191 REMARK 465 PRO A 192 REMARK 465 ALA A 193 REMARK 465 ALA A 194 REMARK 465 PRO A 195 REMARK 465 SER A 196 REMARK 465 GLY A 197 REMARK 465 LEU A 198 REMARK 465 GLY A 199 REMARK 465 THR A 200 REMARK 465 ASN A 201 REMARK 465 THR A 202 REMARK 465 MET A 203 REMARK 465 ALA A 204 REMARK 465 THR A 205 REMARK 465 GLY A 206 REMARK 465 SER A 207 REMARK 465 GLY A 208 REMARK 465 ALA A 209 REMARK 465 PRO A 210 REMARK 465 MET A 211 REMARK 465 ALA A 212 REMARK 465 ASP A 213 REMARK 465 ASN A 214 REMARK 465 ASN A 215 REMARK 465 GLU A 216 REMARK 465 GLY A 217 REMARK 465 ALA A 218 REMARK 465 ASP A 219 REMARK 465 GLY A 220 REMARK 465 VAL A 221 REMARK 465 GLY A 222 REMARK 465 ASN A 223 REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 GLY A 226 REMARK 465 ASN A 227 REMARK 465 TRP A 228 REMARK 465 HIS A 229 REMARK 465 CYS A 230 REMARK 465 ASP A 231 REMARK 465 SER A 232 REMARK 465 THR A 233 REMARK 465 TRP A 234 REMARK 465 MET A 235 REMARK 465 GLY A 236 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 735 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 361 CA - CB - SG ANGL. DEV. = 8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP Z 437 -155.54 -93.85 REMARK 500 LEU Z 451 105.45 -59.37 REMARK 500 GLU Z 454 88.35 -65.66 REMARK 500 ILE Z 456 -60.10 -102.15 REMARK 500 SER Z 457 57.06 37.46 REMARK 500 ASN A 253 8.18 59.95 REMARK 500 HIS A 255 -1.23 81.20 REMARK 500 GLN A 263 8.92 -52.82 REMARK 500 ASN A 285 54.17 -95.27 REMARK 500 THR A 379 -165.49 -128.61 REMARK 500 ARG A 432 41.14 -140.16 REMARK 500 ARG A 459 117.93 -162.43 REMARK 500 ASN A 518 112.79 -164.44 REMARK 500 GLU A 530 46.37 -141.34 REMARK 500 GLU A 562 49.26 -100.64 REMARK 500 THR A 568 -31.81 -135.13 REMARK 500 HIS A 629 73.61 43.00 REMARK 500 ASN A 656 108.78 -53.63 REMARK 500 ASN A 690 49.41 -144.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 508 0.07 SIDE CHAIN REMARK 500 TYR A 700 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Z 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG Z 406 O REMARK 620 2 ASP Z 435 OD2 124.1 REMARK 620 3 ASP Z 436 OD1 62.7 93.9 REMARK 620 4 ASP Z 481 OD1 130.5 76.8 166.7 REMARK 620 5 ASP Z 481 OD2 82.4 95.1 142.5 49.