data_6O4J # _entry.id 6O4J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6O4J pdb_00006o4j 10.2210/pdb6o4j/pdb WWPDB D_1000239957 ? ? EMDB EMD-0619 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Amyloid Beta KLVFFAENVGS 16-26 D23N Iowa mutation' _pdbx_database_related.db_id EMD-0619 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6O4J _pdbx_database_status.recvd_initial_deposition_date 2019-02-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Griner, S.L.' 1 0000-0002-4500-2419 'Sawaya, M.R.' 2 0000-0003-0874-9043 'Rodriguez, J.A.' 3 0000-0001-8471-2504 'Cascio, D.' 4 0000-0002-3877-6803 'Gonen, T.' 5 0000-0002-9254-4069 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Elife _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2050-084X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure based inhibitors of Amyloid Beta core suggest a common interface with Tau.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.7554/eLife.46924 _citation.pdbx_database_id_PubMed 31612856 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Griner, S.L.' 1 ? primary 'Seidler, P.' 2 ? primary 'Bowler, J.' 3 ? primary 'Murray, K.A.' 4 ? primary 'Yang, T.P.' 5 0000-0002-4479-5154 primary 'Sahay, S.' 6 ? primary 'Sawaya, M.R.' 7 ? primary 'Cascio, D.' 8 ? primary 'Rodriguez, J.A.' 9 ? primary 'Philipp, S.' 10 ? primary 'Sosna, J.' 11 ? primary 'Glabe, C.G.' 12 ? primary 'Gonen, T.' 13 0000-0002-9254-4069 primary 'Eisenberg, D.S.' 14 0000-0003-2432-5419 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 114.180 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6O4J _cell.details ? _cell.formula_units_Z ? _cell.length_a 11.670 _cell.length_a_esd ? _cell.length_b 51.910 _cell.length_b_esd ? _cell.length_c 12.760 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Amyloid-beta precursor protein' _entity.formula_weight 1235.432 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation D23N _entity.pdbx_fragment 'UNP residues 687-697' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;APP, ABPP, APPI, Alzheimer disease amyloid protein, Amyloid precursor protein, Amyloid-beta A4 protein, Cerebral vascular amyloid peptide, CVAP, PreA4, Protease nexin-II, PN-II ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)KLVFFAENVGS(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XKLVFFAENVGSX _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 LYS n 1 3 LEU n 1 4 VAL n 1 5 PHE n 1 6 PHE n 1 7 ALA n 1 8 GLU n 1 9 ASN n 1 10 VAL n 1 11 GLY n 1 12 SER n 1 13 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 13 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KLVFFAEDVGS _struct_ref.pdbx_align_begin 687 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6O4J A 2 ? 12 ? P05067 687 ? 697 ? 16 26 2 1 6O4J B 2 ? 12 ? P05067 687 ? 697 ? 