HEADER HYDROLASE 27-FEB-19 6O3Y TITLE CRYSTAL STRUCTURE OF YEAST NRD1 CID IN COMPLEX WITH SEN1 NIM3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN NRD1; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HELICASE SEN1; COMPND 7 CHAIN: D, E, F; COMPND 8 SYNONYM: TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR; COMPND 9 EC: 3.6.4.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: NRD1, YNL251C, N0868; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932 KEYWDS COMPLEX, CID, CTD MIMIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,L.TONG REVDAT 4 11-OCT-23 6O3Y 1 REMARK REVDAT 3 18-DEC-19 6O3Y 1 REMARK REVDAT 2 17-JUL-19 6O3Y 1 JRNL REVDAT 1 05-JUN-19 6O3Y 0 JRNL AUTH Y.ZHANG,Y.CHUN,S.BURATOWSKI,L.TONG JRNL TITL IDENTIFICATION OF THREE SEQUENCE MOTIFS IN THE TRANSCRIPTION JRNL TITL 2 TERMINATION FACTOR SEN1 THAT MEDIATE DIRECT INTERACTIONS JRNL TITL 3 WITH NRD1. JRNL REF STRUCTURE V. 27 1156 2019 JRNL REFN ISSN 0969-2126 JRNL PMID 31104813 JRNL DOI 10.1016/J.STR.2019.04.005 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 14393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0511 - 4.7850 0.95 2780 149 0.2343 0.2897 REMARK 3 2 4.7850 - 3.7986 0.97 2727 143 0.2113 0.2552 REMARK 3 3 3.7986 - 3.3185 0.98 2737 146 0.2325 0.3095 REMARK 3 4 3.3185 - 3.0152 0.97 2687 148 0.2587 0.3345 REMARK 3 5 3.0152 - 2.7991 0.98 2733 143 0.2781 0.3477 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3611 REMARK 3 ANGLE : 1.101 4852 REMARK 3 CHIRALITY : 0.057 554 REMARK 3 PLANARITY : 0.007 612 REMARK 3 DIHEDRAL : 14.492 2216 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 32.8097 120.4551 -3.0728 REMARK 3 T TENSOR REMARK 3 T11: 0.2698 T22: 0.2251 REMARK 3 T33: 0.1762 T12: 0.4410 REMARK 3 T13: 0.0486 T23: -0.0498 REMARK 3 L TENSOR REMARK 3 L11: 0.1324 L22: 0.1685 REMARK 3 L33: 0.1760 L12: -0.1428 REMARK 3 L13: 0.0776 L23: -0.0931 REMARK 3 S TENSOR REMARK 3 S11: 0.0508 S12: 0.0741 S13: 0.1148 REMARK 3 S21: -0.1023 S22: -0.0727 S23: 0.1358 REMARK 3 S31: -0.3289 S32: -0.2987 S33: 0.0631 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000239403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14439 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.799 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3CLJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, LITHIUM CHLORIDE, PEG REMARK 280 6000, PH 4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.68250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.68250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.33550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.52300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.33550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.52300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.68250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.33550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.52300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.68250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.33550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.52300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 GLY A -3 REMARK 465 LEU A -2 REMARK 465 VAL A -1 REMARK 465 PRO A 0 REMARK 465 ARG A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 MET A 152 