HEADER TRANSCRIPTION/DNA 18-FEB-19 6O19 TITLE CRYSTAL STRUCTURE OF PHO7 COMPLEX WITH PHO1 PROMOTER SITE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR PHO7; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*TP*TP*AP*TP*TP*CP*GP*GP*AP*AP*AP*TP*TP*AP*AP*AP*AP*AP*CP*A)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'- COMPND 12 D(*GP*TP*TP*TP*TP*TP*AP*AP*TP*TP*TP*CP*CP*GP*AP*AP*TP*AP*AP*T)-3'); COMPND 13 CHAIN: B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: PI067, SPBC27B12.11C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 11 ORGANISM_TAXID: 4896; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 15 ORGANISM_TAXID: 4896 KEYWDS ZN2CYS6, ZINC BINUCLEAR CLUSTER TRANSCRIPTION FACTOR, TRANSCRIPTION KEYWDS 2 FACTOR-DNA COMPLEX, PHO7, TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.GARG,Y.GOLDGUR,S.SHUMAN REVDAT 5 11-OCT-23 6O19 1 REMARK REVDAT 4 04-DEC-19 6O19 1 REMARK REVDAT 3 26-JUN-19 6O19 1 JRNL REVDAT 2 08-MAY-19 6O19 1 JRNL REVDAT 1 24-APR-19 6O19 0 JRNL AUTH A.GARG,Y.GOLDGUR,A.M.SANCHEZ,B.SCHWER,S.SHUMAN JRNL TITL STRUCTURE OF FISSION YEAST TRANSCRIPTION FACTOR PHO7 BOUND JRNL TITL 2 TOPHO1PROMOTER DNA AND EFFECT OF PHO7 MUTATIONS ON DNA JRNL TITL 3 BINDING AND PHOSPHATE HOMEOSTASIS. JRNL REF MOL.CELL.BIOL. V. 39 2019 JRNL REFN ESSN 1098-5549 JRNL PMID 31010807 JRNL DOI 10.1128/MCB.00132-19 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3211: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 28905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5873 - 4.7861 0.97 1933 136 0.1501 0.1555 REMARK 3 2 4.7861 - 3.7996 0.96 1888 137 0.1387 0.1431 REMARK 3 3 3.7996 - 3.3195 0.98 1984 141 0.1536 0.1541 REMARK 3 4 3.3195 - 3.0161 0.96 1923 143 0.1804 0.2300 REMARK 3 5 3.0161 - 2.7999 0.98 1911 142 0.1962 0.1905 REMARK 3 6 2.7999 - 2.6349 0.96 1891 137 0.1892 0.2162 REMARK 3 7 2.6349 - 2.5029 0.97 1898 149 0.1828 0.2181 REMARK 3 8 2.5029 - 2.3940 0.98 2011 142 0.1960 0.2073 REMARK 3 9 2.3940 - 2.3018 0.98 1882 149 0.1943 0.2436 REMARK 3 10 2.3018 - 2.2224 0.99 1986 139 0.1921 0.2133 REMARK 3 11 2.2224 - 2.1529 0.94 1850 144 0.1909 0.2454 REMARK 3 12 2.1529 - 2.0914 0.96 1878 144 0.1899 0.2113 REMARK 3 13 2.0914 - 2.0363 0.96 1946 132 0.1908 0.2576 REMARK 3 14 2.0363 - 1.9866 0.98 1918 141 0.1921 0.2204 REMARK 3 15 1.9866 - 1.9415 0.97 1947 142 0.2003 0.2099 REMARK 3 16 1.9415 - 1.9002 0.97 1899 157 0.2090 0.1992 REMARK 3 17 1.9002 - 1.8621 0.97 1929 142 0.1974 0.2404 REMARK 3 18 1.8621 - 1.8270 0.98 1973 148 0.1878 0.2371 REMARK 3 19 1.8270 - 1.7944 0.95 1858 129 0.1948 0.2234 REMARK 3 20 1.7944 - 1.7640 0.93 1818 150 0.1933 0.2117 REMARK 3 21 1.7640 - 1.7355 0.97 1957 141 0.1959 0.2418 REMARK 3 22 1.7355 - 1.7088 0.96 1860 120 0.1986 0.2076 REMARK 3 23 1.7088 - 1.6837 0.95 1915 165 0.1969 0.2332 REMARK 3 24 1.6837 - 1.6600 0.95 1857 136 0.1993 0.2360 REMARK 3 25 1.6600 - 1.6375 0.94 1873 131 0.2131 0.2207 REMARK 3 26 1.6375 - 1.6163 0.89 1810 121 0.2304 0.2409 REMARK 3 27 1.6163 - 1.5961 0.79 1567 132 0.2310 0.2442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1383 REMARK 3 ANGLE : 1.048 2026 REMARK 3 CHIRALITY : 0.050 222 REMARK 3 PLANARITY : 0.009 121 REMARK 3 DIHEDRAL : 23.884 712 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O19 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28959 