16 26 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6O4J ACE A 1 ? UNP P05067 ? ? acetylation 15 1 1 6O4J ASN A 9 ? UNP P05067 ASP 694 'engineered mutation' 23 2 1 6O4J NH2 A 13 ? UNP P05067 ? ? amidation 27 3 2 6O4J ACE B 1 ? UNP P05067 ? ? acetylation 15 4 2 6O4J ASN B 9 ? UNP P05067 ASP 694 'engineered mutation' 23 5 2 6O4J NH2 B 13 ? UNP P05067 ? ? amidation 27 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6O4J _exptl.crystals_number 1 _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.43 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method UNSPECIFIED _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? # _diffrn.ambient_environment ? _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.area_resol_mean ? _diffrn_detector.details ? _diffrn_detector.detector ? _diffrn_detector.diffrn_id 1 _diffrn_detector.dtime ? _diffrn_detector.pdbx_collection_date 2014-11-07 _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_frequency ? _diffrn_detector.type ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type electron # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ELECTRON MICROSCOPE' _diffrn_source.take-off_angle ? _diffrn_source.target ? _diffrn_source.type ? _diffrn_source.voltage ? # _reflns.B_iso_Wilson_estimate 7.230 _reflns.entry_id 6O4J _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.400 _reflns.d_resolution_low 11.640 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2355 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 85.400 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20.211 _reflns.pdbx_Rmerge_I_obs 0.240 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.060 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.886 _reflns.pdbx_scaling_rejects 15 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.246 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 47598 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.400 1.440 ? 2.880 ? 1966 209 ? 163 78.000 ? ? ? ? 0.652 ? ? ? ? ? ? ? ? 12.061 ? ? ? ? 0.682 ? ? 1 1 0.697 ? 1.440 1.480 ? 4.040 ? 2641 203 ? 169 83.300 ? ? ? ? 0.576 ? ? ? ? ? ? ? ? 15.627 ? ? ? ? 0.596 ? ? 2 1 0.671 ? 1.480 1.520 ? 4.870 ? 2499 169 ? 153 90.500 ? ? ? ? 0.489 ? ? ? ? ? ? ? ? 16.333 ? ? ? ? 0.503 ? ? 3 1 0.788 ? 1.520 1.570 ? 6.450 ? 3239 189 ? 164 86.800 ? ? ? ? 0.396 ? ? ? ? ? ? ? ? 19.750 ? ? ? ? 0.406 ? ? 4 1 0.923 ? 1.570 1.620 ? 6.490 ? 3893 194 ? 169 87.100 ? ? ? ? 0.471 ? ? ? ? ? ? ? ? 23.036 ? ? ? ? 0.481 ? ? 5 1 0.930 ? 1.620 1.680 ? 6.810 ? 3633 189 ? 154 81.500 ? ? ? ? 0.468 ? ? ? ? ? ? ? ? 23.591 ? ? ? ? 0.479 ? ? 6 1 0.882 ? 1.680 1.740 ? 6.840 ? 2443 144 ? 127 88.200 ? ? ? ? 0.394 ? ? ? ? ? ? ? ? 19.236 ? ? ? ? 0.404 ? ? 7 1 0.899 ? 1.740 1.810 ? 8.410 ? 3453 159 ? 143 89.900 ? ? ? ? 0.373 ? ? ? ? ? ? ? ? 24.147 ? ? ? ? 0.380 ? ? 8 1 0.956 ? 1.810 1.890 ? 8.900 ? 3144 170 ? 144 84.700 ? ? ? ? 0.325 ? ? ? ? ? ? ? ? 21.833 ? ? ? ? 0.332 ? ? 9 1 0.984 ? 1.890 1.980 ? 11.660 ? 2661 150 ? 125 83.300 ? ? ? ? 0.262 ? ? ? ? ? ? ? ? 21.288 ? ? ? ? 0.269 ? ? 10 1 0.987 ? 1.980 2.090 ? 11.430 ? 2581 135 ? 120 88.900 ? ? ? ? 0.277 ? ? ? ? ? ? ? ? 21.508 ? ? ? ? 0.284 ? ? 11 1 0.987 ? 2.090 2.220 ? 12.830 ? 2640 138 ? 120 87.000 ? ? ? ? 0.257 ? ? ? ? ? ? ? ? 22.000 ? ? ? ? 0.262 ? ? 12 1 0.977 ? 2.220 2.370 ? 11.670 ? 2309 129 ? 110 85.300 ? ? ? ? 0.269 ? ? ? ? ? ? ? ? 20.991 ? ? ? ? 0.276 ? ? 13 1 0.961 ? 2.370 2.560 ? 13.440 ? 2353 121 ? 104 86.000 ? ? ? ? 0.217 ? ? ? ? ? ? ? ? 22.625 ? ? ? ? 0.221 ? ? 14 1 0.993 ? 2.560 2.800 ? 12.620 ? 1772 102 ? 87 85.300 ? ? ? ? 0.217 ? ? ? ? ? ? ? ? 20.368 ? ? ? ? 0.223 ? ? 15 1 0.986 ? 2.800 3.130 ? 14.750 ? 1945 105 ? 86 81.900 ? ? ? ? 0.217 ? ? ? ? ? ? ? ? 22.616 ? ? ? ? 0.221 ? ? 16 1 0.983 ? 3.130 3.620 ? 15.480 ? 