HEADER TRANSPORT PROTEIN 07-MAR-19 6O7C TITLE CRYSTAL STRUCTURE OF THE LJCASTOR GATING RING IN THE CA2+ AND K+ STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION CHANNEL CASTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GATING RING (UNP RESIDUES 312-853); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LOTUS JAPONICUS; SOURCE 3 ORGANISM_TAXID: 34305; SOURCE 4 VARIANT: GIFU; SOURCE 5 GENE: CASTOR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SG13009 KEYWDS CALCIUM CHANNEL, RCK DOMAIN, GATING RING, CASTOR, MEMBRANE PROTEIN, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.JIANG,S.KIM REVDAT 3 13-MAR-24 6O7C 1 LINK REVDAT 2 20-NOV-19 6O7C 1 REMARK REVDAT 1 11-SEP-19 6O7C 0 JRNL AUTH S.KIM,W.ZENG,S.BERNARD,J.LIAO,M.VENKATESHWARAN,J.M.ANE, JRNL AUTH 2 Y.JIANG JRNL TITL CA2+-REGULATED CA2+CHANNELS WITH AN RCK GATING RING CONTROL JRNL TITL 2 PLANT SYMBIOTIC ASSOCIATIONS. JRNL REF NAT COMMUN V. 10 3703 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31420535 JRNL DOI 10.1038/S41467-019-11698-5 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 55036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7200 - 4.4500 0.99 3844 148 0.1451 0.1665 REMARK 3 2 4.4500 - 3.5300 1.00 3849 143 0.1502 0.1974 REMARK 3 3 3.5300 - 3.0800 1.00 3801 145 0.1812 0.2166 REMARK 3 4 3.0800 - 2.8000 1.00 3809 143 0.2022 0.2557 REMARK 3 5 2.8000 - 2.6000 1.00 3790 140 0.1937 0.2236 REMARK 3 6 2.6000 - 2.4500 1.00 3787 141 0.1950 0.2415 REMARK 3 7 2.4500 - 2.3300 1.00 3802 147 0.1938 0.2391 REMARK 3 8 2.3300 - 2.2200 1.00 3776 144 0.1945 0.2128 REMARK 3 9 2.2200 - 2.1400 1.00 3812 141 0.1966 0.2371 REMARK 3 10 2.1400 - 2.0700 1.00 3772 142 0.1947 0.2451 REMARK 3 11 2.0700 - 2.0000 1.00 3761 145 0.1984 0.2312 REMARK 3 12 2.0000 - 1.9400 1.00 3849 143 0.2132 0.2370 REMARK 3 13 1.9400 - 1.8900 1.00 3753 139 0.2381 0.2985 REMARK 3 14 1.8900 - 1.8500 0.97 3633 137 0.2536 0.2588 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.362 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 4026 REMARK 3 ANGLE : 1.728 5441 REMARK 3 CHIRALITY : 0.110 631 REMARK 3 PLANARITY : 0.013 707 REMARK 3 DIHEDRAL : 11.803 2492 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 606 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6244 14.1156 -28.0022 REMARK 3 T TENSOR REMARK 3 T11: 0.3269 T22: 0.3041 REMARK 3 T33: 0.3619 T12: -0.0104 REMARK 3 T13: -0.0133 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 1.0147 L22: 1.1192 REMARK 3 L33: 1.7181 L12: -0.0865 REMARK 3 L13: -0.2188 L23: 0.3226 REMARK 3 S TENSOR REMARK 3 S11: -0.0316 S12: -0.0121 S13: -0.0040 REMARK 3 S21: 0.1079 S22: -0.0610 S23: 0.1023 REMARK 3 S31: 0.1325 S32: -0.1474 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 607 THROUGH 766 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7553 20.7930 -45.5111 REMARK 3 T TENSOR REMARK 3 T11: 0.4005 T22: 0.4101 REMARK 3 T33: 0.4296 T12: 0.0254 REMARK 3 T13: -0.0921 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.9107 L22: 1.3599 REMARK 3 L33: 2.2230 L12: 0.9548 REMARK 3 L13: -1.2240 L23: -1.6896 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: -0.0156 S13: -0.0047 REMARK 3 S21: 0.0789 S22: -0.1618 S23: -0.1486 REMARK 3 S31: -0.0826 S32: 0.3630 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 767 THROUGH 852 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.7085 32.1987 -36.0080 REMARK 3 T TENSOR REMARK 3 T11: 0.5133 T22: 0.4294 REMARK 3 T33: 0.4522 T12: 0.1189 REMARK 3 T13: -0.0744 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 1.9026 L22: 0.8766 REMARK 3 L33: 2.4528 L12: -0.5158 REMARK 3 L13: -0.1672 L23: -0.0568 REMARK 3 S TENSOR REMARK 3 S11: 0.0755 S12: 0.2302 S13: 0.3103 REMARK 3 S21: -0.3259 S22: -0.2244 S23: 0.1311 REMARK 3 S31: -0.5323 S32: -0.3391 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O7C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000239424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99996 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 HKL2000_V712-LINUX REMARK 200 DATA SCALING SOFTWARE : HKL-2000 HKL2000_V712-LINUX REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55045 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 23.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.67000 REMARK 200 R SYM FOR SHELL (I) : 1.67000 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THIN RECTANGULAR PRISM WITH SMOOTH EDGE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% W/V PEG550 MME, 50 MM MAGNESIUM REMARK 280 ACETATE, 100 MM TRIS, PH 8.