HEADER HYDROLASE 28-FEB-19 6O46 TITLE CRYSTAL STRUCTURE OF HUMAN KRAS P34R MUTANT IN COMPLEX WITH GNP AND TITLE 2 PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 EC: 3.-.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, SMALL GTPASE, SIGNAL TRANSDUCTION, GNP BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.K.BERA,K.D.WESTOVER REVDAT 3 11-OCT-23 6O46 1 REMARK REVDAT 2 26-AUG-20 6O46 1 TITLE JRNL LINK REVDAT 1 11-MAR-20 6O46 0 JRNL AUTH A.K.BERA,J.LU,C.LU,L.LI,S.GONDI,W.YAN,A.NELSON,G.ZHANG, JRNL AUTH 2 K.D.WESTOVER JRNL TITL GTP HYDROLYSIS IS MODULATED BY ARG34 IN THE JRNL TITL 2 RASOPATHY-ASSOCIATED KRASP34R. JRNL REF BIRTH DEFECTS RES V. 112 708 2020 JRNL REFN ISSN 2472-1727 JRNL PMID 32187889 JRNL DOI 10.1002/BDR2.1647 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14RC3_3199 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 54050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7900 - 5.0700 1.00 3007 162 0.1847 0.1944 REMARK 3 2 5.0700 - 4.0300 1.00 2898 160 0.1382 0.1728 REMARK 3 3 4.0300 - 3.5200 1.00 2818 176 0.1481 0.1870 REMARK 3 4 3.5200 - 3.2000 1.00 2838 164 0.1596 0.1891 REMARK 3 5 3.2000 - 2.9700 1.00 2857 157 0.1817 0.2143 REMARK 3 6 2.9700 - 2.7900 1.00 2868 116 0.1861 0.2546 REMARK 3 7 2.7900 - 2.6500 1.00 2823 138 0.1852 0.2411 REMARK 3 8 2.6500 - 2.5400 1.00 2816 165 0.1743 0.2162 REMARK 3 9 2.5400 - 2.4400 1.00 2839 149 0.1765 0.2201 REMARK 3 10 2.4400 - 2.3600 1.00 2798 155 0.1779 0.2248 REMARK 3 11 2.3600 - 2.2800 1.00 2793 164 0.1725 0.2034 REMARK 3 12 2.2800 - 2.2200 1.00 2801 140 0.1656 0.2167 REMARK 3 13 2.2200 - 2.1600 1.00 2813 132 0.1745 0.2334 REMARK 3 14 2.1600 - 2.1100 1.00 2843 133 0.1832 0.2270 REMARK 3 15 2.1100 - 2.0600 1.00 2753 160 0.1954 0.2249 REMARK 3 16 2.0600 - 2.0100 0.94 2670 124 0.2040 0.2212 REMARK 3 17 2.0100 - 1.9700 0.89 2472 139 0.2024 0.2728 REMARK 3 18 1.9700 - 1.9400 0.76 2080 101 0.2192 0.2797 REMARK 3 19 1.9400 - 1.9000 0.54 1541 87 0.2414 0.2996 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.164 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.862 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 4257 REMARK 3 ANGLE : 1.457 5771 REMARK 3 CHIRALITY : 0.102 644 REMARK 3 PLANARITY : 0.008 782 REMARK 3 DIHEDRAL : 20.118 2604 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -38.9331 55.7651 -3.3297 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.0376 REMARK 3 T33: 0.0974 T12: -0.0408 REMARK 3 T13: 0.0013 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.5888 L22: 1.1181 REMARK 3 L33: 1.1529 L12: 0.4455 REMARK 3 L13: 0.2923 L23: 0.5895 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: 0.1224 S13: -0.1392 REMARK 3 S21: 0.1905 S22: 0.0564 S23: -0.0934 REMARK 3 S31: 0.0965 S32: 0.0876 S33: -0.0307 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000239973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0-8.4 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56142 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4OBE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8-2.0 M SODIUM/POTASSIUM PHOSPHATE, REMARK 280 PH 8.0-8.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.46200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.46200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.46200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 465 GLY C 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 149 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 MET B 111 CG - SD - CE ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -87.20 -147.59 REMARK 500 GLU A 37 -40.19 -132.67 REMARK 500 ASP A 38 -26.14 69.82 REMARK 500 SER A 65 28.78 -155.70 REMARK 500 ARG A 68 -73.65 -55.19 REMARK 500 LYS A 117 34.21 70.89 REMARK 500 LYS A 117 33.52 70.89 REMARK 500 SER A 122 41.50 -78.68 REMARK 500 ARG A 149 -1.11 78.23 REMARK 500 LYS A 167 6.99 -67.92 REMARK 500 GLU B 63 176.89 -56.54 REMARK 500 LYS B 117 32.12 72.28 REMARK 500 LYS B 117 34.11 72.28 REMARK 500 ARG B 149 -7.23 74.22 REMARK 500 GLU C 31 28.26 -145.55 REMARK 500 LYS C 117 33.71 70.37 REMARK 500 LYS C 117 32.49 70.37 REMARK 500 ARG C 149 -2.79 79.51 REMARK 500 LYS C 167 86.09 -68.