HEADER LIGASE/TRANSPORT PROTEIN 06-MAR-19 6O6E TITLE CRYSTAL STRUCTURE OF PLTF TRAPPED WITH PLTL USING A PROLINE ADENOSINE TITLE 2 VINYLSULFONAMIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-PROLINE--[L-PROLYL-CARRIER PROTEIN] LIGASE; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: L-PROLYL-AMP LIGASE; COMPND 5 EC: 6.2.1.53; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDYL CARRIER PROTEIN PLTL; COMPND 9 CHAIN: E; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PROTEGENS PF-5; SOURCE 3 ORGANISM_TAXID: 220664; SOURCE 4 STRAIN: ATCC BAA-477 / NRRL B-23932 / PF-5; SOURCE 5 GENE: PLTF, PFL_2792; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET37B; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: PSEUDOMONAS PROTEGENS PF-5; SOURCE 11 ORGANISM_TAXID: 220664; SOURCE 12 STRAIN: ATCC BAA-477 / NRRL B-23932 / PF-5; SOURCE 13 GENE: PLTL, PFL_2786; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS NONRIBOSOMAL PEPTIDE SYNTHETASE, NRPS, TYPE II, BIOSYNTHESIS, KEYWDS 2 PYOLUTEORIN, LIGASE-TRANSPORT PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.C.CORPUZ,L.M.PODUST REVDAT 7 11-OCT-23 6O6E 1 REMARK REVDAT 6 20-JUL-22 6O6E 1 COMPND SOURCE REMARK HET REVDAT 6 2 1 HETNAM FORMUL HELIX SHEET REVDAT 6 3 1 LINK SITE ATOM REVDAT 5 23-DEC-20 6O6E 1 JRNL REVDAT 4 11-NOV-20 6O6E 1 JRNL REVDAT 3 22-JUL-20 6O6E 1 HEADER COMPND SOURCE KEYWDS REVDAT 3 2 1 JRNL REMARK DBREF SEQADV REVDAT 3 3 1 SEQRES ATOM REVDAT 2 17-JUN-20 6O6E 1 JRNL REVDAT 1 08-APR-20 6O6E 0 JRNL AUTH J.C.CORPUZ,L.M.PODUST,T.D.DAVIS,M.J.JAREMKO,M.D.BURKART JRNL TITL DYNAMIC VISUALIZATION OF TYPE II PEPTIDYL CARRIER PROTEIN JRNL TITL 2 RECOGNITION IN PYOLUTEORIN BIOSYNTHESIS. JRNL REF RSC CHEM BIOL V. 1 8 2020 JRNL REFN ESSN 2633-0679 JRNL PMID 33305272 JRNL DOI 10.1039/C9CB00015A REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 55991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2860 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3998 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.4830 REMARK 3 BIN FREE R VALUE SET COUNT : 198 REMARK 3 BIN FREE R VALUE : 0.4700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4337 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.183 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.970 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4516 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4219 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6126 ; 1.692 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9696 ; 1.289 ; 1.589 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 573 ; 7.158 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;32.059 ;21.315 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 694 ;17.145 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;21.014 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 594 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5078 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 935 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6O6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.73 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JANUARY 26, 2018 REMARK 200 DATA SCALING SOFTWARE : XDS JANUARY 26, 2018 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59600 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 85.