HEADER HYDROLASE, VIRAL PROTEIN 01-MAR-19 6O5A TITLE CRYSTAL STRUCTURE OF MULTI-DRUG RESISTANT HIV-1 PROTEASE PR-S17 WITH A TITLE 2 SUBSTRATE ANALOG P2-NC IN P61 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HIV PROTEASE, HYDROLASE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.-F.WANG,J.AGNISWAMY,I.T.WEBER REVDAT 4 11-OCT-23 6O5A 1 REMARK REVDAT 3 18-DEC-19 6O5A 1 REMARK REVDAT 2 17-JUL-19 6O5A 1 REMARK REVDAT 1 19-JUN-19 6O5A 0 JRNL AUTH J.AGNISWAMY,D.W.KNELLER,R.BROTHERS,Y.F.WANG,R.W.HARRISON, JRNL AUTH 2 I.T.WEBER JRNL TITL HIGHLY DRUG-RESISTANT HIV-1 PROTEASE MUTANT PRS17 SHOWS JRNL TITL 2 ENHANCED BINDING TO SUBSTRATE ANALOGUES. JRNL REF ACS OMEGA V. 4 8707 2019 JRNL REFN ESSN 2470-1343 JRNL PMID 31172041 JRNL DOI 10.1021/ACSOMEGA.9B00683 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 20830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1076 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1349 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1522 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.245 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1722 ; 0.019 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 1706 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2362 ; 2.238 ; 1.703 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3997 ; 1.124 ; 1.692 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.638 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;38.600 ;22.603 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 299 ;15.622 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.970 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 245 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1920 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 306 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 838 ; 2.099 ; 2.334 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 837 ; 2.099 ; 2.335 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1053 ; 2.901 ; 3.490 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1054 ; 2.900 ; 3.490 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 884 ; 3.314 ; 2.805 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 884 ; 3.313 ; 2.805 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1299 ; 5.200 ; 4.051 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1671 ; 6.082 ;27.451 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1659 ; 6.064 ;27.308 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9864 6.6067 -5.7488 REMARK 3 T TENSOR REMARK 3 T11: 0.0682 T22: 0.0149 REMARK 3 T33: 0.0703 T12: -0.0124 REMARK 3 T13: -0.0093 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.0541 L22: 0.8426 REMARK 3 L33: 0.6641 L12: 0.1452 REMARK 3 L13: 0.0332 L23: -0.3954 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: 0.0227 S13: 0.0183 REMARK 3 S21: -0.0901 S22: 0.0789 S23: 0.0296 REMARK 3 S31: 0.0712 S32: -0.0196 S33: -0.0497 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0087 -6.6187 11.7915 REMARK 3 T TENSOR REMARK 3 T11: 0.0700 T22: 0.0138 REMARK 3 T33: 0.0713 T12: 0.0117 REMARK 3 T13: 0.0109 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.0844 L22: 0.9427 REMARK 3 L33: 0.6196 L12: -0.1844 REMARK 3 L13: -0.0415 L23: -0.4192 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: -0.0272 S13: -0.0259 REMARK 3 S21: 0.0899 S22: 0.0788 S23: 0.0331 REMARK 3 S31: -0.0656 S32: -0.0130 S33: -0.0444 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1791 0.8013 3.1828 REMARK 3 T TENSOR REMARK 3 T11: 0.0992 T22: 0.0364 REMARK 3 T33: 0.1055 T12: -0.0039 REMARK 3 T13: 0.0008 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 2.3847 L22: 