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG Z 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0553 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF AAV-2 IN COMPLEX WITH AAVR PKD DOMAINS 1 AND 2 REMARK 900 RELATED ID: EMD-0621 RELATED DB: EMDB REMARK 900 CRYO-ELECTRON TOMOGRAPHY OF AAV-2 COMPLEXED WITH MBP FUSION REMARK 900 CONSTRUCT OF AAVR PKD DOMAINS 1-5, CLASS 1 REMARK 900 RELATED ID: EMD-0622 RELATED DB: EMDB REMARK 900 CRYO-ELECTRON TOMOGRAPHY OF AAV-2 COMPLEXED WITH MBP FUSION REMARK 900 CONSTRUCT OF AAVR PKD DOMAINS 1-5, CLASS 2 REMARK 900 RELATED ID: EMD-0623 RELATED DB: EMDB REMARK 900 CRYO-ELECTRON TOMOGRAPHY OF AAV-2 COMPLEXED WITH MBP FUSION REMARK 900 CONSTRUCT OF AAVR PKD DOMAINS 1-5, CLASS 3 REMARK 900 RELATED ID: EMD-0624 RELATED DB: EMDB REMARK 900 CRYO-ELECTRON TOMOGRAPHY OF AAV-2 COMPLEXED WITH MBP FUSION REMARK 900 CONSTRUCT OF AAVR PKD DOMAINS 1-5, CLASS 4 DBREF 6NZ0 Z 311 597 UNP Q8IZA0 K319L_HUMAN 311 597 DBREF 6NZ0 A 1 735 UNP P03135 CAPSD_AAV2S 1 735 SEQADV 6NZ0 MET Z 308 UNP Q8IZA0 INITIATING METHIONINE SEQADV 6NZ0 ALA Z 309 UNP Q8IZA0 EXPRESSION TAG SEQADV 6NZ0 SER Z 310 UNP Q8IZA0 EXPRESSION TAG SEQADV 6NZ0 CYS A 388 UNP P03135 GLY 388 CONFLICT SEQRES 1 Z 290 MET ALA SER VAL SER ALA GLY GLU SER VAL GLN ILE THR SEQRES 2 Z 290 LEU PRO LYS ASN GLU VAL GLN LEU ASN ALA TYR VAL LEU SEQRES 3 Z 290 GLN GLU PRO PRO LYS GLY GLU THR TYR THR TYR ASP TRP SEQRES 4 Z 290 GLN LEU ILE THR HIS PRO ARG ASP TYR SER GLY GLU MET SEQRES 5 Z 290 GLU GLY LYS HIS SER GLN ILE LEU LYS LEU SER LYS LEU SEQRES 6 Z 290 THR PRO GLY LEU TYR GLU PHE LYS VAL ILE VAL GLU GLY SEQRES 7 Z 290 GLN ASN ALA HIS GLY GLU GLY TYR VAL ASN VAL THR VAL SEQRES 8 Z 290 LYS PRO GLU PRO ARG LYS ASN ARG PRO PRO ILE ALA ILE SEQRES 9 Z 290 VAL SER PRO GLN PHE GLN GLU ILE SER LEU PRO THR THR SEQRES 10 Z 290 SER THR VAL ILE ASP GLY SER GLN SER THR ASP ASP ASP SEQRES 11 Z 290 LYS ILE VAL GLN TYR HIS TRP GLU GLU LEU LYS GLY PRO SEQRES 12 Z 290 LEU ARG GLU GLU LYS ILE SER GLU ASP THR ALA ILE LEU SEQRES 13 Z 290 LYS LEU SER LYS LEU VAL PRO GLY ASN TYR THR PHE SER SEQRES 14 Z 290 LEU THR VAL VAL ASP SER ASP GLY ALA THR ASN SER THR SEQRES 15 Z 290 THR ALA ASN LEU THR VAL ASN LYS ALA VAL ASP TYR PRO SEQRES 16 Z 290 PRO VAL ALA ASN ALA GLY PRO ASN GLN VAL ILE THR LEU SEQRES 17 Z 290 PRO GLN ASN SER ILE THR LEU PHE GLY ASN GLN SER THR SEQRES 18 Z 290 ASP ASP HIS GLY ILE THR SER TYR GLU TRP SER LEU SER SEQRES 19 Z 290 PRO SER SER LYS GLY LYS VAL VAL GLU MET