HEADER HYDROLASE 27-FEB-19 6O3P TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF MOUSE NUDT12 IN COMPLEX TITLE 2 WITH AMP AND 3 MG2+ IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL NADH PYROPHOSPHATASE NUDT12; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 12,NUDIX MOTIF COMPND 5 12; COMPND 6 EC: 3.6.1.22; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NUDT12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUDIX PROTEIN, DENADDING ENZYME, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.TONG,Y.WU REVDAT 3 11-OCT-23 6O3P 1 LINK REVDAT 2 18-DEC-19 6O3P 1 REMARK REVDAT 1 29-MAY-19 6O3P 0 JRNL AUTH E.GRUDZIEN-NOGALSKA,Y.WU,X.JIAO,H.CUI,M.K.MATEYAK,R.P.HART, JRNL AUTH 2 L.TONG,M.KILEDJIAN JRNL TITL STRUCTURAL AND MECHANISTIC BASIS OF MAMMALIAN NUDT12 RNA JRNL TITL 2 DENADDING. JRNL REF NAT.CHEM.BIOL. V. 15 575 2019 JRNL REFN ESSN 1552-4469 JRNL PMID 31101919 JRNL DOI 10.1038/S41589-019-0293-7 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 76425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.620 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.6938 - 3.8482 0.92 5433 144 0.1447 0.1704 REMARK 3 2 3.8482 - 3.0545 0.94 5576 149 0.1656 0.2262 REMARK 3 3 3.0545 - 2.6684 0.91 5359 148 0.1826 0.2069 REMARK 3 4 2.6684 - 2.4245 0.94 5584 156 0.1805 0.2142 REMARK 3 5 2.4245 - 2.2507 0.91 5363 144 0.1756 0.2422 REMARK 3 6 2.2507 - 2.1180 0.91 5372 139 0.1826 0.2247 REMARK 3 7 2.1180 - 2.0119 0.94 5572 147 0.1761 0.1858 REMARK 3 8 2.0119 - 1.9243 0.94 5564 146 0.1871 0.2237 REMARK 3 9 1.9243 - 1.8503 0.89 5235 146 0.2528 0.3161 REMARK 3 10 1.8503 - 1.7864 0.93 5532 159 0.2301 0.2774 REMARK 3 11 1.7864 - 1.7305 0.93 5542 141 0.2451 0.2814 REMARK 3 12 1.7305 - 1.6811 0.93 5513 145 0.2703 0.2962 REMARK 3 13 1.6811 - 1.6368 0.86 5053 135 0.3187 0.3331 REMARK 3 14 1.6368 - 1.5969 0.63 3728 100 0.3883 0.4802 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5149 REMARK 3 ANGLE : 1.350 7008 REMARK 3 CHIRALITY : 0.087 771 REMARK 3 PLANARITY : 0.010 902 REMARK 3 DIHEDRAL : 6.500 4325 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 123:232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3373 31.9814 -32.7606 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: 0.2468 REMARK 3 T33: 0.2228 T12: 0.0356 REMARK 3 T13: 0.0613 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 2.2602 L22: 4.6599 REMARK 3 L33: 2.8846 L12: -0.1627 REMARK 3 L13: -1.3056 L23: -0.8703 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: 0.1139 S13: -0.0410 REMARK 3 S21: -0.2783 S22: 0.0502 S23: -0.3582 REMARK 3 S31: -0.0059 S32: 0.1614 S33: -0.0338 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 233:307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3676 39.9832 -21.8953 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.2790 REMARK 3 T33: 0.2861 T12: 0.0054 REMARK 3 T13: 0.0795 