1.5172 REMARK 3 L33: 11.9191 L12: -0.3465 REMARK 3 L13: -0.5225 L23: 4.2365 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: 0.0097 S13: 0.0039 REMARK 3 S21: -0.0479 S22: 0.0027 S23: 0.0294 REMARK 3 S31: -0.1512 S32: -0.0246 S33: 0.0863 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 101 B 101 REMARK 3 RESIDUE RANGE : A 301 A 364 REMARK 3 RESIDUE RANGE : B 201 B 261 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9655 -0.0206 3.2909 REMARK 3 T TENSOR REMARK 3 T11: 0.0457 T22: 0.0267 REMARK 3 T33: 0.0390 T12: -0.0078 REMARK 3 T13: 0.0040 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.2624 L22: 1.1639 REMARK 3 L33: 0.5563 L12: -0.1093 REMARK 3 L13: 0.0547 L23: -0.6874 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: 0.0199 S13: -0.0144 REMARK 3 S21: 0.0001 S22: 0.0589 S23: 0.0229 REMARK 3 S31: -0.0007 S32: -0.0610 S33: -0.0443 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INITIALLY REFINED BY SHELX-2014 BUT REMARK 3 MOVED TO REFMAC DURING LATER CYCLES OF REFINEMENT. REMARK 4 REMARK 4 6O5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21945 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.44400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1SGU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% TACSIMATETM, PH 7.0 (HAMPTON REMARK 280 RESEARCH CORP., ALISO VIEJO, CA). TACSIMATE CONTAINS 1.83 M REMARK 280 MALONIC ACID, 0.25 M AMMONIUM CITRATE TRIBASIC, 0.12 M SUCCINIC REMARK 280 ACID, 0.3 M DL-MALIC ACID, 0.4 M SODIUM ACETATE TRIHYDRATE, 0.5 REMARK 280 M SODIUM FORMATE, AND 0.16 M AMMONIUM TARTRATE DIBASIC., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.67967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.35933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.51950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.19917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.83983 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 87 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 41 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: N-{(2S)-2-[(N-ACETYL-L-THREONYL-L-ISOLEUCYL)AMINO] REMARK 630 HEXYL}-L-NORLEUCYL-L-GLUTAMINYL-N~5~-[AMINO(IMINIO)METHYL]-L- REMARK 630 ORNITHINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 2NC A 201 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: ACE THR ILE 2A0 GLN ARG NH2 REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2NC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6O57 RELATED DB: PDB REMARK 900 MULTI-DRUG RESISTANT HIV-1 PROTEASE PR-S17 WITH A SUBSTRATE ANALOG REMARK 900 P2-NC IN P41 REMARK 900 RELATED ID: 2AOD RELATED DB: PDB REMARK 900 WILD TYPE HIV-1 PROTEASE WITH A SUBSTRATE ANALOG P2-NC REMARK 900 RELATED ID: 6O48 RELATED DB: PDB REMARK 900 WILD TYPE HIV-1 PROTEASE WITH A SUBSTRATE ANALOG CA-P2 REMARK 900 RELATED ID: 6O54 RELATED DB: PDB REMARK 900 MULTI-DRUG RESISTANT HIV-1 PROTEASE PR-S17 (D25N) REMARK 900 RELATED ID: 5T2E RELATED DB: PDB REMARK 900 MULTI-DRUG RESISTANT HIV-1 PROTEASE PR-S17 REMARK 900 RELATED ID: 6O5X RELATED DB: PDB REMARK 900 MULTI-DRUG RESISTANT HIV-1 PROTEASE PR-S17 WITH CA/P2 DBREF 6O5A A 1 99 UNP I7BFC3 I7BFC3_9HIV1 1 99 DBREF 6O5A B 1 99 UNP I7BFC3 I7BFC3_9HIV1 1 99 SEQADV 6O5A LEU A 46 UNP I7BFC3 MET 46 ENGINEERED MUTATION SEQADV 6O5A VAL A 48 UNP I7BFC3 GLY 48 ENGINEERED MUTATION SEQADV 6O5A ALA A 67 UNP I7BFC3 CYS 67 ENGINEERED MUTATION SEQADV 6O5A ILE A 77 UNP I7BFC3 VAL 77 ENGINEERED MUTATION SEQADV 6O5A SER A 82 UNP I7BFC3 ALA 82 ENGINEERED MUTATION SEQADV 6O5A LEU A 93 UNP I7BFC3 ILE 93 ENGINEERED MUTATION SEQADV 6O5A ALA A 95 UNP I7BFC3 CYS 95 ENGINEERED MUTATION SEQADV 6O5A LEU B 46 UNP I7BFC3 