GLN GLY VAL SEQRES 20 Z 290 ARG THR PRO THR LEU GLN LEU SER ALA MET GLN GLU GLY SEQRES 21 Z 290 ASP TYR THR TYR GLN LEU THR VAL THR ASP THR ILE GLY SEQRES 22 Z 290 GLN GLN ALA THR ALA GLN VAL THR VAL ILE VAL GLN PRO SEQRES 23 Z 290 GLU ASN ASN LYS SEQRES 1 A 735 MET ALA ALA ASP GLY TYR LEU PRO ASP TRP LEU GLU ASP SEQRES 2 A 735 THR LEU SER GLU GLY ILE ARG GLN TRP TRP LYS LEU LYS SEQRES 3 A 735 PRO GLY PRO PRO PRO PRO LYS PRO ALA GLU ARG HIS LYS SEQRES 4 A 735 ASP ASP SER ARG GLY LEU VAL LEU PRO GLY TYR LYS TYR SEQRES 5 A 735 LEU GLY PRO PHE ASN GLY LEU ASP LYS GLY GLU PRO VAL SEQRES 6 A 735 ASN GLU ALA ASP ALA ALA ALA LEU GLU HIS ASP LYS ALA SEQRES 7 A 735 TYR ASP ARG GLN LEU ASP SER GLY ASP ASN PRO TYR LEU SEQRES 8 A 735 LYS TYR ASN HIS ALA ASP ALA GLU PHE GLN GLU ARG LEU SEQRES 9 A 735 LYS GLU ASP THR SER PHE GLY GLY ASN LEU GLY ARG ALA SEQRES 10 A 735 VAL PHE GLN ALA LYS LYS ARG VAL LEU GLU PRO LEU GLY SEQRES 11 A 735 LEU VAL GLU GLU PRO VAL LYS THR ALA PRO GLY LYS LYS SEQRES 12 A 735 ARG PRO VAL GLU HIS SER PRO VAL GLU PRO ASP SER SER SEQRES 13 A 735 SER GLY THR GLY LYS ALA GLY GLN GLN PRO ALA ARG LYS SEQRES 14 A 735 ARG LEU ASN PHE GLY GLN THR GLY ASP ALA ASP SER VAL SEQRES 15 A 735 PRO ASP PRO GLN PRO LEU GLY GLN PRO PRO ALA ALA PRO SEQRES 16 A 735 SER GLY LEU GLY THR ASN THR MET ALA THR GLY SER GLY SEQRES 17 A 735 ALA PRO MET ALA ASP ASN ASN GLU GLY ALA ASP GLY VAL SEQRES 18 A 735 GLY ASN SER SER GLY ASN TRP HIS CYS ASP SER THR TRP SEQRES 19 A 735 MET GLY ASP ARG VAL ILE THR THR SER THR ARG THR TRP SEQRES 20 A 735 ALA LEU PRO THR TYR ASN ASN HIS LEU TYR LYS GLN ILE SEQRES 21 A 735 SER SER GLN SER GLY ALA SER ASN ASP ASN HIS TYR PHE SEQRES 22 A 735 GLY TYR SER THR PRO TRP GLY TYR PHE ASP PHE ASN ARG SEQRES 23 A 735 PHE HIS CYS HIS PHE SER PRO ARG ASP TRP GLN ARG LEU SEQRES 24 A 735 ILE ASN ASN ASN TRP GLY PHE ARG PRO LYS ARG LEU ASN SEQRES 25 A 735 PHE LYS LEU PHE ASN ILE GLN VAL LYS GLU VAL THR GLN SEQRES 26 A 735 ASN ASP GLY THR THR THR ILE ALA ASN ASN LEU THR SER SEQRES 27 A 735 THR VAL GLN VAL PHE THR ASP SER GLU TYR GLN LEU PRO SEQRES 28 A 735 TYR VAL LEU GLY SER ALA HIS GLN GLY CYS LEU PRO PRO SEQRES 29 A 735 PHE PRO ALA ASP VAL PHE MET VAL PRO GLN TYR GLY TYR SEQRES 30 A 735 LEU THR LEU ASN ASN GLY SER GLN ALA VAL CYS ARG SER SEQRES 31 A 735 SER PHE TYR CYS LEU GLU TYR