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.1057 L22: 1.4369 REMARK 3 L33: 5.1415 L12: -0.0116 REMARK 3 L13: 0.1547 L23: 0.3099 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: 0.0398 S13: 0.1406 REMARK 3 S21: -0.2332 S22: 0.0916 S23: -0.1453 REMARK 3 S31: -0.2388 S32: 0.3736 S33: -0.0415 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 308:390 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8540 49.0211 -19.5229 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.1529 REMARK 3 T33: 0.1945 T12: -0.0207 REMARK 3 T13: 0.0096 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.7257 L22: 2.4644 REMARK 3 L33: 1.9705 L12: -1.4179 REMARK 3 L13: 0.5772 L23: -0.9415 REMARK 3 S TENSOR REMARK 3 S11: 0.1065 S12: 0.0158 S13: 0.1428 REMARK 3 S21: -0.1463 S22: -0.0599 S23: -0.0504 REMARK 3 S31: -0.0646 S32: -0.0210 S33: -0.0293 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 391:457 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0307 55.2740 -29.5816 REMARK 3 T TENSOR REMARK 3 T11: 0.4268 T22: 0.2323 REMARK 3 T33: 0.2683 T12: 0.0353 REMARK 3 T13: 0.0384 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 2.8435 L22: 1.5127 REMARK 3 L33: 0.6818 L12: -1.5535 REMARK 3 L13: -0.7040 L23: 0.1486 REMARK 3 S TENSOR REMARK 3 S11: 0.2815 S12: 0.2552 S13: 0.3569 REMARK 3 S21: -0.5776 S22: -0.1610 S23: -0.2468 REMARK 3 S31: -0.2972 S32: -0.0293 S33: -0.1059 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 124:225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5732 50.8852 6.6853 REMARK 3 T TENSOR REMARK 3 T11: 0.2102 T22: 0.2539 REMARK 3 T33: 0.1888 T12: 0.0480 REMARK 3 T13: -0.0018 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 1.8655 L22: 3.7447 REMARK 3 L33: 3.7651 L12: -0.4599 REMARK 3 L13: -0.7434 L23: -0.4638 REMARK 3 S TENSOR REMARK 3 S11: -0.1434 S12: -0.2265 S13: 0.0528 REMARK 3 S21: 0.2752 S22: 0.2068 S23: 0.1810 REMARK 3 S31: -0.2252 S32: -0.2558 S33: -0.0423 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 226:261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7460 39.2758 11.7013 REMARK 3 T TENSOR REMARK 3 T11: 0.4295 T22: 0.4584 REMARK 3 T33: 0.3103 T12: 0.0987 REMARK 3 T13: 0.0082 T23: 0.0676 REMARK 3 L TENSOR REMARK 3 L11: 2.4615 L22: 5.0478 REMARK 3 L33: 2.0442 L12: 1.1610 REMARK 3 L13: -1.0688 L23: -1.3237 REMARK 3 S TENSOR REMARK 3 S11: -0.1630 S12: -0.5869 S13: -0.4142 REMARK 3 S21: 0.9261 S22: 0.2064 S23: -0.0953 REMARK 3 S31: 0.2408 S32: 0.1339 S33: -0.0086 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 262:307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1743 47.0598 -2.7818 REMARK 3 T TENSOR REMARK 3 T11: 0.1683 T22: 0.2066 REMARK 3 T33: 0.1946 T12: -0.0299 REMARK 3 T13: -0.0213 T23: -0.0585 REMARK 3 L TENSOR REMARK 3 L11: 4.3133 L22: 2.0537 REMARK 3 L33: 2.8320 L12: 0.1356 REMARK 3 L13: -1.8235 L23: -0.4880 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: -0.1394 S13: 0.2909 REMARK 3 S21: 0.0731 S22: 0.0909 S23: -0.2643 REMARK 3 S31: -0.1284 S32: 0.3263 S33: -0.0778 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 308:417 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9336 27.9011 -16.7930 REMARK 3 T TENSOR REMARK 3 T11: 0.2255 T22: 0.1768 REMARK 3 T33: 0.1701 T12: 0.0069 REMARK 3 T13: -0.0098 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.9559 L22: 3.2929 REMARK 3 L33: 0.7353 L12: 0.5333 REMARK 3 L13: 0.1444 L23: 0.3559 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: 0.0242 S13: -0.0934 REMARK 3 S21: -0.2610 S22: -0.0344 S23: 0.0106 REMARK 3 S31: 0.1057 S32: -0.0083 S33: 0.0189 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 418:460 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6005 21.2118 -12.7858 REMARK 3 T TENSOR REMARK 3 T11: 0.2506 T22: 0.2437 REMARK 3 T33: 0.2614 T12: -0.0100 REMARK 3 T13: 0.0033 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 2.8512 L22: 3.5243 REMARK 3 L33: 1.6907 L12: 1.5934 REMARK 3 L13: 0.7044 L23: 1.5561 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: -0.0193 S13: -0.2585 REMARK 3 S21: 0.0923 S22: -0.2057 S23: 0.4395 REMARK 3 S31: 0.2529 S32: -0.2421 S33: 0.1997 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000239960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76455 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 52.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5IW4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5), 24% (W/V) REMARK 280 PEG2000MME, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 122 REMARK 465 GLU A 204 REMARK 465 MET A 205 REMARK 465 ARG A 206 REMARK 465 LYS A 207 REMARK 465 GLY A 208 REMARK 465 SER A 209 REMARK 465 PRO A 210 REMARK 465 ALA A 211 REMARK 465 GLN A 212 REMARK 465 ALA A 213 REMARK 465 GLY A 214 REMARK 465 GLY A 215 REMARK 465 VAL A 216 REMARK 465 PRO A 217 REMARK 465 GLU A 218 REMARK 465 ALA A 219 REMARK 465 ALA A 220 REMARK 465 ALA A 221 REMARK 465 GLU A 238 REMARK 465 GLU A 239 REMARK 465 PHE A 240 REMARK 465 LYS A 241 REMARK 465 GLN A 242 REMARK 465 ARG A 243 REMARK 465 HIS A 244 REMARK 465 LYS A 435 REMARK 465 GLN A 436 REMARK 465 MET A 458 REMARK 465 ASN A 459 REMARK 465 PRO A 460 REMARK 465 GLY B 122 REMARK 465 SER B 123 REMARK 465 GLY B 208 REMARK 465 SER B 209 REMARK 465 PRO B 210 REMARK 465 ALA B 211 REMARK 465 GLN B 212 REMARK 465 ALA B 213 REMARK 465 GLY B 214 REMARK 465 GLY B 215 REMARK 465 VAL B 216 REMARK 465 PRO B 217 REMARK 465 GLU B 218 REMARK 465 ALA B 219 REMARK 465 LYS B 433 REMARK 465 GLY B 434 REMARK 465 LYS B 435 REMARK 465 GLN B 436 REMARK 465 GLN B 437 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 342 O HOH B 601 2.04 REMARK 500 O ILE B 232 O HOH B 602 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 387 CB CYS B 387 SG -0.110 REMARK 500 GLU B 415 CD GLU B 415 OE1 