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 10.03 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.48 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.2.08 REMARK 200 STARTING MODEL: 3E7W REMARK 200 REMARK 200 REMARK: HEXAGONAL PRISM, APPROXIMATELY 50 UM LONG REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MALONIC ACID PH 5.73, 3.18 M REMARK 280 SODIUM FORMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.63333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.63333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.26667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ASP B 449 REMARK 465 ALA B 450 REMARK 465 HIS B 507 REMARK 465 HIS B 508 REMARK 465 HIS B 509 REMARK 465 HIS B 510 REMARK 465 HIS B 511 REMARK 465 HIS B 512 REMARK 465 HIS B 513 REMARK 465 MET E 1 REMARK 465 ASP E 2 REMARK 465 GLY E 20 REMARK 465 PRO E 21 REMARK 465 SER E 22 REMARK 465 ALA E 23 REMARK 465 LYS E 24 REMARK 465 GLU E 25 REMARK 465 GLY E 57 REMARK 465 VAL E 58 REMARK 465 GLU E 86 REMARK 465 SER E 87 REMARK 465 ALA E 88 REMARK 465 LEU E 89 REMARK 465 GLU E 90 REMARK 465 HIS E 91 REMARK 465 HIS E 92 REMARK 465 HIS E 93 REMARK 465 HIS E 94 REMARK 465 HIS E 95 REMARK 465 HIS E 96 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 14 NE CZ NH1 NH2 REMARK 470 SER B 142 OG REMARK 470 SER B 143 OG REMARK 470 THR B 147 OG1 CG2 REMARK 470 GLN B 260 CG CD OE1 NE2 REMARK 470 ASP B 261 CG OD1 OD2 REMARK 470 LYS B 285 CG CD CE NZ REMARK 470 ASP B 296 CG OD1 OD2 REMARK 470 GLU B 322 CG CD OE1 OE2 REMARK 470 GLN B 337 CD OE1 NE2 REMARK 470 LYS B 342 CE NZ REMARK 470 ARG B 347 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 402 CD CE NZ REMARK 470 GLN B 422 CG CD OE1 NE2 REMARK 470 ARG B 448 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 451 CD1 CD2 REMARK 470 LYS B 486 CE NZ REMARK 470 GLU B 497 CG CD OE1 OE2 REMARK 470 LEU B 504 CG CD1 CD2 REMARK 470 GLU B 505 CG CD OE1 OE2 REMARK 470 HIS B 506 CG ND1 CD2 CE1 NE2 REMARK 470 GLU E 5 CG CD OE1 OE2 REMARK 470 VAL E 6 CG1 CG2 REMARK 470 LYS E 9 CG CD CE NZ REMARK 470 ARG E 12 CG CD NE CZ NH1 NH2 REMARK 470 ILE E 14 CD1 REMARK 470 GLU E 16 CG CD OE1 OE2 REMARK 470 ASP E 26 CG OD1 OD2 REMARK 470 LYS E 47 CG CD CE NZ REMARK 470 VAL E 50 CG1 CG2 REMARK 470 ARG E 53 CG CD NE CZ NH1 NH2 REMARK 470 ASP E 54 CG OD1 OD2 REMARK 470 GLU E 55 CG CD OE1 OE2 REMARK 470 SER E 59 OG REMARK 470 THR E 63 OG1 CG2 REMARK 470 HIS E 64 CG ND1 CD2 CE1 NE2 REMARK 470 ILE E 65 CD1 REMARK 470 LYS E 68 CG CD CE NZ REMARK 470 TYR E 69 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS E 71 CD CE NZ REMARK 470 ASP E 72 OD1 OD2 