1451 75 ? 70 93.300 ? ? ? ? 0.179 ? ? ? ? ? ? ? ? 20.729 ? ? ? ? 0.183 ? ? 17 1 0.994 ? 3.620 4.430 ? 17.460 ? 1638 90 ? 73 81.100 ? ? ? ? 0.157 ? ? ? ? ? ? ? ? 22.438 ? ? ? ? 0.160 ? ? 18 1 0.995 ? 4.430 6.270 ? 16.610 ? 1004 57 ? 49 86.000 ? ? ? ? 0.163 ? ? ? ? ? ? ? ? 20.490 ? ? ? ? 0.167 ? ? 19 1 0.998 ? 6.270 11.640 ? 11.440 ? 333 29 ? 25 86.200 ? ? ? ? 0.298 ? ? ? ? ? ? ? ? 13.320 ? ? ? ? 0.308 ? ? 20 1 0.987 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 23.080 _refine.B_iso_mean 9.4646 _refine.B_iso_min 1.470 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6O4J _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.4020 _refine.ls_d_res_low 11.6400 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2354 _refine.ls_number_reflns_R_free 236 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 86.1600 _refine.ls_percent_reflns_R_free 10.0300 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2419 _refine.ls_R_factor_R_free 0.2832 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2368 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.520 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 2Y2A' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.5100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.d_res_high 1.4020 _refine_hist.d_res_low 11.6400 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 178 _refine_hist.pdbx_number_residues_total 26 _refine_hist.pdbx_number_atoms_protein 178 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.014 ? 180 ? f_bond_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.458 ? 240 ? f_angle_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.067 ? 26 ? f_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.006 ? 32 ? f_plane_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 15.776 ? 60 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_weight 1 'ELECTRON CRYSTALLOGRAPHY' 1 1 TORSIONAL A 80 24.960 ? ? ? ? ? ? ? 2 'ELECTRON CRYSTALLOGRAPHY' 1 2 TORSIONAL B 80 24.960 ? ? ? ? ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 1.4017 1.7650 1153 . 115 1038 86.0000 . . . 0.3334 0.0000 0.2802 . . . . . . 2 . . . 'ELECTRON CRYSTALLOGRAPHY' 1.7650 11.6409 1201 . 121 1080 87.0000 . . . 0.2623 0.0000 0.2187 . . . . . . 2 . . . # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 'chain A' 1 2 'chain B' # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A ACE 1 . A NH2 13 . A ACE 15 A NH2 27 ? 'chain A' 1 2 1 B ACE 1 . B NH2 13 . B ACE 15 B NH2 27 ? 'chain B' # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 6O4J _struct.title 'Amyloid Beta KLVFFAENVGS 16-26 D23N Iowa mutation' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6O4J _struct_keywords.text 'amyloid, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A LYS 2 N ? ? A ACE 15 A LYS 16 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale2 covale both ? A SER 12 C ? ? ? 1_555 A NH2 13 N ? ? A SER 26 A NH2 27 1_555 ? ? ? ? ? ? ? 1.234 ? ? covale3 covale both ? B ACE 1 C ? ? ? 1_555 B LYS 2 N ? ? B ACE 15 B LYS 16 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? B SER 12 C ? ? ? 1_555 B NH2 13 N ? ? B SER 26 B NH2 27 1_555 ? ? ? ? ? ? ? 