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 127 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 368 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 368 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 128 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 170 -71.92 -93.18 REMARK 500 SER A 394 45.92 -155.41 REMARK 500 SER A 394 52.24 -158.34 REMARK 500 THR A 432 -156.54 -70.57 REMARK 500 VAL B 385 -55.61 -120.09 REMARK 500 SER B 394 50.56 -155.13 REMARK 500 SER B 394 55.49 -157.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 284 SG REMARK 620 2 CYS A 287 SG 114.8 REMARK 620 3 CYS A 302 SG 110.3 99.6 REMARK 620 4 CYS A 307 SG 105.3 108.8 118.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 354 O REMARK 620 2 GLU A 374 OE2 92.3 REMARK 620 3 GLU A 415 OE1 179.5 88.1 REMARK 620 4 AMP A 501 O3P 95.7 82.6 84.3 REMARK 620 5 HOH A 622 O 88.8 92.8 91.2 173.7 REMARK 620 6 HOH A 639 O 89.5 175.2 90.0 92.9 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 370 OE1 REMARK 620 2 GLU A 374 OE2 85.1 REMARK 620 3 GLU A 415 OE2 166.0 81.4 REMARK 620 4 AMP A 501 O3P 97.3 82.3 84.6 REMARK 620 5 HOH A 638 O 90.9 101.7 88.2 171.1 REMARK 620 6 HOH A 694 O 103.8 168.1 90.1 88.7 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 370 OE2 REMARK 620 2 AMP A 501 O2P 93.6 REMARK 620 3 HOH A 644 O 169.7 92.3 REMARK 620 4 HOH A 650 O 85.8 97.2 85.1 REMARK 620 5 HOH A 674 O 92.0 162.2 84.8 100.0 REMARK 620 6 HOH A 694 O 102.4 85.5 86.5 171.2 76.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 284 SG REMARK 620 2 CYS B 287 SG 114.8 REMARK 620 3 CYS B 302 SG 112.2 97.9 REMARK 620 4 CYS B 307 SG 106.9 108.0 117.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 354 O REMARK 620 2 GLU B 374 OE2 94.7 REMARK 620 3 GLU B 415 OE1 174.5 81.4 REMARK 620 4 AMP B 502 O2P 93.4 78.0 82.1 REMARK 620 5 HOH B 625 O 87.5 95.7 96.7 173.7 REMARK 620 6 HOH B 631 O 90.2 171.3 93.1 94.5 91.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 370 OE1 REMARK 620 2 GLU B 374 OE2 88.8 REMARK 620 3 GLU B 415 OE2 174.1 85.4 REMARK 620 4 AMP B 502 O2P 90.7 82.7 89.0 REMARK 620 5 HOH B 609 O 92.1 102.9 88.7 173.7 REMARK 620 6 HOH B 712 O 96.6 170.5 89.3 89.4 84.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 370 OE2 REMARK 620 2 AMP B 502 O1P 99.5 REMARK 620 3 HOH B 652 O 87.8 96.3 REMARK 620 4 HOH B 655 O 170.9 86.5 84.7 REMARK 620 5 HOH B 690 O 86.8 173.5 82.2 87.1 REMARK 620 6 HOH B 712 O 97.3 89.8 171.2 89.5 90.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 505 DBREF 6O3P A 126 460 UNP Q9DCN1 NUD12_MOUSE 126 460 DBREF 6O3P B 126 460 UNP Q9DCN1 NUD12_MOUSE 126 460 SEQADV 6O3P GLY A 122 UNP Q9DCN1 EXPRESSION TAG SEQADV 6O3P SER A 123 UNP Q9DCN1 EXPRESSION TAG SEQADV 6O3P HIS A 124 UNP Q9DCN1 EXPRESSION TAG SEQADV 6O3P MET A 125 UNP Q9DCN1 EXPRESSION TAG SEQADV 6O3P ALA A 219 UNP Q9DCN1 GLU 219 ENGINEERED MUTATION SEQADV 6O3P ALA