HEADER PROTEIN BINDING 05-MAR-19 6O62 TITLE CRYSTAL STRUCTURE OF SEC4P, A RAB FAMILY GTPASE FROM CANDIDA ALBICANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN SEC4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS (STRAIN SC5314 / ATCC MYA- SOURCE 3 2876); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 237561; SOURCE 6 STRAIN: SC5314 / ATCC MYA-2876; SOURCE 7 GENE: SEC4, CAALFM_CR01750CA, CA49C4.03C, CAO19.10103, CAO19.2571; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3)-MAGIC; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMCSG68SBPTEV KEYWDS G-PROTEIN, RAB, GDP, P-LOOP, GTPASE, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,T.SKARINA,R.DI LEO,A.SAVCHENKO,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 11-OCT-23 6O62 1 REMARK REVDAT 2 18-DEC-19 6O62 1 REMARK REVDAT 1 03-APR-19 6O62 0 JRNL AUTH P.J.STOGIOS JRNL TITL TO BE PUBLISHED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 11796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.0401 - 2.9767 0.98 2974 157 0.2185 0.2583 REMARK 3 2 2.9767 - 2.3634 0.95 2824 148 0.2865 0.3738 REMARK 3 3 2.3634 - 2.0648 0.94 2778 147 0.2945 0.3441 REMARK 3 4 2.0648 - 1.8761 0.89 2630 138 0.3095 0.4047 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1414 REMARK 3 ANGLE : 0.536 1911 REMARK 3 CHIRALITY : 0.044 213 REMARK 3 PLANARITY : 0.002 243 REMARK 3 DIHEDRAL : 20.430 529 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9583 -11.8647 19.2466 REMARK 3 T TENSOR REMARK 3 T11: 0.1891 T22: 0.1502 REMARK 3 T33: 0.1866 T12: -0.0276 REMARK 3 T13: -0.0265 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 3.0314 L22: 2.4701 REMARK 3 L33: 3.8257 L12: -0.0393 REMARK 3 L13: -0.6131 L23: -2.3035 REMARK 3 S TENSOR REMARK 3 S11: -0.1363 S12: -0.0897 S13: -0.1799 REMARK 3 S21: 0.0480 S22: 0.1602 S23: 0.1774 REMARK 3 S31: 0.1565 S32: -0.1327 S33: -0.0179 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3741 0.0410 3.5935 REMARK 3 T TENSOR REMARK 3 T11: 0.3298 T22: 0.2800 REMARK 3 T33: 0.2588 T12: 0.0088 REMARK 3 T13: -0.0786 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 7.7492 L22: 6.7845 REMARK 3 L33: 8.1401 L12: 1.7441 REMARK 3 L13: -1.2915 L23: 1.4601 REMARK 3 S TENSOR REMARK 3 S11: 0.7391 S12: -0.0732 S13: -0.3492 REMARK 3 S21: 0.4043 S22: -0.3939 S23: -0.1953 REMARK 3 S31: 0.9148 S32: 0.9431 S33: -0.2039 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0383 -0.5904 14.0648 REMARK 3 T TENSOR REMARK 3 T11: 0.2719 T22: 0.0486 REMARK 3 T33: 0.2416 T12: -0.0258 REMARK 3 T13: 0.0921 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.3375 L22: 0.4858 REMARK 3 L33: 2.7630 L12: -0.9257 REMARK 3 L13: -0.4640 L23: 0.7677 REMARK 3 S TENSOR REMARK 3 S11: 0.2197 S12: -0.2398 S13: 0.2406 REMARK 3 S21: 0.0340 S22: 0.1321 S23: 0.0860 REMARK 3 S31: -0.2745 S32: 0.3069 S33: -0.0672 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2213 3.5717 6.0109 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.1568 REMARK 3 T33: 0.1910 T12: -0.0505 REMARK 3 T13: -0.0026 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.9060 L22: 1.4053 REMARK 3 L33: 4.7642 L12: -1.4332 REMARK 3 L13: -3.8593 L23: 2.4430 REMARK 3 S TENSOR REMARK 3 S11: 0.2433 S12: -0.2944 S13: 0.6752 REMARK 3 S21: -0.2874 S22: 0.2717 S23: -0.2959 REMARK 3 S31: -0.6200 S32: 0.3136 S33: -0.4401 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4129 1.7847 18.1282 REMARK 3 T TENSOR REMARK 3 T11: 0.1271 T22: 0.2502 REMARK 3 T33: 0.1926 T12: -0.0000 REMARK 3 T13: 0.0123 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 3.0731 L22: 4.4139 REMARK 3 L33: 3.5066 L12: 1.5487 REMARK 3 L13: 1.0086 L23: -1.8103 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: 0.2202 S13: 0.2782 REMARK 3 S21: 0.5733 S22: -0.2436 S23: 0.2543 REMARK 3 S31: -0.3611 S32: -0.6091 S33: 0.1998 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3903 -4.9687 10.6529 REMARK 3 T TENSOR REMARK 3 T11: 0.1578 T22: 0.2170 REMARK 3 T33: 0.1464 T12: -0.0141 REMARK 3 T13: -0.0112 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.4276 L22: 2.0710 