1.236 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 3 ? ALA A 7 ? LEU A 17 ALA A 21 AA1 2 LYS B 2 ? PHE B 6 ? LYS B 16 PHE B 20 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ALA _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 7 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ALA _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 21 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LYS _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 2 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 16 # _atom_sites.entry_id 6O4J _atom_sites.fract_transf_matrix[1][1] 0.085690 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.038475 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019264 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.085907 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 15 15 ACE ACE A . n A 1 2 LYS 2 16 16 LYS LYS A . n A 1 3 LEU 3 17 17 LEU LEU A . n A 1 4 VAL 4 18 18 VAL VAL A . n A 1 5 PHE 5 19 19 PHE PHE A . n A 1 6 PHE 6 20 20 PHE PHE A . n A 1 7 ALA 7 21 21 ALA ALA A . n A 1 8 GLU 8 22 22 GLU GLU A . n A 1 9 ASN 9 23 23 ASN ASN A . n A 1 10 VAL 10 24 24 VAL VAL A . n A 1 11 GLY 11 25 25 GLY GLY A . n A 1 12 SER 12 26 26 SER SER A . n A 1 13 NH2 13 27 27 NH2 NH2 A . n B 1 1 ACE 1 15 15 ACE ACE B . n B 1 2 LYS 2 16 16 LYS LYS B . n B 1 3 LEU 3 17 17 LEU LEU B . n B 1 4 VAL 4 18 18 VAL VAL B . n B 1 5 PHE 5 19 19 PHE PHE B . n B 1 6 PHE 6 20 20 PHE PHE B . n B 1 7 ALA 7 21 21 ALA ALA B . n B 1 8 GLU 8 22 22 GLU GLU B . n B 1 9 ASN 9 23 23 ASN ASN B . n B 1 10 VAL 10 24 24 VAL VAL B . n B 1 11 GLY 11 25 25 GLY GLY B . n B 1 12 SER 12 26 26 SER SER B . n B 1 13 NH2 13 27 27 NH2 NH2 B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 1 2 A,B 1 3 A,B 1 4 A,B 1 5 A,B 1 6 A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_455 x-1,y,z 1.0000000000 0.0000000000 0.0000000000 -11.6700000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 11.6700000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_556 x,y,z+1 1.0000000000 0.0000000000 0.0000000000 -5.2265549370 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 11.6404778033 5 'crystal symmetry operation' 1_456 x-1,y,z+1 1.0000000000 0.0000000000 0.0000000000 -16.8965549370 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 11.6404778033 6 'crystal symmetry operation' 1_656 x+1,y,z+1 1.0000000000 0.0000000000 0.0000000000 6.4434450630 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 11.6404778033 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-10-30 2 'Structure model' 1 1 2019-12-18 3 'Structure model' 1 2 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' em_3d_fitting_list 6 3 'Structure model' pdbx_initial_refinement_model 7 3 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_em_3d_fitting_list.accession_code' 5 3 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 6 3 'Structure model' '_em_3d_fitting_list.source_name' 7 3 'Structure model' '_em_3d_fitting_list.type' 8 3 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 9 3 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 10 3 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 11 3 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 12 3 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 13 3 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 14 3 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 15 3 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2 ? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++ http://www.phenix-online.org/ ? PHENIX ? ? package . 3 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _em_3d_fitting.entry_id 6O4J _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria 'Maximum likelihood' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 2Y2A _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 2Y2A # _em_3d_reconstruction.entry_id 6O4J _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution 1.402 _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Fibrils of Amyloid Beta segment 16-26' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6O4J _em_image_scans.id 1 _em_image_scans.dimension_height 2048 _em_image_scans.dimension_width 2048 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6O4J _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.citation_id ? _em_sample_support.details unspecified _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.id 1 _em_sample_support.method ? _em_sample_support.specimen_id 1 # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6O4J _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6O4J _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ASN N N N N 21 ASN CA C N S 22 ASN C C N N 23 ASN O O N N 24 ASN CB C N N 25 ASN CG C N N 26 ASN OD1 O N N 27 ASN ND2 N N N 28 ASN OXT O N N 29 ASN H H N N 30 ASN H2 H N N 31 ASN HA H N N 32 ASN HB2 H N N 33 ASN HB3 H N N 34 ASN HD21 H N N 35 ASN HD22 H N N 36 ASN HXT H N N 37 ASP N N N N 38 ASP CA C N S 39 ASP C C N N 40 ASP O O N N 41 ASP CB C N N 42 ASP CG C N N 43 ASP OD1 O N N 44 ASP OD2 O N N 45 ASP OXT O N N 46 ASP H H N N 47 ASP H2 H N N 48 ASP HA H N N 49 ASP HB2 H N N 50 ASP HB3 H N N 51 ASP HD2 H N N 52 ASP HXT H N N 53 GLU N N N N 54 GLU CA C N S 55 GLU C C N N 56 GLU O O N N 57 GLU CB C N N 58 GLU CG C N N 59 GLU CD C N N 60 GLU OE1 O N N 61 GLU OE2 O N N 62 GLU OXT O N N 63 GLU H H N N 64 GLU H2 H N N 65 GLU HA H N N 66 GLU HB2 H N N 67 GLU HB3 H N N 68 GLU HG2 H N N 69 GLU HG3 H N N 70 GLU HE2 H N N 71 GLU HXT H N N 72 GLY N N N N 73 GLY CA C N N 74 GLY C C N N 75 GLY O O N N 76 GLY OXT O N N 77 GLY H H N N 78 GLY H2 H N N 79 GLY HA2 H N N 80 GLY HA3 H N N 81 GLY HXT H N N 82 LEU N N N N 83 LEU CA C N S 84 LEU C C N N 85 LEU O O N N 86 LEU CB C N N 87 LEU CG C N N 88 LEU CD1 C N N 89 LEU CD2 C N N 90 LEU OXT O N N 91 LEU H H N N 92 LEU H2 H N N 93 LEU HA H N N 94 LEU HB2 H N N 95 LEU HB3 H N N 96 LEU HG H N N 97 LEU HD11 H N N 98 LEU HD12 H N N 99 LEU HD13 H N N 100 LEU HD21 H N N 101 LEU HD22 H N N 102 LEU HD23 H N N 103 LEU HXT H N N 104 LYS N N N N 105 LYS CA C N S 106 LYS C C N N 107 LYS O O N N 108 LYS CB C N N 109 LYS CG C N N 110 LYS CD C N N 111 LYS CE C N N 112 LYS NZ N N N 113 LYS OXT O N N 114 LYS H H N N 115 LYS H2 H N N 116 LYS HA H N N 117 LYS HB2 H N N 118 LYS HB3 H N N 119 LYS HG2 H N N 120 LYS HG3 H N N 121 LYS HD2 H N N 122 LYS HD3 H N N 123 LYS HE2 H N N 124 LYS HE3 H N N 125 LYS HZ1 H N N 126 LYS HZ2 H N N 127 LYS HZ3 H N N 128 LYS HXT H N N 129 NH2 N N N N 130 NH2 HN1 H N N 131 NH2 HN2 H N N 132 PHE N N N N 133 PHE CA C N S 134 PHE C C N N 135 PHE O O N N 136 PHE CB C N N 137 PHE CG C Y N 138 PHE CD1 C Y N 139 PHE CD2 C Y N 140 PHE CE1 C