A 220 UNP Q9DCN1 GLU 220 ENGINEERED MUTATION SEQADV 6O3P ALA A 221 UNP Q9DCN1 GLU 221 ENGINEERED MUTATION SEQADV 6O3P GLY B 122 UNP Q9DCN1 EXPRESSION TAG SEQADV 6O3P SER B 123 UNP Q9DCN1 EXPRESSION TAG SEQADV 6O3P HIS B 124 UNP Q9DCN1 EXPRESSION TAG SEQADV 6O3P MET B 125 UNP Q9DCN1 EXPRESSION TAG SEQADV 6O3P ALA B 219 UNP Q9DCN1 GLU 219 ENGINEERED MUTATION SEQADV 6O3P ALA B 220 UNP Q9DCN1 GLU 220 ENGINEERED MUTATION SEQADV 6O3P ALA B 221 UNP Q9DCN1 GLU 221 ENGINEERED MUTATION SEQRES 1 A 339 GLY SER HIS MET LEU ASP ARG ARG SER ASP LYS ARG ASN SEQRES 2 A 339 ASN SER ASP TRP LEU GLN ALA LYS GLU SER HIS PRO THR SEQRES 3 A 339 THR VAL TYR LEU LEU PHE SER ASP LEU ASN PRO LEU VAL SEQRES 4 A 339 THR LEU GLY GLY ASN LYS GLU SER SER GLN GLN PRO GLU SEQRES 5 A 339 VAL ARG LEU CYS GLN LEU ASN TYR PRO ASP VAL LYS GLY SEQRES 6 A 339 TYR LEU ALA GLN PRO GLU LYS ILE THR LEU VAL PHE LEU SEQRES 7 A 339 GLY VAL GLU LEU GLU MET ARG LYS GLY SER PRO ALA GLN SEQRES 8 A 339 ALA GLY GLY VAL PRO GLU ALA ALA ALA ASP GLY LEU VAL SEQRES 9 A 339 ALA TRP PHE ALA LEU GLY ILE GLU PRO GLY ALA ALA GLU SEQRES 10 A 339 GLU PHE LYS GLN ARG HIS GLU ASN CYS TYR PHE LEU HIS SEQRES 11 A 339 PRO PRO MET PRO ALA LEU LEU GLN LEU LYS GLU LYS GLU SEQRES 12 A 339 ALA GLY VAL VAL ALA GLN ALA ARG SER VAL LEU ALA TRP SEQRES 13 A 339 HIS SER ARG TYR LYS PHE CYS PRO THR CYS GLY SER ALA SEQRES 14 A 339 THR LYS ILE GLU GLU GLY GLY TYR LYS ARG VAL CYS VAL SEQRES 15 A 339 ARG GLU THR CYS PRO SER LEU GLN GLY VAL HIS ASN THR SEQRES 16 A 339 SER TYR PRO ARG VAL ASP PRO VAL VAL ILE MET GLN VAL SEQRES 17 A 339 ILE HIS PRO ASP GLY THR LYS CYS LEU LEU GLY ARG GLN SEQRES 18 A 339 LYS ARG PHE PRO PRO GLY MET PHE THR CYS LEU ALA GLY SEQRES 19 A 339 PHE ILE GLU PRO GLY GLU THR ILE GLU ASP ALA VAL ARG SEQRES 20 A 339 ARG GLU VAL GLU GLU GLU SER GLY VAL LYS VAL GLY HIS SEQRES 21 A 339 VAL GLN TYR VAL SER CYS GLN PRO TRP PRO MET PRO SER SEQRES 22 A 339 SER LEU MET ILE GLY CYS LEU ALA VAL ALA VAL SER THR SEQRES 23 A 339 GLU ILE LYS VAL ASP LYS ASN GLU ILE GLU ASP ALA ARG SEQRES 24 A 339 TRP PHE THR ARG GLU GLN VAL VAL ASP VAL LEU THR LYS SEQRES 25 A 339 GLY LYS GLN GLN ALA PHE PHE VAL PRO PRO SER ARG ALA SEQRES 26 A 339 ILE ALA HIS GLN LEU ILE LYS HIS TRP VAL GLY MET ASN SEQRES 27 A 339 PRO SEQRES 1 B 339 GLY SER HIS MET LEU ASP ARG ARG SER ASP LYS ARG ASN SEQRES 2 B 339 ASN SER ASP TRP LEU GLN ALA LYS GLU SER HIS PRO THR SEQRES 3 B 339 THR VAL TYR LEU LEU PHE SER ASP LEU ASN PRO LEU VAL SEQRES 4 B 339 THR LEU GLY GLY ASN LYS GLU SER SER GLN GLN PRO GLU SEQRES 5 B 339 VAL ARG LEU CYS GLN LEU ASN TYR PRO ASP VAL LYS GLY SEQRES 6 B 339 TYR LEU ALA GLN PRO GLU LYS ILE THR LEU VAL PHE LEU SEQRES 7 B 339 GLY VAL GLU LEU GLU MET ARG LYS GLY SER PRO ALA GLN SEQRES 8 B 339 ALA GLY GLY VAL PRO GLU ALA ALA ALA ASP GLY LEU VAL SEQRES 9 B 339 ALA TRP PHE ALA LEU GLY ILE GLU PRO GLY ALA ALA GLU SEQRES 10 B 339 GLU PHE LYS GLN ARG HIS GLU ASN CYS TYR PHE LEU HIS SEQRES 11 B 339 PRO PRO MET PRO ALA LEU LEU GLN LEU LYS GLU LYS GLU SEQRES 12 B 339 ALA GLY VAL VAL ALA GLN ALA ARG SER VAL LEU ALA TRP SEQRES 13 B 339 HIS SER ARG TYR LYS PHE CYS PRO THR CYS GLY SER ALA SEQRES 14 B 339 THR LYS ILE GLU GLU GLY GLY TYR LYS ARG VAL CYS VAL SEQRES 15 B 339 ARG GLU THR CYS PRO SER LEU GLN GLY VAL HIS ASN THR SEQRES 16 B 339 SER TYR PRO ARG VAL ASP PRO VAL VAL ILE MET GLN VAL SEQRES 17 B 339 ILE HIS PRO ASP GLY THR LYS CYS LEU LEU GLY ARG GLN SEQRES 18 B 339 LYS ARG PHE PRO PRO GLY MET PHE THR CYS LEU ALA GLY SEQRES 19 B 339 PHE ILE GLU PRO GLY GLU THR ILE GLU ASP ALA VAL ARG SEQRES 20 B 339 ARG GLU VAL GLU GLU GLU SER GLY VAL LYS VAL GLY HIS SEQRES 21 B 339 VAL GLN TYR VAL SER CYS GLN PRO TRP PRO MET PRO SER SEQRES 22 B 339 SER LEU MET ILE GLY CYS LEU ALA VAL ALA VAL SER THR SEQRES 23 B 339 GLU ILE LYS VAL ASP LYS ASN GLU ILE GLU ASP ALA ARG SEQRES 24 B 339 TRP PHE THR ARG GLU GLN VAL VAL ASP VAL LEU THR LYS SEQRES 25 B 339 GLY LYS GLN GLN ALA PHE PHE VAL PRO PRO SER ARG ALA SEQRES 26 B 339 ILE ALA HIS GLN LEU ILE LYS HIS TRP VAL GLY MET ASN SEQRES 27 B 339 PRO HET AMP A 501 23 HET MG A 502 1 HET MG A 503 1 HET MG A 504 1 HET ZN A 505 1 HET ZN B 501 1 HET AMP B 502 23 HET MG B 503 1 HET MG B 504 1 HET MG B 505 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 4 MG 6(MG 2+) FORMUL 7 ZN 2(ZN 2+) FORMUL 13 HOH *290(H2 O) HELIX 1 AA1 ARG A 129 ARG A 133 5 5 HELIX 2 AA2 ASN A 135 SER A 144 1 10 HELIX 3 AA3 ASN A 165 SER A 169 5 5 HELIX 4 AA4 ASN A 180 ALA A 189 1 10 HELIX 5 AA5 GLN A 190 ILE A 194 5 5 HELIX 6 AA6 PRO A 252 LEU A 257 1 6 HELIX 7 AA7 LEU A 258 LEU A 260 5 3 HELIX 8 AA8 LYS A 261 TYR A 281 1 21 HELIX 9 AA9 GLU A 295 TYR A 298 5 4 HELIX 10 AB1 CYS A 307 GLN A 311 5 5 HELIX 11 AB2 HIS A 314 TYR A 318 5 5 HELIX 12 AB3 THR A 362 GLY A 376 1 15 HELIX 13 AB4 ARG A 424 THR A 432 1 9 HELIX 14 AB5 ALA A 446 GLY A 457 1 12 HELIX 15 AB6 ARG B 129 ARG B 133 5 5 HELIX 16 AB7 ASN B 135 SER B 144 1 10 HELIX 17 AB8 ASN B 180 ALA B 189 1 10 HELIX 18 AB9 GLN B 190 GLU B 192 5 3 HELIX 19 AC1 GLU B 233 GLN B 242 1 10 HELIX 20 AC2 PRO B 252 LEU B 257 1 6 HELIX 21 AC3 LEU B 258 LEU B 260 5 3 HELIX 22 AC4 LYS B 261 TYR B 281 1 21 HELIX 23 AC5 GLU B 295 TYR B 298 5 4 HELIX 24 AC6 CYS B 307 GLN B 311 5 5 HELIX 25 AC7 HIS B 314 TYR B 318 5 5 HELIX 26 AC8 THR B 362 GLY B 376 1 15 HELIX 27 AC9 ARG B 424 THR B 432 1 9 HELIX 28 AD1 ALA B 446 MET B 458 1 13 SHEET 1 AA1 6 LEU A 126 ASP A 127 0 SHEET 2 AA1 6 THR A 195 GLU A 202 -1 O VAL A 201 N ASP A 127 SHEET 3 AA1 6 ALA A 226 ILE A 232 -1 O TRP A 227 N GLY A 200 SHEET 4 AA1 6 VAL A 149 SER A 154 1 N LEU A 151 O LEU A 230 SHEET 5 AA1 6 ASN A 157 LEU A 162 -1 O LEU A 159 N LEU A 152 SHEET 6 AA1 6 VAL A 174 LEU A 176 -1 O ARG A 175 N THR A 161 SHEET 1 AA2 6 LEU A 126 ASP A 127 0 SHEET 2 AA2 6 THR A 195 GLU A 202 -1 O VAL A 201 N ASP A 127 SHEET 3 AA2 6 ALA A 226 ILE A 232 -1 O TRP A 227 N GLY A 200 SHEET 4 AA2 6 VAL A 149 SER A 154 1 N LEU A 151 O LEU A 230 SHEET 5 AA2 6 ASN A 157 LEU A 162 -1 O LEU A 159 N LEU A 152 SHEET 6 AA2 6 CYS A 247 PHE A 249 -1 O TYR A 248 N VAL A 160 SHEET 1 AA3 2 THR A 291 GLU A 294 0 SHEET 2 AA3 2 LYS A 299 CYS A 302 -1 O LYS A 299 N GLU A 294 SHEET 1 AA4 4 LEU A 353 PHE A 356 0 SHEET 2 AA4 4 ASP A 322 ILE A 330 -1 N VAL A 325 O GLY A 355 SHEET 3 AA4 4 SER A 395 ALA A 404 1 O ILE A 398 N VAL A 324 SHEET 4 AA4 4 VAL A 379 TRP A 390 -1 N TRP A 390 O SER A 395 SHEET 1 AA5 4 LEU A 353 PHE A 356 0 SHEET 2 AA5 4 ASP A 322 ILE A 330 -1 N VAL A 325 O GLY A 355 SHEET 3 AA5 4 LYS A 336 ARG A 341 -1 O LEU A 338 N VAL A 329 SHEET 4 AA5 4 ASP A 418 THR A 423 -1 O PHE A 422 N CYS A 337 SHEET 1 AA6 6 LEU B 126 ASP B 127 0 SHEET 2 AA6 6 ILE B 194 GLU B 202 -1 O VAL B 201 N ASP B 127 SHEET 3 AA6 6 ALA B 226 ILE B 232 -1 O GLY B 231 N THR B 195 SHEET 4 AA6 6 VAL B 149 SER B 154 1 N LEU B 151 O LEU B 230 SHEET 5 AA6 6 ASN B 157 LEU B 162 -1 O ASN B 157 N SER B 154 SHEET 6 AA6 6 VAL B 174 LEU B 176 -1 O ARG B 175 N THR B 161 SHEET 1 AA7 6 LEU B 126 ASP B 127 0 SHEET 2 AA7 6 ILE B 194 GLU B 202 -1 O VAL B 201 N ASP B 127 SHEET 3 AA7 6 ALA B 226 ILE B 232 -1 O GLY B 231 N THR B 195 SHEET 4 AA7 6 VAL B 149 SER B 154 1 N LEU B 151 O LEU B 230 SHEET 5 AA7 6 ASN B 157 LEU B 162 -1 O ASN B 157 N SER B 154 SHEET 6 AA7 6 CYS B 247 PHE B 249 -1 O TYR B 248 N VAL B 160 SHEET 1 AA8 2 THR B 291 GLU B 294 0 SHEET 2 AA8 2 LYS B 299 CYS B 302 -1 O LYS B 299 N GLU B 294 SHEET 1 AA9 4 LEU B 353 PHE B 356 0 SHEET 2 AA9 4 ASP B 322 ILE B 330 -1 N VAL B 325 O GLY B 355 SHEET 3 AA9 4 SER B 395 ALA B 404 1 O ILE B 398 N VAL B 324 SHEET 4 AA9 4 VAL B 379 TRP B 390 -1 N TRP B 390 O SER B 395 SHEET 1 AB1 4 LEU B 353 PHE B 356 0 SHEET 2 AB1 4 ASP B 322 ILE B 330 -1 N VAL B 325 O GLY B 355 SHEET 3 AB1 4 LYS B 336 ARG B 341 -1 O LEU B 338 N VAL B 329 SHEET 4 AB1 4 ASP B 418 THR B 423 -1 O PHE B 422 N CYS B 337 SSBOND 1 CYS A 177 CYS A 247 1555 1555 2.10 SSBOND 2 CYS B 177 CYS B 247 1555 1555 2.07 LINK SG CYS A 284 ZN ZN A 505 1555 1555 2.40 LINK SG CYS A 287 ZN ZN A 505 1555 1555 2.32 LINK SG CYS A 302 ZN ZN A 505 1555 1555 2.29 LINK SG CYS A 307 ZN ZN A 505 1555 1555 2.33 LINK O ALA A 354 MG MG A 502 1555 1555 2.00 LINK OE1 GLU A 370 MG MG A 503 1555 1555 2.06 LINK OE2 GLU A 370 MG MG A 504 1555 1555 2.01 LINK OE2 GLU A 374 MG MG A 502 1555 1555 2.16 LINK OE2 GLU A 374 MG MG A 503 1555 1555 2.13 LINK OE1 GLU A 415 MG MG A 502 1555 1555 2.15 LINK OE2 GLU A 415 MG MG A 503 1555 1555 2.32 LINK O3P AMP A 501 MG MG A 502 1555 1555 2.07 LINK O3P AMP A 501 MG MG A 503 1555 1555 2.11 LINK O2P AMP A 501 MG MG A 504 1555 1555 2.03 LINK MG MG A 502 O HOH A 622 1555 1555 2.07 LINK MG MG A 502 O HOH A 639 1555 1555 2.10 LINK MG MG A 503 O HOH A 638 1555 1555 2.12 LINK MG MG A 503 O HOH A 694 1555 1555 2.08 LINK MG MG A 504 O HOH A 644 1555 1555 2.07 LINK MG MG A 504 O HOH A 650 1555 1555 2.02 LINK MG MG A 504 O HOH A 674 1555 1555 2.04 LINK MG MG A 504 O HOH A 694 1555 1555 2.25 LINK SG CYS B 284 ZN ZN B 501 1555 1555 2.36 LINK SG CYS B 287 ZN ZN B 501 1555 1555 2.39 LINK SG CYS B 302 ZN ZN B 501 1555 1555 2.32 LINK SG CYS B 307 ZN ZN B 501 1555 1555 2.28 LINK O ALA B 354 MG MG B 503 1555 1555 2.04 LINK OE1 GLU B 370 MG MG B 504 1555 1555 2.08 LINK OE2 GLU B 370 MG MG B 505 1555 1555 2.09 LINK OE2 GLU B 374 MG MG B 503 1555 1555 2.13 LINK OE2 GLU B 374 MG MG B 504 1555 1555 1.99 LINK OE1 GLU B 415 MG MG B 503 1555 1555 2.24 LINK OE2 GLU B 415 MG MG B 504 1555 1555 2.20 LINK O2P AMP B 502 MG MG B 503 1555 1555 2.15 LINK O2P AMP B 502 MG MG B 504 1555 1555 2.09 LINK O1P AMP B 502 MG MG B 505 1555 1555 2.03 LINK MG MG B 503 O HOH B 625 1555 1555 2.14 LINK MG MG B 503 O HOH B 631 1555 1555 2.11 LINK MG MG B 504 O HOH B 609 1555 1555 2.08 LINK MG MG B 504 O HOH B 712 1555 1555 2.17 LINK MG MG B 505 O HOH B 652 1555 1555 2.11 LINK MG MG B 505 O HOH B 655 1555 1555 1.99 LINK MG MG B 505 O HOH B 690 1555 1555 2.20 LINK MG MG B 505 O HOH B 712 1555 1555 2.16 CISPEP 1 HIS A 251 PRO A 252 0 -8.09 CISPEP 2 MET A 254 PRO A 255 0 -3.32 CISPEP 3 MET A 392 PRO A 393 0 1.49 CISPEP 4 HIS B 251 PRO B 252 0 -7.31 CISPEP 5 MET B 254 PRO B 255 0 3.19 CISPEP 6 MET B 392 PRO B 393 0 3.27 SITE 1 AC1 20 ASP A 322 ALA A 354 GLY A 355 PHE A 356 SITE 2 AC1 20 GLU A 370 GLU A 374 GLU A 415 MG A 502 SITE 3 AC1 20 MG A 503 MG A 504 HOH A 632 HOH A 639 SITE 4 AC1 20 HOH A 644 HOH A 650 HOH A 669 HOH A 694 SITE 5 AC1 20 VAL B 313 ASN B 315 TYR B 318 HOH B 684 SITE 1 AC2 7 ALA A 354 GLU A 374 GLU A 415 AMP A 501 SITE 2 AC2 7 MG A 503 HOH A 622 HOH A 639 SITE 1 AC3 8 GLU A 370 GLU A 374 GLU A 415 AMP A 501 SITE 2 AC3 8 MG A 502 MG A 504 HOH A 638 HOH A 694 SITE 1 AC4 7 GLU A 370 AMP A 501 MG A 503 HOH A 644 SITE 2 AC4 7 HOH A 650 HOH A 674 HOH A 694 SITE 1 AC5 4 CYS A 284 CYS A 287 CYS A 302 CYS A 307 SITE 1 AC6 4 CYS B 284 CYS B 287 CYS B 302 CYS B 307 SITE 1 AC7 19 VAL A 313 ASN A 315 TYR A 318 ASP B 322 SITE 2 AC7 19 ALA B 354 GLY B 355 PHE B 356 GLU B 370 SITE 3 AC7 19 GLU B 374 GLU B 415 MG B 503 MG B 504 SITE 4 AC7 19 MG B 505 HOH B 631 HOH B 652 HOH B 655 SITE 5 AC7 19 HOH B 675 HOH B 712 HOH B 716 SITE 1 AC8 7 ALA B 354 GLU B 374 GLU B 415 AMP B 502 SITE 2 AC8 7 MG B 504 HOH B 625 HOH B 631 SITE 1 AC9 8 GLU B 370 GLU B 374 GLU B 415 AMP B 502 SITE 2 AC9 8 MG B 503 MG B 505 HOH B 609 HOH B 712 SITE 1 AD1 7 GLU B 370 AMP B 502 MG B 504 HOH B 652 SITE 2 AD1 7 HOH B 655 HOH B 690 HOH B 712 CRYST1 56.207 58.550 61.707 102.40 115.19 104.66 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017791 0.004653 0.010842 0.00000 SCALE2 0.000000 0.017654 0.006992 0.00000 SCALE3 0.000000 0.000000 0.019262 0.00000