REMARK 3 L33: 1.7204 L12: 0.0710 REMARK 3 L13: -0.4337 L23: 0.6102 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.0078 S13: -0.0320 REMARK 3 S21: 0.0416 S22: -0.0284 S23: -0.1604 REMARK 3 S31: -0.0092 S32: 0.2437 S33: 0.0447 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7976 -2.0317 28.0083 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.2693 REMARK 3 T33: 0.1759 T12: -0.0188 REMARK 3 T13: 0.0156 T23: 0.0496 REMARK 3 L TENSOR REMARK 3 L11: 4.1242 L22: 8.4875 REMARK 3 L33: 3.7077 L12: -4.2685 REMARK 3 L13: -1.3089 L23: 3.0255 REMARK 3 S TENSOR REMARK 3 S11: -0.2396 S12: -0.0969 S13: 0.2327 REMARK 3 S21: 0.8472 S22: 0.1236 S23: -0.0339 REMARK 3 S31: 0.0547 S32: -0.1735 S33: 0.1349 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11798 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1Z0A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM PHOSPHATE DIBASIC 2.4M, TRIS REMARK 280 0.1M PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.15050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.04100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.15050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.04100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -11.22439 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.62831 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 330 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 437 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 457 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 PRO A 41 REMARK 465 SER A 42 REMARK 465 PHE A 43 REMARK 465 ILE A 44 REMARK 465 THR A 45 REMARK 465 THR A 46 REMARK 465 ILE A 47 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 140 OH TYR A 169 4556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 163 12.48 59.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 467 DISTANCE = 5.88 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP95542 RELATED DB: TARGETTRACK DBREF 6O62 A 1 184 UNP P0CY31 SEC4_CANAL 1 184 SEQRES 1 A 184 MET SER GLY LYS GLY THR SER SER ARG ALA TYR ASP MET SEQRES 2 A 184 ILE MET LYS LEU LEU LEU VAL GLY ASP SER GLY VAL GLY SEQRES 3 A 184 LYS SER CYS LEU LEU LEU ARG PHE VAL GLU ASP LYS PHE SEQRES 4 A 184 ASN PRO SER PHE ILE THR THR ILE GLY ILE ASP PHE LYS SEQRES 5 A 184 ILE ARG THR ILE GLU SER LYS GLY LYS ARG ILE LYS LEU SEQRES 6 A 184 GLN VAL TRP ASP THR ALA GLY GLN GLU ARG PHE ARG THR SEQRES 7 A 184 ILE THR THR ALA TYR TYR ARG GLY ALA MET GLY ILE VAL SEQRES 8 A 184 LEU ILE TYR ASP VAL THR ASP SER ARG SER PHE GLU ASN SEQRES 9 A 184 VAL GLU ASN TRP PHE GLN THR VAL THR GLN HIS ALA ASN SEQRES 10 A 184 GLU ASP ALA GLN ILE PHE LEU VAL GLY ASN LYS CYS ASP SEQRES 11 A 184 ASP GLU VAL ASN ARG GLN VAL SER LYS GLU GLN GLY GLN SEQRES 12 A 184 GLU LEU ALA ALA LYS LEU ASN VAL PRO PHE LEU GLU ALA SEQRES 13 A 184 SER ALA LYS SER ASN GLU ASN VAL ASP SER ILE PHE TYR SEQRES 14 A 184 GLU LEU ALA SER ILE ILE GLN GLU LYS HIS VAL GLU GLU SEQRES 15 A 184 ASN ILE HET GDP A 201 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 HOH *167(H2 O) HELIX 1 AA1 GLY A 26 GLU A 36 1 11 HELIX 2 AA2 THR A 80 ARG A 85 1 6 HELIX 3 AA3 ASP A 98 ASN A 104 1 7 HELIX 4 AA4 ASN A 104 ALA A 116 1 13 HELIX 5 AA5 SER A 138 ASN A 150 1 13 HELIX 6 AA6 ASN A 163 HIS A 179 1 17 SHEET 1 AA1 6 ASP A 50 SER A 58 0 SHEET 2 AA1 6 LYS A 61 ASP A 69 -1 O ILE A 63 N ILE A 56 SHEET 3 AA1 6 MET A 13 VAL A 20 1 N LEU A 17 O GLN A 66 SHEET 4 AA1 6 GLY A 89 ASP A 95 1 O VAL A 91 N LEU A 18 SHEET 5 AA1 6 GLN A 121 ASN A 127 1 O VAL A 125 N LEU A 92 SHEET 6 AA1 6 PHE A 153 GLU A 155 1 O LEU A 154 N GLY A 126 SITE 1 AC1 19 ARG A 9 ASP A 22 GLY A 24 VAL A 25 SITE 2 AC1 19 GLY A 26 LYS A 27 SER A 28 CYS A 29 SITE 3 AC1 19 ASN A 40 ASN A 127 LYS A 128 ASP A 130 SITE 4 AC1 19 SER A 157 ALA A 158 LYS A 159 HOH A 301 SITE 5 AC1 19 HOH A 302 HOH A 336 HOH A 367 CRYST1 96.301 38.082 43.115 90.00 105.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010384 0.000000 0.002801 0.00000 SCALE2 0.000000 0.026259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024023 0.00000