PHE PRO SER GLN MET LEU SEQRES 32 A 735 ARG THR GLY ASN ASN PHE THR PHE SER TYR THR PHE GLU SEQRES 33 A 735 ASP VAL PRO PHE HIS SER SER TYR ALA HIS SER GLN SER SEQRES 34 A 735 LEU ASP ARG LEU MET ASN PRO LEU ILE ASP GLN TYR LEU SEQRES 35 A 735 TYR TYR LEU SER ARG THR ASN THR PRO SER GLY THR THR SEQRES 36 A 735 THR GLN SER ARG LEU GLN PHE SER GLN ALA GLY ALA SER SEQRES 37 A 735 ASP ILE ARG ASP GLN SER ARG ASN TRP LEU PRO GLY PRO SEQRES 38 A 735 CYS TYR ARG GLN GLN ARG VAL SER LYS THR SER ALA ASP SEQRES 39 A 735 ASN ASN ASN SER GLU TYR SER TRP THR GLY ALA THR LYS SEQRES 40 A 735 TYR HIS LEU ASN GLY ARG ASP SER LEU VAL ASN PRO GLY SEQRES 41 A 735 PRO ALA MET ALA SER HIS LYS ASP ASP GLU GLU LYS PHE SEQRES 42 A 735 PHE PRO GLN SER GLY VAL LEU ILE PHE GLY LYS GLN GLY SEQRES 43 A 735 SER GLU LYS THR ASN VAL ASP ILE GLU LYS VAL MET ILE SEQRES 44 A 735 THR ASP GLU GLU GLU ILE ARG THR THR ASN PRO VAL ALA SEQRES 45 A 735 THR GLU GLN TYR GLY SER VAL SER THR ASN LEU GLN ARG SEQRES 46 A 735 GLY ASN ARG GLN ALA ALA THR ALA ASP VAL ASN THR GLN SEQRES 47 A 735 GLY VAL LEU PRO GLY MET VAL TRP GLN ASP ARG ASP VAL SEQRES 48 A 735 TYR LEU GLN GLY PRO ILE TRP ALA LYS ILE PRO HIS THR SEQRES 49 A 735 ASP GLY HIS PHE HIS PRO SER PRO LEU MET GLY GLY PHE SEQRES 50 A 735 GLY LEU LYS HIS PRO PRO PRO GLN ILE LEU ILE LYS ASN SEQRES 51 A 735 THR PRO VAL PRO ALA ASN PRO SER THR THR PHE SER ALA SEQRES 52 A 735 ALA LYS PHE ALA SER PHE ILE THR GLN TYR SER THR GLY SEQRES 53 A 735 GLN VAL SER VAL GLU ILE GLU TRP GLU LEU GLN LYS GLU SEQRES 54 A 735 ASN SER LYS ARG TRP ASN PRO GLU ILE GLN TYR THR SER SEQRES 55 A 735 ASN TYR ASN LYS SER VAL ASN VAL ASP PHE THR VAL ASP SEQRES 56 A 735 THR ASN GLY VAL TYR SER GLU PRO ARG PRO ILE GLY THR SEQRES 57 A 735 ARG TYR LEU THR ARG ASN LEU HET MG Z 601 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *143(H2 O) HELIX 1 AA1 TYR A 252 LEU A 256 5 5 HELIX 2 AA2 SER A 267 HIS A 271 5 5 HELIX 3 AA3 ARG A 286 HIS A 290 5 5 HELIX 4 AA4 SER A 292 ASN A 301 1 10 HELIX 5 AA5 CYS A 394 PHE A 398 5 5 HELIX 6 AA6 SER A 429 LEU A 433 5 5 HELIX 7 AA7 ASP A 469 GLN A 473 5 5 HELIX 8 AA8 THR A 491 ASN A 495 5 5 HELIX 9 AA9 ASP A 553 GLU A 555 5 3 HELIX 10 AB1 GLU A 562 THR A 568 5 7 SHEET 1 AA1 4 PHE Z 416 SER Z 420 0 SHEET 2 AA1 4 THR Z 486 ASN Z 496 1 O ASN Z 492 N GLN Z 417 SHEET 3 AA1 4 GLY Z 