REMARK 470 LEU E 73 CD1 CD2 REMARK 470 ILE E 76 CD1 REMARK 470 SER E 77 OG REMARK 470 LEU E 83 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER E 42 O10 I5M E 801 2.10 REMARK 500 OD2 ASP B 23 O HOH B 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 15 53.67 -154.39 REMARK 500 ASP B 83 115.30 -36.68 REMARK 500 SER B 142 36.76 -88.02 REMARK 500 VAL B 171 99.19 -67.16 REMARK 500 ASP B 267 76.63 -109.75 REMARK 500 PRO B 283 111.83 -36.12 REMARK 500 TYR B 294 57.48 -113.27 REMARK 500 ASN B 309 -144.96 40.46 REMARK 500 ASP B 320 120.96 -39.66 REMARK 500 MET B 364 153.74 -45.64 REMARK 500 ALA B 372 154.60 -44.88 REMARK 500 ASP B 398 -159.31 -130.58 REMARK 500 GLU E 16 -70.72 -83.35 REMARK 500 LEU E 18 -63.14 -120.76 REMARK 500 ARG E 53 -73.65 -70.03 REMARK 500 ASP E 54 -7.03 -53.67 REMARK 500 GLU E 55 49.69 -160.34 REMARK 500 ILE E 65 73.50 -68.43 REMARK 500 LYS E 71 -74.99 -53.27 REMARK 500 LYS E 84 -60.20 -104.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 6O6E B 1 498 UNP Q4KCY5 PLTF_PSEF5 1 498 DBREF 6O6E E 1 86 UNP Q4KCZ1 Q4KCZ1_PSEF5 1 86 SEQADV 6O6E LYS B 499 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E LEU B 500 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E ALA B 501 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E ALA B 502 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E ALA B 503 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E LEU B 504 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E GLU B 505 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E HIS B 506 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E HIS B 507 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E HIS B 508 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E HIS B 509 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E HIS B 510 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E HIS B 511 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E HIS B 512 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E HIS B 513 UNP Q4KCY5 EXPRESSION TAG SEQADV 6O6E SER E 87 UNP Q4KCZ1 EXPRESSION TAG SEQADV 6O6E ALA E 88 UNP Q4KCZ1 EXPRESSION TAG SEQADV 6O6E LEU E 89 UNP Q4KCZ1 EXPRESSION TAG SEQADV 6O6E GLU E 90 UNP Q4KCZ1 EXPRESSION TAG SEQADV 6O6E HIS E 91 UNP Q4KCZ1 EXPRESSION TAG SEQADV 6O6E HIS E 92 UNP Q4KCZ1 EXPRESSION TAG SEQADV 6O6E HIS E 93 UNP Q4KCZ1 EXPRESSION TAG SEQADV 6O6E HIS E 94 UNP Q4KCZ1 EXPRESSION TAG SEQADV 6O6E HIS E 95 UNP Q4KCZ1 EXPRESSION TAG SEQADV 6O6E HIS E 96 UNP Q4KCZ1 EXPRESSION TAG SEQRES 1 B 513 MET LYS LEU LEU HIS GLU ARG MET MET HIS SER LEU ALA SEQRES 2 B 513 ARG TYR PRO ARG GLN THR ALA VAL VAL ASP GLU GLN ASP SEQRES 3 B 513 ALA LEU SER TYR GLU ALA LEU GLU LEU ARG ILE ARG GLU SEQRES 4 B 513 PHE VAL ALA MET LEU CYS ALA LEU GLY VAL GLY GLN GLY SEQRES 5 B 513 GLN ARG ILE LEU LEU TRP ALA HIS LYS SER VAL ASP LEU SEQRES 6 B 513 VAL ALA VAL MET GLN ALA ALA LEU ARG LEU GLY VAL VAL SEQRES 7 B 513 TYR VAL PRO VAL ASP PRO LEU SER PRO VAL SER ARG LEU SEQRES 