HEADER DE NOVO PROTEIN 16-FEB-19 6O0I TITLE NMR ENSEMBLE OF COMPUTATIONALLY DESIGNED PROTEIN XAA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESIGN CONSTRUCT XAA; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.Y.WEI,D.MOSCHIDI,S.NERLI,N.SGOURAKIS,D.BAKER REVDAT 2 14-JUN-23 6O0I 1 REMARK REVDAT 1 22-APR-20 6O0I 0 JRNL AUTH K.Y.WEI,D.MOSCHIDI,M.J.BICK,S.NERLI,A.C.MCSHAN,L.P.CARTER, JRNL AUTH 2 P.S.HUANG,D.A.FLETCHER,N.G.SGOURAKIS,S.E.BOYKEN,D.BAKER JRNL TITL COMPUTATIONAL DESIGN OF CLOSELY RELATED PROTEINS THAT ADOPT JRNL TITL 2 TWO WELL-DEFINED BUT STRUCTURALLY DIVERGENT FOLDS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 7208 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32188784 JRNL DOI 10.1073/PNAS.1914808117 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ROSETTA REMARK 3 AUTHORS : ROHL CA, STRAUSS CE, MISURA KM, BAKER D REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O0I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239756. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310.15 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 440 UM U-[15N, 12C, 2H] 13CE MET REMARK 210 13CB ALA 13CD1 ILE 13CD2 LEU REMARK 210 13CG2 VAL XAA_MAI(LV)PROS, 95% REMARK 210 H2O/5% D2O; 500 UM U-[15N, 13C, REMARK 210 2H] XAA_ILVSTAR, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 3D CM-CMHM REMARK 210 NOESY; 3D CM-NHN NOESY; 3D HNHA- REMARK 210 CMHM NOESY; 2D 1H-15N HSQC; 3D REMARK 210 HNCACB; 3D HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE, ROSETTA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 5000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 HIS A 3 -64.28 -125.81 REMARK 500 3 HIS B 3 -64.17 -125.85 REMARK 500 3 HIS C 3 -64.21 -125.86 REMARK 500 7 ASN A 26 83.89 -153.48 REMARK 500 7 ASN B 26 83.86 -153.46 REMARK 500 7 ASN C 26 83.84 -153.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30574 RELATED DB: BMRB REMARK 900 NMR ENSEMBLE OF COMPUTATIONALLY DESIGNED PROTEIN XAA DBREF 6O0I A 1 98 PDB 6O0I 6O0I 1 98 DBREF 6O0I B 1 98 PDB 6O0I 6O0I 1 98 DBREF 6O0I C 1 98 PDB 6O0I 6O0I 1 98 SEQRES 1 A 98 GLY SER HIS MET GLY THR GLU ASP LEU LYS TYR SER LEU SEQRES 2 A 98 GLU ARG LEU ARG GLU ILE LEU GLU ARG LEU GLU GLU ASN SEQRES 3 A 98 PRO SER GLU LYS GLN ILE VAL GLU ALA ILE ARG ALA ILE SEQRES 4 A 98 VAL GLU ASN ASN ALA GLN ILE VAL GLU ALA ILE ARG ALA SEQRES 5 A 98 ILE VAL GLU ASN ASN ALA GLN ILE VAL GLU ASN ASN ARG SEQRES 6 A 98 ALA ILE ILE GLU ALA LEU GLU ALA ILE GLY GLY GLY THR SEQRES 7 A 98 LYS ILE LEU GLU GLU MET LYS LYS GLN LEU LYS ASP LEU SEQRES 8 A 98 LYS ARG SER LEU GLU ARG GLY SEQRES 1 B 98 GLY SER HIS MET GLY THR GLU ASP LEU LYS TYR SER LEU SEQRES 2 B 98 GLU ARG LEU ARG GLU ILE LEU GLU ARG LEU GLU GLU ASN SEQRES 3 B 98 PRO SER GLU LYS GLN ILE VAL GLU ALA ILE ARG ALA ILE SEQRES 4 B 98 VAL GLU ASN ASN ALA GLN ILE VAL GLU ALA ILE ARG ALA SEQRES 5 B 98 ILE VAL GLU ASN ASN ALA GLN ILE VAL GLU ASN ASN ARG SEQRES 6 B 98 ALA ILE ILE GLU ALA LEU GLU ALA ILE GLY GLY GLY THR SEQRES 7 B 98 LYS ILE LEU GLU GLU MET LYS LYS GLN LEU LYS ASP LEU SEQRES 8 B 98 LYS ARG SER LEU GLU ARG GLY SEQRES 1 C 98 GLY SER HIS MET GLY THR GLU ASP LEU LYS TYR SER LEU SEQRES 2 C 98 GLU ARG LEU ARG GLU ILE LEU GLU ARG LEU GLU GLU ASN SEQRES 3 C 98 PRO SER GLU LYS GLN ILE VAL GLU ALA ILE ARG ALA ILE SEQRES 4 C 98 VAL GLU ASN ASN ALA GLN ILE VAL GLU ALA ILE ARG ALA SEQRES 5 C 98 ILE VAL GLU ASN ASN ALA GLN ILE VAL GLU ASN ASN ARG SEQRES 6 C 98 ALA ILE ILE GLU ALA LEU GLU ALA ILE GLY GLY GLY THR SEQRES 7 C 98 LYS ILE LEU GLU GLU MET LYS LYS GLN LEU LYS ASP LEU SEQRES 8 C 98 LYS ARG SER LEU GLU ARG GLY HELIX 1 AA1 GLY A 5 ASN A 26 1 22 HELIX 2 AA2 SER A 28 GLY A 75 1 48 HELIX 3 AA3 ILE A 80 GLU A 96 1 17 HELIX 4 AA4 GLY B 5 ASN B 26 1 22 HELIX 5 AA5 SER B 28 GLY B 75 1 48 HELIX 6 AA6 ILE B 80 GLU B 96 1 17 HELIX 7 AA7 GLY C 5 ASN C 26 1 22 HELIX 8 AA8 SER C 28 GLY C 75 1 48 HELIX 9 AA9 ILE C 80 GLU C 96 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1