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GNP A 201 O1G 169.5 REMARK 620 3 GNP A 201 O2B 89.9 93.7 REMARK 620 4 HOH A 330 O 83.3 86.8 91.7 REMARK 620 5 HOH A 360 O 86.7 102.8 94.4 168.3 REMARK 620 6 HOH A 407 O 88.2 88.1 178.1 87.8 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GNP B 201 O1G 170.0 REMARK 620 3 GNP B 201 O2B 85.3 99.7 REMARK 620 4 HOH B 309 O 80.8 90.1 95.5 REMARK 620 5 HOH B 318 O 86.9 101.9 87.1 167.2 REMARK 620 6 HOH B 331 O 85.2 90.3 169.9 86.1 89.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 17 OG REMARK 620 2 GNP C 201 O1G 175.6 REMARK 620 3 GNP C 201 O2B 83.5 95.6 REMARK 620 4 HOH C 305 O 72.3 103.4 90.5 REMARK 620 5 HOH C 325 O 91.6 92.7 92.2 163.3 REMARK 620 6 HOH C 356 O 85.6 95.2 169.1 86.2 88.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 202 DBREF 6O46 A 1 168 UNP P01116 RASK_HUMAN 1 168 DBREF 6O46 B 1 168 UNP P01116 RASK_HUMAN 1 168 DBREF 6O46 C 1 168 UNP P01116 RASK_HUMAN 1 168 SEQADV 6O46 GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 6O46 ARG A 34 UNP P01116 PRO 34 ENGINEERED MUTATION SEQADV 6O46 GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 6O46 ARG B 34 UNP P01116 PRO 34 ENGINEERED MUTATION SEQADV 6O46 GLY C 0 UNP P01116 EXPRESSION TAG SEQADV 6O46 ARG C 34 UNP P01116 PRO 34 ENGINEERED MUTATION SEQRES 1 A 169 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 169 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 169 ASN HIS PHE VAL ASP GLU TYR ASP ARG THR ILE GLU ASP SEQRES 4 A 169 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 169 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 169 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 169 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 169 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 169 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 169 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 169 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 169 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 169 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 1 B 169 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 B 169 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 B 169 ASN HIS PHE VAL ASP GLU TYR ASP ARG THR ILE GLU ASP SEQRES 4 B 169 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 B 169 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 B 169 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 B 169 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 B 169 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 B 169 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 B 169 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 B 169 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 B 169 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 B 169 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 1 C 169 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 C 169 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 C 169 ASN HIS PHE VAL ASP GLU TYR ASP ARG THR ILE GLU ASP SEQRES 4 C 169 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 C 169 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 C 169 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 C 169 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 C 169 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 C 169 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 C 169 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 C 169 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 C 169 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 C 169 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU HET GNP A 201 32 HET MG