8 B 513 GLU LYS ILE ALA GLY ASP SER GLN ALA VAL LEU VAL LEU SEQRES 9 B 513 CYS THR ALA ALA ARG LEU GLU GLU LEU ALA GLY SER ALA SEQRES 10 B 513 LEU ALA GLN VAL ARG SER VAL VAL LEU ASP ASP PRO ALA SEQRES 11 B 513 SER ALA GLY TYR TRP ARG ASN ILE ASP THR GLY SER SER SEQRES 12 B 513 VAL VAL PRO THR LEU ALA ILE GLN PRO ASP ASP LEU ALA SEQRES 13 B 513 TYR ILE LEU TYR THR SER GLY SER THR GLY VAL PRO LYS SEQRES 14 B 513 GLY VAL ALA LEU SER HIS GLY ASN ALA LEU ALA PHE VAL SEQRES 15 B 513 ASP TRP ALA CYS GLU ARG TYR CYS PHE GLN PRO GLY GLU SEQRES 16 B 513 ARG PHE ALA ASN HIS ALA PRO LEU HIS PHE ASP LEU SER SEQRES 17 B 513 VAL LEU ASP ILE TYR CYS ALA LEU ASN VAL GLY ALA THR SEQRES 18 B 513 VAL CYS LEU VAL PRO GLU SER ILE ALA PHE SER PRO ARG SEQRES 19 B 513 LEU LEU THR ASP PHE ILE ARG GLN HIS GLU ILE SER ILE SEQRES 20 B 513 TRP TYR SER VAL PRO SER VAL LEU MET MET MET MET GLN SEQRES 21 B 513 ASP GLY ASP LEU LEU SER ASP ILE GLN ASP THR LEU ARG SEQRES 22 B 513 VAL LEU LEU PHE ALA GLY GLU PRO PHE PRO VAL LYS HIS SEQRES 23 B 513 LEU ARG ASP LEU ARG ALA ALA TYR ALA ASP VAL ARG LEU SEQRES 24 B 513 ALA ASN LEU PHE GLY PRO THR GLU THR ASN VAL CYS THR SEQRES 25 B 513 ALA PHE GLU VAL GLY ALA ILE ASP PRO GLU ARG VAL LEU SEQRES 26 B 513 PRO VAL PRO ILE GLY THR ALA ALA SER GLY ASN GLN VAL SEQRES 27 B 513 TRP ALA GLN LYS PRO ASP GLY SER ARG CYS ALA VAL GLY SEQRES 28 B 513 GLU GLU GLY GLU LEU VAL VAL GLN GLY PRO THR VAL MET SEQRES 29 B 513 LEU GLY TYR PHE ALA LYS PRO ALA GLN GLU GLY PRO TYR SEQRES 30 B 513 LYS THR GLY ASP MET VAL ARG GLN ARG PRO ASP GLY ASN SEQRES 31 B 513 TYR GLU TYR LEU GLY ARG ARG ASP ASP MET LEU LYS VAL SEQRES 32 B 513 ARG GLY ASN ARG ILE GLU ARG GLY GLU VAL GLU ALA ALA SEQRES 33 B 513 LEU LEU ALA HIS PRO GLN VAL SER GLU ALA ALA VAL LEU SEQRES 34 B 513 VAL VAL GLY GLU GLY MET ASN ALA GLN LEU TRP GLY VAL SEQRES 35 B 513 LEU VAL ALA HIS THR ARG ASP ALA LEU SER LEU ILE ASP SEQRES 36 B 513 LEU LYS ARG HIS CYS ALA GLN ARG LEU PRO ARG TYR MET SEQRES 37 B 513 ILE ILE ASP LYS VAL LEU CYS LEU ASP ALA LEU PRO ARG SEQRES 38 B 513 ASN ALA ASN GLY LYS VAL ASP ARG PHE ALA LEU ALA ARG SEQRES 39 B 513 GLN VAL GLU GLY LYS LEU ALA ALA ALA LEU GLU HIS HIS SEQRES 40 B 513 HIS HIS HIS HIS HIS HIS SEQRES 1 E 96 MET ASP GLY GLU GLU VAL LYS GLU LYS ILE ARG ARG TYR SEQRES 2 E 96 ILE MET GLU ASP LEU ILE GLY PRO SER ALA LYS GLU ASP SEQRES 3 E 96 GLU LEU ASP ASP GLN THR PRO LEU LEU GLU TRP GLY ILE SEQRES 4 E 96 LEU ASN SER MET ASN ILE VAL LYS LEU MET VAL TYR ILE SEQRES 5 E 96 ARG ASP GLU MET GLY VAL SER ILE PRO SER THR HIS ILE SEQRES 6 E 96 THR GLY LYS TYR PHE LYS ASP LEU ASN ALA ILE SER ARG SEQRES 7 E 96 THR VAL GLU GLN LEU LYS ALA GLU SER ALA LEU GLU HIS SEQRES 8 E 96 HIS HIS HIS HIS HIS HET FMT B 601 3 HET FMT B 602 3 HET FMT B 603 3 HET FMT B 604 3 HET FMT B 605 3 HET FMT B 606 3 HET FMT B 607 3 HET FMT B 608 3 HET FMT B 609 3 HET FMT B 610 3 HET FMT B 611 3 HET FMT B 612 3 HET FMT B 613 3 HET TRS B 614 8 HET MLA B 615 7 HET MLA B 616 7 HET I5M E 