Y N 141 PHE CE2 C Y N 142 PHE CZ C Y N 143 PHE OXT O N N 144 PHE H H N N 145 PHE H2 H N N 146 PHE HA H N N 147 PHE HB2 H N N 148 PHE HB3 H N N 149 PHE HD1 H N N 150 PHE HD2 H N N 151 PHE HE1 H N N 152 PHE HE2 H N N 153 PHE HZ H N N 154 PHE HXT H N N 155 SER N N N N 156 SER CA C N S 157 SER C C N N 158 SER O O N N 159 SER CB C N N 160 SER OG O N N 161 SER OXT O N N 162 SER H H N N 163 SER H2 H N N 164 SER HA H N N 165 SER HB2 H N N 166 SER HB3 H N N 167 SER HG H N N 168 SER HXT H N N 169 VAL N N N N 170 VAL CA C N S 171 VAL C C N N 172 VAL O O N N 173 VAL CB C N N 174 VAL CG1 C N N 175 VAL CG2 C N N 176 VAL OXT O N N 177 VAL H H N N 178 VAL H2 H N N 179 VAL HA H N N 180 VAL HB H N N 181 VAL HG11 H N N 182 VAL HG12 H N N 183 VAL HG13 H N N 184 VAL HG21 H N N 185 VAL HG22 H N N 186 VAL HG23 H N N 187 VAL HXT H N N 188 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ASN N CA sing N N 19 ASN N H sing N N 20 ASN N H2 sing N N 21 ASN CA C sing N N 22 ASN CA CB sing N N 23 ASN CA HA sing N N 24 ASN C O doub N N 25 ASN C OXT sing N N 26 ASN CB CG sing N N 27 ASN CB HB2 sing N N 28 ASN CB HB3 sing N N 29 ASN CG OD1 doub N N 30 ASN CG ND2 sing N N 31 ASN ND2 HD21 sing N N 32 ASN ND2 HD22 sing N N 33 ASN OXT HXT sing N N 34 ASP N CA sing N N 35 ASP N H sing N N 36 ASP N H2 sing N N 37 ASP CA C sing N N 38 ASP CA CB sing N N 39 ASP CA HA sing N N 40 ASP C O doub N N 41 ASP C OXT sing N N 42 ASP CB CG sing N N 43 ASP CB HB2 sing N N 44 ASP CB HB3 sing N N 45 ASP CG OD1 doub N N 46 ASP CG OD2 sing N N 47 ASP OD2 HD2 sing N N 48 ASP OXT HXT sing N N 49 GLU N CA sing N N 50 GLU N H sing N N 51 GLU N H2 sing N N 52 GLU CA C sing N N 53 GLU CA CB sing N N 54 GLU CA HA sing N N 55 GLU C O doub N N 56 GLU C OXT sing N N 57 GLU CB CG sing N N 58 GLU CB HB2 sing N N 59 GLU CB HB3 sing N N 60 GLU CG CD sing N N 61 GLU CG HG2 sing N N 62 GLU CG HG3 sing N N 63 GLU CD OE1 doub N N 64 GLU CD OE2 sing N N 65 GLU OE2 HE2 sing N N 66 GLU OXT HXT sing N N 67 GLY N CA sing N N 68 GLY N H sing N N 69 GLY N H2 sing N N 70 GLY CA C sing N N 71 GLY CA HA2 sing N N 72 GLY CA HA3 sing N N 73 GLY C O doub N N 74 GLY C OXT sing N N 75 GLY OXT HXT sing N N 76 LEU N CA sing N N 77 LEU N H sing N N 78 LEU N H2 sing N N 79 LEU CA C sing N N 80 LEU CA CB sing N N 81 LEU CA HA sing N N 82 LEU C O doub N N 83 LEU C OXT sing N N 84 LEU CB CG sing N N 85 LEU CB HB2 sing N N 86 LEU CB HB3 sing N N 87 LEU CG CD1 sing N N 88 LEU CG CD2 sing N N 89 LEU CG HG sing N N 90 LEU CD1 HD11 sing N N 91 LEU CD1 HD12 sing N N 92 LEU CD1 HD13 sing N N 93 LEU CD2 HD21 sing N N 94 LEU CD2 HD22 sing N N 95 LEU CD2 HD23 sing N N 96 LEU OXT HXT sing N N 97 LYS N CA sing N N 98 LYS N H sing N N 99 LYS N H2 sing N N 100 LYS CA C sing N N 101 LYS CA CB sing N N 102 LYS CA HA sing N N 103 LYS C O doub N N 104 LYS C OXT sing N N 105 LYS CB CG sing N N 106 LYS CB HB2 sing N N 107 LYS CB HB3 sing N N 108 LYS CG CD sing N N 109 LYS CG HG2 sing N N 110 LYS CG HG3 sing N N 111 LYS CD CE sing N N 112 LYS CD HD2 sing N N 113 LYS CD HD3 sing N N 114 LYS CE NZ sing N N 115 LYS CE HE2 sing N N 116 LYS CE HE3 sing N N 117 LYS NZ HZ1 sing N N 118 LYS NZ HZ2 sing N N 119 LYS NZ HZ3 sing N N 120 LYS OXT HXT sing N N 121 NH2 N HN1 sing N N 122 NH2 N HN2 sing N N 123 PHE N CA sing N N 124 PHE