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.596 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.979 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6E33 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS.HCL PH 8.0, 0.2M NAOAC, 35% REMARK 280 PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.79050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 584 O HOH A 645 1.88 REMARK 500 O HOH A 543 O HOH B 104 2.02 REMARK 500 O HOH B 112 O HOH B 166 2.05 REMARK 500 O HOH A 607 O HOH A 624 2.06 REMARK 500 O HOH C 129 O HOH B 153 2.07 REMARK 500 O HOH B 140 O HOH B 193 2.08 REMARK 500 O HOH A 502 O HOH A 607 2.09 REMARK 500 O HOH A 529 O HOH C 181 2.10 REMARK 500 O HOH B 196 O HOH B 201 2.13 REMARK 500 O HOH A 529 O HOH A 571 2.14 REMARK 500 O HOH C 162 O HOH B 167 2.16 REMARK 500 O HOH C 178 O HOH C 188 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 280 OP1 DA B 16 2445 2.02 REMARK 500 O HOH A 521 O HOH B 152 1545 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B 6 O3' DT B 6 C3' -0.045 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 8 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA B 15 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 662 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B 205 DISTANCE = 6.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 292 SG REMARK 620 2 CYS A 308 SG 99.7 REMARK 620 3 CYS A 311 SG 109.8 103.8 REMARK 620 4 CYS A 318 SG 112.1 112.3 117.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 292 SG REMARK 620 2 CYS A 295 SG 104.4 REMARK 620 3 CYS A 302 SG 110.7 116.5 REMARK 620 4 CYS A 308 SG 97.1 111.7 114.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6E33 RELATED DB: PDB REMARK 900 DIFFERENT DNA DBREF 6O19 A 279 336 UNP O13658 YBCB_SCHPO 279 336 DBREF 6O19 C 1 20 PDB 6O19 6O19 1 20 DBREF 6O19 B 1 20 PDB 6O19 6O19 1 20 SEQADV 6O19 SER A 0 UNP O13658 EXPRESSION TAG SEQRES 1 A 59 SER GLY LYS VAL LYS LYS ARG LEU PRO GLN ALA LYS ARG SEQRES 2 A 59 ALA CYS ALA LYS CYS GLN LYS ASP ASN LYS LYS CYS ASP SEQRES 3 A 59 ASP ALA ARG PRO CYS GLN ARG CYS ILE LYS ALA LYS THR SEQRES 4 A 59 ASP CYS ILE ASP LEU PRO ARG LYS LYS ARG PRO THR GLY SEQRES 5 A 59 VAL ARG ARG GLY PRO TYR LYS SEQRES 1 C 20 DT DT DA DT DT DC DG DG DA DA DA DT DT SEQRES 2 C 20 DA DA DA DA DA DC DA SEQRES 1 B 20 DG DT DT DT DT DT DA DA DT DT DT DC DC SEQRES 2 B 20 DG DA DA DT DA DA DT HET ZN A 401 1 HET ZN A 402 1 HETNAM ZN ZINC ION FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *386(H2 O) HELIX 1 AA1 CYS A 292 ASN A 299 1 8 HELIX 2 AA2 CYS A 308 LYS A 315 1 8 LINK SG CYS A 292 ZN ZN A 401 1555 1555 2.36 LINK SG CYS A 292 ZN ZN A 402 1555 1555 2.48 LINK SG CYS A 295 ZN ZN A 402 1555 1555 2.30 LINK SG CYS A 302 ZN ZN A 402 1555 1555 2.28 LINK SG CYS A 308 ZN ZN A 401 1555 1555 2.42 LINK SG CYS A 308 ZN ZN A 402 1555 1555 2.40 LINK SG CYS A 311 ZN ZN A 401 1555 1555 2.27 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.30 CISPEP 1 ARG A 306 PRO A 307 0 3.66 SITE 1 AC1 5 CYS A 292 CYS A 308 CYS A 311 CYS A 318 SITE 2 AC1 5 ZN A 402 SITE 1 AC2 5 CYS A 292 CYS A 295 CYS A 302 CYS A 308 SITE 2 AC2 5 ZN A 401 CRYST1 53.169 37.581 57.564 90.00 104.23 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018808 0.000000 0.004768 0.00000 SCALE2 0.000000 0.026609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017922 0.00000