801 50 HETNAM FMT FORMIC ACID HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM MLA MALONIC ACID HETNAM I5M 5'-DEOXY-5'-({(2S)-2-({2-[(N-{(2R)-4-[(DIOXO-LAMBDA~5~- HETNAM 2 I5M PHOSPHANYL)OXY]-2-HYDROXY-3,3-DIMETHYLBUTANOYL}-BETA- HETNAM 3 I5M ALANYL)AMINO]ETHYL}SULFANYL)-2-[(2S)-PYRROLIDIN-2- HETNAM 4 I5M YL]ETHANESULFONYL}AMINO)ADENOSINE HETSYN TRS TRIS BUFFER HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 3 FMT 13(C H2 O2) FORMUL 16 TRS C4 H12 N O3 1+ FORMUL 17 MLA 2(C3 H4 O4) FORMUL 19 I5M C27 H44 N9 O11 P S2 FORMUL 20 HOH *104(H2 O) HELIX 1 AA1 LEU B 3 TYR B 15 1 13 HELIX 2 AA2 TYR B 30 GLY B 48 1 19 HELIX 3 AA3 SER B 62 LEU B 75 1 14 HELIX 4 AA4 PRO B 87 GLN B 99 1 13 HELIX 5 AA5 ARG B 109 SER B 116 1 8 HELIX 6 AA6 TYR B 134 ILE B 138 5 5 HELIX 7 AA7 HIS B 175 CYS B 190 1 16 HELIX 8 AA8 ASP B 206 VAL B 218 1 13 HELIX 9 AA9 PRO B 226 ALA B 230 5 5 HELIX 10 AB1 SER B 232 HIS B 243 1 12 HELIX 11 AB2 VAL B 251 GLY B 262 1 12 HELIX 12 AB3 PRO B 283 TYR B 294 1 12 HELIX 13 AB4 PRO B 305 ASN B 309 5 5 HELIX 14 AB5 ARG B 410 ALA B 419 1 10 HELIX 15 AB6 GLU B 433 ALA B 437 5 5 HELIX 16 AB7 SER B 452 GLN B 462 1 11 HELIX 17 AB8 PRO B 465 ILE B 469 5 5 HELIX 18 AB9 ASP B 488 HIS B 506 1 19 HELIX 19 AC1 GLU E 5 LEU E 18 1 14 HELIX 20 AC2 ASN E 44 GLU E 55 1 12 HELIX 21 AC3 PRO E 61 ILE E 65 5 5 HELIX 22 AC4 THR E 66 LYS E 71 1 6 HELIX 23 AC5 ASP E 72 LEU E 83 1 12 SHEET 1 AA1 4 ALA B 27 SER B 29 0 SHEET 2 AA1 4 THR B 19 VAL B 22 -1 N ALA B 20 O LEU B 28 SHEET 3 AA1 4 THR B 221 LEU B 224 1 O LEU B 224 N VAL B 22 SHEET 4 AA1 4 ARG B 196 ASN B 199 1 N PHE B 197 O THR B 221 SHEET 1 AA2 4 VAL B 78 PRO B 81 0 SHEET 2 AA2 4 ARG B 54 LEU B 57 1 N ILE B 55 O VAL B 80 SHEET 3 AA2 4 LEU B 102 CYS B 105 1 O LEU B 104 N LEU B 56 SHEET 4 AA2 4 ARG B 122 VAL B 125 1 O ARG B 122 N VAL B 103 SHEET 1 AA3 3 LEU B 155 THR B 161 0 SHEET 2 AA3 3 LYS B 169 SER B 174 -1 O LEU B 173 N ALA B 156 SHEET 3 AA3 3 GLY B 366 TYR B 367 -1 O GLY B 366 N ALA B 172 SHEET 1 AA4 5 ILE B 247 SER B 250 0 SHEET 2 AA4 5 VAL B 274 PHE B 277 1 O LEU B 276 N TRP B 248 SHEET 3 AA4 5 ARG B 298 PHE B 303 1 O ARG B 298 N LEU B 275 SHEET 4 AA4 5 THR B 312 VAL B 316 -1 O VAL B 316 N LEU B 299 SHEET 5 AA4 5 THR B 331 ALA B 332 -1 O THR B 331 N ALA B 313 SHEET 1 AA5 4 GLN B 337 GLN B 341 0 SHEET 2 AA5 4 GLY B 354 GLN B 359 -1 O GLN B 359 N GLN B 337 SHEET 3 AA5 4 TYR B 377 GLN B 385 -1 O VAL B 383 N GLY B 354 SHEET 4 AA5 4 TYR B 391 ARG B 396 -1 O GLY B 395 N MET B 382 SHEET 1 AA6 2 MET B 400 VAL B 403 0 SHEET 2 AA6 2 ASN B 406 GLU B 409 -1 O ILE B 408 N LEU B 401 SHEET 1 AA7 3 GLU B 425 VAL B 431 0 SHEET 2 AA7 3 GLN B 438 VAL B 444 -1 O GLN B 438 N VAL B 431 SHEET 3 AA7 3 LYS B 472 CYS B 475 1 O LEU B 474 N GLY B 441 LINK OG SER E 42 P I5M E 801 1555 1555 1.53 CRYST1 170.550 170.550 64.900 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005863 0.003385 0.000000 0.00000 SCALE2 0.000000 0.006770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015408 0.00000