471 VAL Z 480 -1 N TYR Z 473 O LEU Z 493 SHEET 4 AA1 4 GLN Z 441 LYS Z 448 -1 N GLU Z 445 O SER Z 476 SHEET 1 AA2 2 THR Z 426 ASP Z 429 0 SHEET 2 AA2 2 ILE Z 462 LEU Z 465 -1 O LEU Z 463 N ILE Z 428 SHEET 1 AA3 3 THR A 329 ASN A 335 0 SHEET 2 AA3 3 ASN A 303 ASN A 326 -1 N GLU A 322 O ALA A 333 SHEET 3 AA3 3 PHE A 409 THR A 414 -1 O PHE A 411 N PHE A 313 SHEET 1 AA4 5 VAL A 369 MET A 371 0 SHEET 2 AA4 5 ARG A 238 LEU A 249 1 N THR A 246 O PHE A 370 SHEET 3 AA4 5 GLN A 672 LYS A 688 -1 O TRP A 684 N VAL A 239 SHEET 4 AA4 5 ASN A 303 ASN A 326 -1 N ARG A 307 O GLU A 685 SHEET 5 AA4 5 HIS A 421 SER A 422 -1 O HIS A 421 N PHE A 306 SHEET 1 AA5 3 LYS A 258 SER A 261 0 SHEET 2 AA5 3 PHE A 273 TYR A 281 -1 O GLY A 274 N ILE A 260 SHEET 3 AA5 3 GLN A 374 LEU A 378 -1 O TYR A 375 N TRP A 279 SHEET 1 AA6 5 LYS A 258 SER A 261 0 SHEET 2 AA6 5 PHE A 273 TYR A 281 -1 O GLY A 274 N ILE A 260 SHEET 3 AA6 5 ILE A 646 ASN A 650 -1 O ILE A 648 N GLY A 280 SHEET 4 AA6 5 VAL A 340 THR A 344 -1 N GLN A 341 O LYS A 649 SHEET 5 AA6 5 GLN A 401 LEU A 403 -1 O GLN A 401 N VAL A 342 SHEET 1 AA7 2 ALA A 425 HIS A 426 0 SHEET 2 AA7 2 THR A 732 ARG A 733 1 O ARG A 733 N ALA A 425 SHEET 1 AA8 2 TYR A 443 SER A 452 0 SHEET 2 AA8 2 THR A 455 GLN A 464 -1 O THR A 455 N SER A 452 SHEET 1 AA9 2 CYS A 482 TYR A 483 0 SHEET 2 AA9 2 THR A 597 GLN A 598 -1 O GLN A 598 N CYS A 482 SHEET 1 AB1 2 ARG A 487 SER A 489 0 SHEET 2 AB1 2 PHE A 533 PRO A 535 -1 O PHE A 534 N VAL A 488 SHEET 1 AB2 2 LYS A 507 LEU A 510 0 SHEET 2 AB2 2 ARG A 513 LEU A 516 -1 O ARG A 513 N LEU A 510 SHEET 1 AB3 2 ILE A 541 GLY A 543 0 SHEET 2 AB3 2 VAL A 557 ILE A 559 -1 O MET A 558 N PHE A 542 SHEET 1 AB4 2 GLY A 577 SER A 580 0 SHEET 2 AB4 2 THR A 592 VAL A 595 -1 O ALA A 593 N VAL A 579 SHEET 1 AB5 2 TRP A 618 LYS A 620 0 SHEET 2 AB5 2 PHE A 637 LEU A 639 1 O LEU A 639 N ALA A 619 SSBOND 1 CYS A 289 CYS A 361 1555 1555 2.06 LINK O ARG Z 406 MG MG Z 601 1555 1555 2.55 LINK OD2 ASP Z 435 MG MG Z 601 1555 1555 2.76 LINK OD1 ASP Z 436 MG MG Z 601 1555 1555 2.72 LINK OD1 ASP Z 481 MG MG Z 601 1555 1555 2.83 LINK OD2 ASP Z 481 MG MG Z 601 1555 1555 2.36 CISPEP 1 LEU Z 421 PRO Z 422 0 -0.07 CISPEP 2 ASN A 518 PRO A 519 0 -0.86 SITE 1 AC1 5 ASN Z 405 ARG Z 406 ASP Z 435 ASP Z 436 SITE 2 AC1 5 ASP Z 481 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000