N H sing N N 125 PHE N H2 sing N N 126 PHE CA C sing N N 127 PHE CA CB sing N N 128 PHE CA HA sing N N 129 PHE C O doub N N 130 PHE C OXT sing N N 131 PHE CB CG sing N N 132 PHE CB HB2 sing N N 133 PHE CB HB3 sing N N 134 PHE CG CD1 doub Y N 135 PHE CG CD2 sing Y N 136 PHE CD1 CE1 sing Y N 137 PHE CD1 HD1 sing N N 138 PHE CD2 CE2 doub Y N 139 PHE CD2 HD2 sing N N 140 PHE CE1 CZ doub Y N 141 PHE CE1 HE1 sing N N 142 PHE CE2 CZ sing Y N 143 PHE CE2 HE2 sing N N 144 PHE CZ HZ sing N N 145 PHE OXT HXT sing N N 146 SER N CA sing N N 147 SER N H sing N N 148 SER N H2 sing N N 149 SER CA C sing N N 150 SER CA CB sing N N 151 SER CA HA sing N N 152 SER C O doub N N 153 SER C OXT sing N N 154 SER CB OG sing N N 155 SER CB HB2 sing N N 156 SER CB HB3 sing N N 157 SER OG HG sing N N 158 SER OXT HXT sing N N 159 VAL N CA sing N N 160 VAL N H sing N N 161 VAL N H2 sing N N 162 VAL CA C sing N N 163 VAL CA CB sing N N 164 VAL CA HA sing N N 165 VAL C O doub N N 166 VAL C OXT sing N N 167 VAL CB CG1 sing N N 168 VAL CB CG2 sing N N 169 VAL CB HB sing N N 170 VAL CG1 HG11 sing N N 171 VAL CG1 HG12 sing N N 172 VAL CG1 HG13 sing N N 173 VAL CG2 HG21 sing N N 174 VAL CG2 HG22 sing N N 175 VAL CG2 HG23 sing N N 176 VAL OXT HXT sing N N 177 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 114.18 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.length_a 11.67 _em_3d_crystal_entity.length_b 51.91 _em_3d_crystal_entity.length_c 12.76 _em_3d_crystal_entity.space_group_name p21 _em_3d_crystal_entity.space_group_num 4 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 200 mM MgCl2 'magnesium formate' 1 2 10 % C2H6OS DMSO 1 3 100 mM C4H11NO3 'Tris Base' 1 4 15 % C3H8O isopropanol # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere air _em_crystal_formation.details ? _em_crystal_formation.instrument 'microcentrifuge tube' _em_crystal_formation.lipid_mixture ? _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature 310 _em_crystal_formation.time 4 _em_crystal_formation.time_unit DAY # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 1840 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 78.0 _em_diffraction_shell.high_resolution 1.40 _em_diffraction_shell.low_resolution 1.44 _em_diffraction_shell.multiplicity 12.1 _em_diffraction_shell.num_structure_factors 163 _em_diffraction_shell.phase_residual 0.01 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 85.4 _em_diffraction_stats.high_resolution 1.40 _em_diffraction_stats.num_intensities_measured 47598 _em_diffraction_stats.num_structure_factors 2355 _em_diffraction_stats.overall_phase_error 0 _em_diffraction_stats.overall_phase_residual 0.01 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 0.240 _em_diffraction_stats.r_sym 0.240 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.03 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.num_diffraction_images 1331 _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? Coot ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 7.5 _em_specimen.details nanocrystals _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'R01 AG029430' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2Y2A _pdbx_initial_refinement_model.details 'PDB entry 2Y2A' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #