HEADER ISOMERASE 25-FEB-19 6O33 TITLE CRYSTAL STRUCTURE ANALYSIS OF PIN1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PIN1,PPIASE PIN1, COMPND 5 ROTAMASE PIN1; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-S.SEO,S.DHE-PAGANON REVDAT 3 15-NOV-23 6O33 1 REMARK REVDAT 2 11-OCT-23 6O33 1 REMARK REVDAT 1 26-FEB-20 6O33 0 JRNL AUTH H.-S.SEO,S.DHE-PAGANON JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF PIN1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.270 REMARK 3 FREE R VALUE TEST SET COUNT : 947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6622 - 3.3278 1.00 2634 137 0.1708 0.1980 REMARK 3 2 3.3278 - 2.6416 1.00 2447 158 0.1950 0.2361 REMARK 3 3 2.6416 - 2.3078 1.00 2412 128 0.2037 0.2659 REMARK 3 4 2.3078 - 2.0968 1.00 2403 144 0.2142 0.2625 REMARK 3 5 2.0968 - 1.9465 1.00 2372 133 0.2297 0.2832 REMARK 3 6 1.9465 - 1.8318 1.00 2382 126 0.2716 0.2950 REMARK 3 7 1.8318 - 1.7400 1.00 2372 121 0.3096 0.3353 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9329 -9.5264 11.9599 REMARK 3 T TENSOR REMARK 3 T11: 0.2713 T22: 0.3092 REMARK 3 T33: 0.3093 T12: -0.0132 REMARK 3 T13: -0.0331 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 1.4427 L22: 1.6248 REMARK 3 L33: 1.9545 L12: 0.1128 REMARK 3 L13: 1.6218 L23: 0.4298 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.0192 S13: 0.1692 REMARK 3 S21: -0.1131 S22: -0.1319 S23: -0.3506 REMARK 3 S31: -0.2601 S32: 0.3609 S33: 0.0013 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9851 -7.7046 9.3306 REMARK 3 T TENSOR REMARK 3 T11: 0.3482 T22: 0.3091 REMARK 3 T33: 0.2717 T12: -0.0050 REMARK 3 T13: -0.0293 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.6307 L22: 1.2002 REMARK 3 L33: 0.5085 L12: 0.0378 REMARK 3 L13: 0.5175 L23: 0.1323 REMARK 3 S TENSOR REMARK 3 S11: -0.0527 S12: -0.3737 S13: 0.2292 REMARK 3 S21: 0.5457 S22: -0.1397 S23: 0.3576 REMARK 3 S31: -0.4034 S32: -0.1907 S33: -0.0141 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9918 -31.8314 11.6441 REMARK 3 T TENSOR REMARK 3 T11: 0.4120 T22: 0.3118 REMARK 3 T33: 0.3980 T12: 0.0403 REMARK 3 T13: 0.0002 T23: 0.1317 REMARK 3 L TENSOR REMARK 3 L11: 0.5726 L22: 0.9522 REMARK 3 L33: 1.4575 L12: 0.5637 REMARK 3 L13: -0.4047 L23: -0.0505 REMARK 3 S TENSOR REMARK 3 S11: -0.0857 S12: -0.3385 S13: -0.7235 REMARK 3 S21: 0.1991 S22: -0.0519 S23: 0.0741 REMARK 3 S31: 0.5724 S32: 0.0207 S33: -0.0812 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9687 -29.3857 0.4510 REMARK 3 T TENSOR REMARK 3 T11: 0.3478 T22: 0.2599 REMARK 3 T33: 0.3396 T12: 0.0729 REMARK 3 T13: -0.0062 T23: 0.0660 REMARK 3 L TENSOR REMARK 3 L11: 1.2823 L22: 2.0237 REMARK 3 L33: 2.0910 L12: 0.4299 REMARK 3 L13: -0.0904 L23: -0.1230 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: 0.1522 S13: -0.3155 REMARK 3 S21: -0.3135 S22: -0.0791 S23: -0.2918 REMARK 3 S31: 0.4335 S32: 0.3875 S33: -0.0107 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3947 -27.9629 11.9776 REMARK 3 T TENSOR REMARK 3 T11: 0.3485 T22: 0.2606 REMARK 3 T33: 0.3056 T12: -0.0166 REMARK 3 T13: -0.0191 T23: 0.0932 REMARK 3 L TENSOR REMARK 3 L11: 2.4700 L22: 1.4277 REMARK 3 L33: 2.0151 L12: -0.4832 REMARK 3 L13: -0.8673 L23: 0.0364 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.1504 S13: -0.4663 REMARK 3 S21: 0.1170 S22: -0.1599 S23: 0.0232 REMARK 3 S31: 0.5220 S32: -0.0402 S33: -0.0102 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(220) SIDE BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18036 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 34.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.2, 3.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.59000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 24.50500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 24.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.88500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 24.50500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 24.50500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.29500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 24.50500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 24.50500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.88500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 24.50500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 24.50500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.29500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.59000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 ASN A 40 REMARK 465 SER A 41 REMARK 465 SER A 42 REMARK 465 SER A 43 REMARK 465 GLY A 44 REMARK 465 GLY A 45 REMARK 465 LYS A 46 REMARK 465 ASN A 47 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 408 O HOH A 412 1.82 REMARK 500 O HOH A 390 O HOH A 408 1.94 REMARK 500 O HOH A 303 O HOH A 366 2.02 REMARK 500 O HOH A 393 O HOH A 401 2.02 REMARK 500 OE1 GLN A 94 O HOH A 301 2.12 REMARK 500 OE2 GLU A 104 O HOH A 302 2.13 REMARK 500 O HOH A 386 O HOH A 403 2.15 REMARK 500 OG SER A 18 O HOH A 303 2.15 REMARK 500 O3 SO4 A 201 O HOH A 304 2.16 REMARK 500 OE1 GLN A 82 O HOH A 305 2.16 REMARK 500 O HOH A 304 O HOH A 311 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 301 O HOH A 351 7555 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 -166.98 -73.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 2 YCP B 3 -148.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 5 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 DBREF 6O33 A 1 163 UNP Q13526 PIN1_HUMAN 1 163 DBREF 6O33 B 1 6 PDB 6O33 6O33 1 6 SEQADV 6O33 GLN A 77 UNP Q13526 LYS 77 ENGINEERED MUTATION SEQADV 6O33 GLN A 82 UNP Q13526 LYS 82 ENGINEERED MUTATION SEQRES 1 A 163 MET ALA ASP GLU GLU LYS LEU PRO PRO GLY TRP GLU LYS SEQRES 2 A 163 ARG MET SER ARG SER SER GLY ARG VAL TYR TYR PHE ASN SEQRES 3 A 163 HIS ILE THR ASN ALA SER GLN TRP GLU ARG PRO SER GLY SEQRES 4 A 163 ASN SER SER SER GLY GLY LYS ASN GLY GLN GLY GLU PRO SEQRES 5 A 163 ALA ARG VAL ARG CYS SER HIS LEU LEU VAL LYS HIS SER SEQRES 6 A 163 GLN SER ARG ARG PRO SER SER TRP ARG GLN GLU GLN ILE SEQRES 7 A 163 THR ARG THR GLN GLU GLU ALA LEU GLU LEU ILE ASN GLY SEQRES 8 A 163 TYR ILE GLN LYS ILE LYS SER GLY GLU GLU ASP PHE GLU SEQRES 9 A 163 SER LEU ALA SER GLN PHE SER ASP CYS SER SER ALA LYS SEQRES 10 A 163 ALA ARG GLY ASP LEU GLY ALA PHE SER ARG GLY GLN MET SEQRES 11 A 163 GLN LYS PRO PHE GLU ASP ALA SER PHE ALA LEU ARG THR SEQRES 12 A 163 GLY GLU MET SER GLY PRO VAL PHE THR ASP SER GLY ILE SEQRES 13 A 163 HIS ILE ILE LEU ARG THR GLU SEQRES 1 B 6 ACE GLU YCP NAL ARG NH2 HET ACE B 1 3 HET YCP B 3 8 HET NAL B 4 15 HET NH2 B 6 1 HET SO4 A 201 5 HETNAM ACE ACETYL GROUP HETNAM YCP (2S)-PIPERIDINE-2-CARBOXYLIC ACID HETNAM NAL BETA-(2-NAPHTHYL)-ALANINE HETNAM NH2 AMINO GROUP HETNAM SO4 SULFATE ION FORMUL 2 ACE C2 H4 O FORMUL 2 YCP C6 H11 N O2 FORMUL 2 NAL C13 H13 N O2 FORMUL 2 NH2 H2 N FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *116(H2 O) HELIX 1 AA1 THR A 81 GLY A 99 1 19 HELIX 2 AA2 ASP A 102 SER A 111 1 10 HELIX 3 AA3 CYS A 113 ARG A 119 5 7 HELIX 4 AA4 GLN A 131 LEU A 141 1 11 SHEET 1 AA1 3 TRP A 11 MET A 15 0 SHEET 2 AA1 3 VAL A 22 ASN A 26 -1 O TYR A 23 N ARG A 14 SHEET 3 AA1 3 SER A 32 GLN A 33 -1 O GLN A 33 N TYR A 24 SHEET 1 AA2 4 ASP A 121 PHE A 125 0 SHEET 2 AA2 4 VAL A 55 VAL A 62 -1 N VAL A 55 O PHE A 125 SHEET 3 AA2 4 GLY A 155 GLU A 163 -1 O LEU A 160 N SER A 58 SHEET 4 AA2 4 VAL A 150 THR A 152 -1 N VAL A 150 O HIS A 157 LINK C ACE B 1 N GLU B 2 1555 1555 1.33 LINK C GLU B 2 N YCP B 3 1555 1555 1.34 LINK C YCP B 3 N NAL B 4 1555 1555 1.33 LINK C NAL B 4 N ARG B 5 1555 1555 1.33 LINK C ARG B 5 N NH2 B 6 1555 1555 1.33 SITE 1 AC1 9 ARG A 14 PRO A 52 ARG A 161 HOH A 304 SITE 2 AC1 9 HOH A 311 HOH A 327 HOH A 347 HOH A 359 SITE 3 AC1 9 HOH A 376 CRYST1 49.010 49.010 137.180 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020404 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007290 0.00000