MET 46 ENGINEERED MUTATION SEQADV 6O5A VAL B 48 UNP I7BFC3 GLY 48 ENGINEERED MUTATION SEQADV 6O5A ALA B 67 UNP I7BFC3 CYS 67 ENGINEERED MUTATION SEQADV 6O5A ILE B 77 UNP I7BFC3 VAL 77 ENGINEERED MUTATION SEQADV 6O5A SER B 82 UNP I7BFC3 ALA 82 ENGINEERED MUTATION SEQADV 6O5A LEU B 93 UNP I7BFC3 ILE 93 ENGINEERED MUTATION SEQADV 6O5A ALA B 95 UNP I7BFC3 CYS 95 ENGINEERED MUTATION SEQRES 1 A 99 PRO GLN ILE THR LEU TRP GLN ARG PRO ILE VAL THR ILE SEQRES 2 A 99 LYS ILE GLY GLY GLN LEU ARG GLU ALA LEU LEU ASP THR SEQRES 3 A 99 GLY ALA ASP ASP THR VAL LEU GLU ASP ILE ASP LEU PRO SEQRES 4 A 99 GLY ARG TRP LYS PRO LYS LEU ILE VAL GLY ILE GLY GLY SEQRES 5 A 99 PHE VAL LYS VAL ARG GLN TYR GLU GLN VAL PRO ILE GLU SEQRES 6 A 99 ILE ALA GLY HIS LYS VAL VAL GLY THR VAL LEU ILE GLY SEQRES 7 A 99 PRO THR PRO SER ASN ILE ILE GLY ARG ASN LEU MET THR SEQRES 8 A 99 GLN LEU GLY ALA THR LEU ASN PHE SEQRES 1 B 99 PRO GLN ILE THR LEU TRP GLN ARG PRO ILE VAL THR ILE SEQRES 2 B 99 LYS ILE GLY GLY GLN LEU ARG GLU ALA LEU LEU ASP THR SEQRES 3 B 99 GLY ALA ASP ASP THR VAL LEU GLU ASP ILE ASP LEU PRO SEQRES 4 B 99 GLY ARG TRP LYS PRO LYS LEU ILE VAL GLY ILE GLY GLY SEQRES 5 B 99 PHE VAL LYS VAL ARG GLN TYR GLU GLN VAL PRO ILE GLU SEQRES 6 B 99 ILE ALA GLY HIS LYS VAL VAL GLY THR VAL LEU ILE GLY SEQRES 7 B 99 PRO THR PRO SER ASN ILE ILE GLY ARG ASN LEU MET THR SEQRES 8 B 99 GLN LEU GLY ALA THR LEU ASN PHE HET 2NC A 201 58 HET GOL B 101 12 HETNAM 2NC N-{(2S)-2-[(N-ACETYL-L-THREONYL-L-ISOLEUCYL) HETNAM 2 2NC AMINO]HEXYL}-L-NORLEUCYL-L-GLUTAMINYL-N~5~- HETNAM 3 2NC [AMINO(IMINIO)METHYL]-L-ORNITHINAMIDE HETNAM GOL GLYCEROL HETSYN 2NC P2/NC HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 2NC C35 H68 N11 O8 1+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *125(H2 O) HELIX 1 AA1 GLY A 86 THR A 91 1 6 HELIX 2 AA2 GLN A 92 GLY A 94 5 3 HELIX 3 AA3 GLY B 86 THR B 91 1 6 HELIX 4 AA4 GLN B 92 GLY B 94 5 3 SHEET 1 AA1 4 GLN A 2 THR A 4 0 SHEET 2 AA1 4 THR B 96 ASN B 98 -1 O LEU B 97 N ILE A 3 SHEET 3 AA1 4 THR A 96 ASN A 98 -1 N THR A 96 O ASN B 98 SHEET 4 AA1 4 GLN B 2 THR B 4 -1 O ILE B 3 N LEU A 97 SHEET 1 AA2 8 LYS A 43 GLY A 49 0 SHEET 2 AA2 8 GLY A 52 ILE A 66 -1 O GLN A 58 N LYS A 43 SHEET 3 AA2 8 HIS A 69 ILE A 77 -1 O HIS A 69 N ILE A 66 SHEET 4 AA2 8 VAL A 32 LEU A 33 1 N LEU A 33 O LEU A 76 SHEET 5 AA2 8 ILE A 84 ILE A 85 -1 O ILE A 84 N VAL A 32 SHEET 6 AA2 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 85 SHEET 7 AA2 8 ILE A 10 ILE A 15 -1 N ILE A 13 O ARG A 20 SHEET 8 AA2 8 GLY A 52 ILE A 66 -1 O GLU A 65 N LYS A 14 SHEET 1 AA3 8 LYS B 43 GLY B 49 0 SHEET 2 AA3 8 GLY B 52 ILE B 66 -1 O VAL B 56 N LYS B 45 SHEET 3 AA3 8 HIS B 69 ILE B 77 -1 O ILE B 77 N ARG B 57 SHEET 4 AA3 8 VAL B 32 LEU B 33 1 N LEU B 33 O LEU B 76 SHEET 5 AA3 8 ILE B 84 ILE B 85 -1 O ILE B 84 N VAL B 32 SHEET 6 AA3 8 GLN B 18 LEU B 24 1 N LEU B 23 O ILE B 85 SHEET 7 AA3 8 ILE B 10 ILE B 15 -1 N ILE B 13 O ARG B 20 SHEET 8 AA3 8 GLY B 52 ILE B 66 -1 O GLU B 65 N LYS B 14 SITE 1 AC1 29 ARG A 8 ASP A 25 GLY A 27 ALA A 28 SITE 2 AC1 29 ASP A 29 ASP A 30 ILE A 47 VAL A 48 SITE 3 AC1 29 GLY A 49 PRO A 81 SER A 82 ILE A 84 SITE 4 AC1 29 HOH A 312 HOH A 336 HOH A 340 HOH A 357 SITE 5 AC1 29 ARG B 8 ASP B 25 GLY B 27 ALA B 28 SITE 6 AC1 29 ASP B 29 ASP B 30 ILE B 47 VAL B 48 SITE 7 AC1 29 GLY B 49 ILE B 50 PRO B 81 SER B 82 SITE 8 AC1 29 ILE B 84 SITE 1 AC2 6 TRP A 6 GLN A 7 ASP B 29 ARG B 87 SITE 2 AC2 6 HOH B 204 HOH B 214 CRYST1 63.833 63.833 83.039 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015666 0.009045 0.000000 0.00000 SCALE2 0.000000 0.018089 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012043 0.00000