A 202 1 HET PO4 A 203 5 HET GNP B 201 32 HET MG B 202 1 HET GNP C 201 32 HET MG C 202 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 4 GNP 3(C10 H17 N6 O13 P3) FORMUL 5 MG 3(MG 2+) FORMUL 6 PO4 O4 P 3- FORMUL 11 HOH *386(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 MET A 67 GLY A 75 1 9 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 LYS A 167 1 17 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 TYR B 64 GLY B 75 1 12 HELIX 9 AA9 ASN B 86 ASP B 92 1 7 HELIX 10 AB1 ASP B 92 ASP B 105 1 14 HELIX 11 AB2 ASP B 126 GLY B 138 1 13 HELIX 12 AB3 GLY B 151 LYS B 167 1 17 HELIX 13 AB4 GLY C 15 ASN C 26 1 12 HELIX 14 AB5 MET C 67 GLY C 75 1 9 HELIX 15 AB6 ASN C 86 ASP C 92 1 7 HELIX 16 AB7 ASP C 92 ASP C 105 1 14 HELIX 17 AB8 ASP C 126 GLY C 138 1 13 HELIX 18 AB9 GLY C 151 LYS C 167 1 17 SHEET 1 AA1 6 SER A 39 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 SER B 39 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O ILE B 55 N TYR B 40 SHEET 3 AA2 6 GLU B 3 GLY B 10 1 N TYR B 4 O ASP B 54 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 SHEET 1 AA3 6 SER C 39 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 ASP C 57 -1 O ILE C 55 N TYR C 40 SHEET 3 AA3 6 THR C 2 GLY C 10 1 N LEU C 6 O ASP C 54 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O VAL C 81 N VAL C 9 SHEET 5 AA3 6 MET C 111 ASN C 116 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 PHE C 141 GLU C 143 1 O ILE C 142 N LEU C 113 LINK OG SER A 17 MG MG A 202 1555 1555 2.29 LINK O1G GNP A 201 MG MG A 202 1555 1555 2.15 LINK O2B GNP A 201 MG MG A 202 1555 1555 1.99 LINK MG MG A 202 O HOH A 330 1555 1555 2.01 LINK MG MG A 202 O HOH A 360 1555 1555 2.02 LINK MG MG A 202 O HOH A 407 1555 1555 2.12 LINK OG SER B 17 MG MG B 202 1555 1555 2.15 LINK O1G GNP B 201 MG MG B 202 1555 1555 2.11 LINK O2B GNP B 201 MG MG B 202 1555 1555 1.99 LINK MG MG B 202 O HOH B 309 1555 1555 2.04 LINK MG MG B 202 O HOH B 318 1555 1555 2.14 LINK MG MG B 202 O HOH B 331 1555 1555 2.19 LINK OG SER C 17 MG MG C 202 1555 1555 2.12 LINK O1G GNP C 201 MG MG C 202 1555 1555 1.93 LINK O2B GNP C 201 MG MG C 202 1555 1555 2.07 LINK MG MG C 202 O HOH C 305 1555 1555 1.91 LINK MG MG C 202 O HOH C 325 1555 1555 2.11 LINK MG MG C 202 O HOH C 356 1555 1555 2.15 SITE 1 AC1 31 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 31 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 31 VAL A 29 ASP A 30 GLY A 60 GLN A 61 SITE 4 AC1 31 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 5 AC1 31 LYS A 128 SER A 145 ALA A 146 LYS A 147 SITE 6 AC1 31 MG A 202 PO4 A 203 HOH A 301 HOH A 311 SITE 7 AC1 31 HOH A 330 HOH A 356 HOH A 360 HOH A 385 SITE 8 AC1 31 HOH A 407 HOH A 411 HOH A 412 SITE 1 AC2 5 SER A 17 GNP A 201 HOH A 330 HOH A 360 SITE 2 AC2 5 HOH A 407 SITE 1 AC3 5 LYS A 128 GNP A 201 HOH A 302 HOH A 360 SITE 2 AC3 5 HOH A 419 SITE 1 AC4 25 GLY B 12 GLY B 13 VAL B 14 GLY B 15 SITE 2 AC4 25 LYS B 16 SER B 17 ALA B 18 PHE B 28 SITE 3 AC4 25 ARG B 34 GLY B 60 ASN B 116 LYS B 117 SITE 4 AC4 25 ASP B 119 LEU B 120 SER B 145 ALA B 146 SITE 5 AC4 25 LYS B 147 MG B 202 HOH B 303 HOH B 309 SITE 6 AC4 25 HOH B 317 HOH B 318 HOH B 331 HOH B 360 SITE 7 AC4 25 HOH B 369 SITE 1 AC5 5 SER B 17 GNP B 201 HOH B 309 HOH B 318 SITE 2 AC5 5 HOH B 331 SITE 1 AC6 26 GLY C 12 GLY C 13 VAL C 14 GLY C 15 SITE 2 AC6 26 LYS C 16 SER C 17 ALA C 18 PHE C 28 SITE 3 AC6 26 GLU C 31 ARG C 34 GLY C 60 ASN C 116 SITE 4 AC6 26 LYS C 117 ASP C 119 LEU C 120 SER C 145 SITE 5 AC6 26 ALA C 146 LYS C 147 MG C 202 HOH C 303 SITE 6 AC6 26 HOH C 305 HOH C 307 HOH C 325 HOH C 327 SITE 7 AC6 26 HOH C 356 HOH C 358 SITE 1 AC7 5 SER C 17 GNP C 201 HOH C 305 HOH C 325 SITE 2 AC7 5 HOH C 356 CRYST1 188.377 188.377 34.924 90.00 90.00 120.00 P 63 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005309 0.003065 0.000000 0.00000 SCALE2 0.000000 0.006130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028634 0.00000