REMARK 465 ASP A 153 REMARK 465 ILE A 154 REMARK 465 SER A 155 REMARK 465 ASN A 156 REMARK 465 MET B -15 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 SER B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 SER B -5 REMARK 465 SER B -4 REMARK 465 GLY B -3 REMARK 465 LEU B -2 REMARK 465 VAL B -1 REMARK 465 PRO B 0 REMARK 465 ARG B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 HIS B 4 REMARK 465 SER B 82 REMARK 465 ASN B 83 REMARK 465 SER B 84 REMARK 465 ASN B 85 REMARK 465 SER B 86 REMARK 465 SER B 87 REMARK 465 SER B 88 REMARK 465 ASN B 89 REMARK 465 PHE B 150 REMARK 465 ALA B 151 REMARK 465 MET B 152 REMARK 465 ASP B 153 REMARK 465 ILE B 154 REMARK 465 SER B 155 REMARK 465 ASN B 156 REMARK 465 MET C -15 REMARK 465 GLY C -14 REMARK 465 SER C -13 REMARK 465 SER C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 HIS C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 SER C -5 REMARK 465 SER C -4 REMARK 465 GLY C -3 REMARK 465 LEU C -2 REMARK 465 VAL C -1 REMARK 465 PRO C 0 REMARK 465 ARG C 1 REMARK 465 GLY C 2 REMARK 465 SER C 3 REMARK 465 HIS C 4 REMARK 465 ALA C 151 REMARK 465 MET C 152 REMARK 465 ASP C 153 REMARK 465 ILE C 154 REMARK 465 SER C 155 REMARK 465 ASN C 156 REMARK 465 GLU D 2053 REMARK 465 ALA D 2054 REMARK 465 PRO D 2062 REMARK 465 HIS D 2063 REMARK 465 PRO D 2064 REMARK 465 GLN D 2065 REMARK 465 GLU E 2053 REMARK 465 ALA E 2054 REMARK 465 ASN E 2061 REMARK 465 PRO E 2062 REMARK 465 HIS E 2063 REMARK 465 PRO E 2064 REMARK 465 GLN E 2065 REMARK 465 GLU F 2053 REMARK 465 ALA F 2054 REMARK 465 PRO F 2062 REMARK 465 HIS F 2063 REMARK 465 PRO F 2064 REMARK 465 GLN F 2065 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 42 53.18 -115.93 REMARK 500 SER A 87 32.18 -74.24 REMARK 500 SER A 88 -16.73 -38.32 REMARK 500 ILE B 42 50.39 -114.49 REMARK 500 ILE C 42 54.06 -116.39 REMARK 500 LEU F2060 42.11 -95.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6O3W RELATED DB: PDB REMARK 900 RELATED ID: 6O3X RELATED DB: PDB DBREF 6O3Y A 6 156 UNP P53617 NRD1_YEAST 6 156 DBREF 6O3Y B 6 156 UNP P53617 NRD1_YEAST 6 156 DBREF 6O3Y C 6 156 UNP P53617 NRD1_YEAST 6 156 DBREF 6O3Y D 2053 2065 UNP Q00416 SEN1_YEAST 2181 2193 DBREF 6O3Y E 2053 2065 UNP Q00416 SEN1_YEAST 2181 2193 DBREF 6O3Y F 2053 2065 UNP Q00416 SEN1_YEAST 2181 2193 SEQADV 6O3Y MET A -15 UNP P53617 INITIATING METHIONINE SEQADV 6O3Y GLY A -14 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER A -13 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER A -12 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS A -11 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS A -10 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS A -9 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS A -8 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS A -7 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS A -6 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER A -5 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER A -4 UNP P53617 EXPRESSION TAG SEQADV 6O3Y GLY A -3 UNP P53617 EXPRESSION TAG SEQADV 6O3Y LEU A -2 UNP P53617 EXPRESSION TAG SEQADV 6O3Y VAL A -1 UNP P53617 EXPRESSION TAG SEQADV 6O3Y PRO A 0 UNP P53617 EXPRESSION TAG SEQADV 6O3Y ARG A 1 UNP P53617 EXPRESSION TAG SEQADV 6O3Y GLY A 2 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER A 3 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS A 4 UNP P53617 EXPRESSION TAG SEQADV 6O3Y MET A 5 UNP P53617 EXPRESSION TAG SEQADV 6O3Y MET B -15 UNP P53617 INITIATING METHIONINE SEQADV 6O3Y GLY B -14 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER B -13 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER B -12 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS B -11 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS B -10 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS B -9 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS B -8 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS B -7 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS B -6 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER B -5 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER B -4 UNP P53617 EXPRESSION TAG SEQADV 6O3Y GLY B -3 UNP P53617 EXPRESSION TAG SEQADV 6O3Y LEU B -2 UNP P53617 EXPRESSION TAG SEQADV 6O3Y VAL B -1 UNP P53617 EXPRESSION TAG SEQADV 6O3Y PRO B 0 UNP P53617 EXPRESSION TAG SEQADV 6O3Y ARG B 1 UNP P53617 EXPRESSION TAG SEQADV 6O3Y GLY B 2 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER B 3 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS B 4 UNP P53617 EXPRESSION TAG SEQADV 6O3Y MET B 5 UNP P53617 EXPRESSION TAG SEQADV 6O3Y MET C -15 UNP P53617 INITIATING METHIONINE SEQADV 6O3Y GLY C -14 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER C -13 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER C -12 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS C -11 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS C -10 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS C -9 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS C -8 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS C -7 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS C -6 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER C -5 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER C -4 UNP P53617 EXPRESSION TAG SEQADV 6O3Y GLY C -3 UNP P53617 EXPRESSION TAG SEQADV 6O3Y LEU C -2 UNP P53617 EXPRESSION TAG SEQADV 6O3Y VAL C -1 UNP P53617 EXPRESSION TAG SEQADV 6O3Y PRO C 0 UNP P53617 EXPRESSION TAG SEQADV 6O3Y ARG C 1 UNP P53617 EXPRESSION TAG SEQADV 6O3Y GLY C 2 UNP P53617 EXPRESSION TAG SEQADV 6O3Y SER C 3 UNP P53617 EXPRESSION TAG SEQADV 6O3Y HIS C 4 UNP P53617 EXPRESSION TAG SEQADV 6O3Y MET C 5 UNP P53617 EXPRESSION TAG SEQRES 1 A 172 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 172 LEU VAL PRO ARG GLY SER HIS MET ASP PHE GLN ASN PHE SEQRES 3 A 172 VAL ALA THR LEU GLU SER PHE LYS ASP LEU LYS SER GLY SEQRES 4 A 172 ILE SER GLY SER ARG ILE LYS LYS LEU THR THR TYR ALA SEQRES 5 A 172 LEU ASP HIS ILE ASP ILE GLU SER LYS ILE ILE SER LEU SEQRES 6 A 172 ILE ILE ASP TYR SER ARG LEU CYS PRO ASP SER HIS LYS SEQRES 7 A 172 LEU GLY SER LEU TYR ILE ILE ASP SER ILE GLY ARG ALA SEQRES 8 A 172 TYR LEU ASP GLU THR ARG SER ASN SER ASN SER SER SER SEQRES 9 A 172 ASN LYS PRO GLY THR CYS ALA HIS ALA ILE ASN THR LEU SEQRES 10 A 172 GLY GLU VAL ILE GLN GLU LEU LEU SER ASP ALA ILE ALA SEQRES 11 A 172 LYS SER ASN GLN ASP HIS LYS GLU LYS ILE ARG MET LEU SEQRES 12 A 172 LEU ASP ILE TRP ASP ARG SER GLY LEU PHE GLN LYS SER SEQRES 13 A 172 TYR LEU ASN ALA ILE ARG SER LYS CYS PHE ALA MET ASP SEQRES 14 A 172 ILE SER ASN SEQRES 1 B 172 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 172 LEU VAL PRO ARG GLY SER HIS MET ASP PHE GLN ASN PHE SEQRES 3 B 172 VAL ALA THR LEU GLU SER PHE LYS ASP LEU LYS SER GLY SEQRES 4 B 172 ILE SER GLY SER ARG ILE LYS LYS LEU THR THR TYR ALA SEQRES 5 B 172 LEU ASP HIS ILE ASP ILE GLU SER LYS ILE ILE SER LEU SEQRES 6 B 172 ILE ILE ASP TYR SER ARG LEU CYS PRO ASP SER HIS LYS SEQRES 7 B 172 LEU GLY SER LEU TYR ILE ILE ASP SER ILE GLY ARG ALA SEQRES 8 B 172 TYR LEU ASP GLU THR ARG SER ASN SER ASN SER SER SER SEQRES 9 B 172 ASN LYS PRO GLY THR CYS ALA HIS ALA ILE ASN THR LEU SEQRES 10 B 172 GLY GLU VAL ILE GLN GLU LEU LEU SER ASP ALA ILE ALA SEQRES 11 B 172 LYS SER ASN GLN ASP HIS LYS GLU LYS ILE ARG MET LEU SEQRES 12 B 172 LEU ASP ILE TRP ASP ARG SER GLY LEU PHE GLN LYS SER SEQRES 13 B 172 TYR LEU ASN ALA ILE ARG SER LYS CYS PHE ALA MET ASP SEQRES 14 B 172 ILE SER ASN SEQRES 1 C 172 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 172 LEU VAL PRO ARG GLY SER HIS MET ASP PHE GLN ASN PHE SEQRES 3 C 172 VAL ALA THR LEU GLU SER PHE LYS ASP LEU LYS SER GLY SEQRES 4 C 172 ILE SER GLY SER ARG ILE LYS LYS LEU THR THR TYR ALA SEQRES 5 C 172 LEU ASP HIS ILE ASP ILE GLU SER LYS ILE ILE SER LEU SEQRES 6 C 172 ILE ILE ASP TYR SER ARG LEU CYS PRO ASP SER HIS LYS SEQRES 7 C 172 LEU GLY SER LEU TYR ILE ILE ASP SER ILE GLY ARG ALA SEQRES 8 C 172 TYR LEU ASP GLU THR ARG SER ASN SER ASN SER SER SER SEQRES 9 C 172 ASN LYS PRO GLY THR CYS ALA HIS ALA ILE ASN THR LEU SEQRES 10 C 172 GLY GLU VAL ILE GLN GLU LEU LEU SER ASP ALA ILE ALA SEQRES 11 C 172 LYS SER ASN GLN ASP HIS LYS GLU LYS ILE ARG MET LEU SEQRES 12 C 172 LEU ASP ILE TRP ASP ARG SER GLY LEU PHE GLN LYS SER SEQRES 13 C 172 TYR LEU ASN ALA ILE ARG SER LYS CYS PHE ALA MET ASP SEQRES 14 C 172 ILE SER ASN SEQRES 1 D 13 GLU ALA GLU ASP PRO TYR ASP LEU ASN PRO HIS PRO GLN SEQRES 1 E 13 GLU ALA GLU ASP PRO TYR ASP LEU ASN PRO HIS PRO GLN SEQRES 1 F 13 GLU ALA GLU ASP PRO TYR ASP LEU ASN PRO HIS PRO GLN HET CL A 201 1 HET CL C 201 1 HETNAM CL CHLORIDE ION FORMUL 7 CL 2(CL 1-) HELIX 1 AA1 ASP A 6 SER A 16 1 11 HELIX 2 AA2 PHE A 17 LEU A 20 5 4 HELIX 3 AA3 SER A 25 HIS A 39 1 15 HELIX 4 AA4 ILE A 42 CYS A 57 1 16 HELIX 5 AA5 PRO A 58 SER A 60 5 3 HELIX 6 AA6 HIS A 61 SER A 84 1 24 HELIX 7 AA7 THR A 93 LYS A 115 1 23 HELIX 8 AA8 ASN A 117 GLY A 135 1 19 HELIX 9 AA9 GLN A 138 PHE A 150 1 13 HELIX 10 AB1 ASP B 6 PHE B 17 1 12 HELIX 11 AB2 LYS B 18 LEU B 20 5 3 HELIX 12 AB3 SER B 25 HIS B 39 1 15 HELIX 13 AB4 ILE B 42 CYS B 57 1 16 HELIX 14 AB5 PRO B 58 SER B 60 5 3 HELIX 15 AB6 HIS B 61 THR B 80 1 20 HELIX 16 AB7 THR B 93 SER B 116 1 24 HELIX 17 AB8 ASN B 117 GLY B 135 1 19 HELIX 18 AB9 GLN B 138 CYS B 149 1 12 HELIX 19 AC1 ASP C 6 SER C 16 1 11 HELIX 20 AC2 PHE C 17 LEU C 20 5 4 HELIX 21 AC3 SER C 25 HIS C 39 1 15 HELIX 22 AC4 ILE C 42 CYS C 57 1 16 HELIX 23 AC5 PRO C 58 SER C 60 5 3 HELIX 24 AC6 HIS C 61 ASN C 83 1 23 HELIX 25 AC7 THR C 93 LYS C 115 1 23 HELIX 26 AC8 ASN C 117 GLY C 135 1 19 HELIX 27 AC9 GLN C 138 CYS C 149 1 12 SITE 1 AC1 1 ASN A 83 SITE 1 AC2 2 ASN C 83 ASN C 85 CRYST1 98.671 103.046 115.365 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010135 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008668 0.00000