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 62.78450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.78450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.39350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 62.78450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.78450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.39350 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 62.78450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 62.78450 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.39350 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 62.78450 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 62.78450 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 41.39350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 81710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -272.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 312 REMARK 465 GLY A 313 REMARK 465 LYS A 314 REMARK 465 SER A 315 REMARK 465 GLU A 316 REMARK 465 VAL A 317 REMARK 465 VAL A 318 REMARK 465 GLU A 319 REMARK 465 TYR A 699 REMARK 465 VAL A 700 REMARK 465 ALA A 701 REMARK 465 MET A 702 REMARK 465 ALA A 703 REMARK 465 SER A 704 REMARK 465 GLN A 705 REMARK 465 THR A 706 REMARK 465 GLN A 707 REMARK 465 GLY A 708 REMARK 465 GLY A 709 REMARK 465 ASN A 710 REMARK 465 PHE A 711 REMARK 465 SER A 712 REMARK 465 LYS A 713 REMARK 465 GLY A 714 REMARK 465 SER A 715 REMARK 465 TRP A 716 REMARK 465 ILE A 717 REMARK 465 GLY A 718 REMARK 465 GLU A 719 REMARK 465 MET A 720 REMARK 465 LYS A 721 REMARK 465 GLN A 722 REMARK 465 ALA A 723 REMARK 465 SER A 724 REMARK 465 ASP A 725 REMARK 465 LYS A 726 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1156 O HOH A 1377 1.96 REMARK 500 O HOH A 1329 O HOH A 1338 2.17 REMARK 500 O HOH A 1370 O HOH A 1373 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 490 CG GLU A 490 CD 0.105 REMARK 500 GLU A 653 CB GLU A 653 CG -0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 371 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 813 CG - CD - NE ANGL. DEV. = -28.3 DEGREES REMARK 500 ARG A 813 NE - CZ - NH1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 813 NE - CZ - NH2 ANGL. DEV. = 7.6 DEGREES REMARK 500 TYR A 819 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 491 -141.09 61.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 371 0.06 SIDE CHAIN REMARK 500 TYR A 819 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 342 O REMARK 620 2 SER A 345 OG 104.2 REMARK 620 3 ASP A 553 OD1 133.5 98.1 REMARK 620 4 ASP A 554 OD1 147.8 82.4 74.7 REMARK 620 5 HOH A1131 O 70.4 76.2 76.3 140.7 REMARK 620 6 HOH A1229 O 70.9 89.4 150.1 77.7 133.6 REMARK 620 7 HOH A1258 O 85.5 170.2 73.6 90.2 106.2 95.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 442 OD1 REMARK 620 2 ASP A 442 OD2 52.1 REMARK 620 3 ASP A 444 OD2 79.9 131.8 REMARK 620 4 ASP A 591 OD1 126.9 118.1 91.3 REMARK 620 5 ASP A 591 OD2 74.2 80.7 90.0 53.4 REMARK 620 6 HOH A1273 O 146.6 147.9 73.2 73.8 124.3 REMARK 620 7 HOH A1304 O 131.0 79.5 146.9 78.8 108.1 73.7 REMARK 620 8 HOH A1350 O 86.6 84.2 90.8 146.2 160.3 74.6 81.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 444 OD1 REMARK 620 2 HOH A1109 O 131.7 REMARK 620 3 HOH A1226 O 81.7 51.7 REMARK 620 4 HOH A1254 O 94.3 131.6 175.6 REMARK 620 5 HOH A1307 O 84.6 113.3 101.0 80.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1005 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 485 O REMARK 620 2 ILE A 486 O 82.8 REMARK 620 3 LEU A 487 O 75.5 66.1 REMARK 620 4 GLY A 488 O 138.4 78.8 63.0 REMARK 620 5 GLU A 490 O 83.3 164.7 104.0 107.8 REMARK 620 6 CYS A 492 O 81.1 75.2 136.6 128.2 109.0 REMARK 620 7 GLU A 493 OE1 144.6 115.7 138.8 76.7 79.6 75.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 489 O REMARK 620 2 ASN A 491 O 103.1 REMARK 620 3 GLU A 493 OE1 82.2 75.1 REMARK 620 4 GLU A 493 OE2 104.4 114.4 51.8 REMARK 620 5 GLU A 552 O 166.5 85.1 110.6 81.4 REMARK 620 6 HOH A1336 O 83.1 163.3 121.4 78.2 86.2 REMARK 620 7 HOH A1349 O 86.7 82.9 152.3 155.9 83.7 82.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1006 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 776 O REMARK 620 2 ALA A 779 O 95.6 REMARK 620 3 GLU A 781 O 100.8 93.1 REMARK 620 4 ASN A 783 O 84.2 150.9 115.6 REMARK 620 5 HOH A1173 O 175.0 82.0 83.8 95.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1006 DBREF 6O7C A 312 853 UNP Q5H8A6 CASTO_LOTJA 312 853 SEQRES 1 A 542 LYS GLY LYS SER GLU VAL VAL GLU GLN ASN HIS THR LEU SEQRES 2 A 542 ILE LEU GLY TRP SER ASP LYS LEU GLY SER LEU LEU ASN SEQRES 3 A 542 GLN LEU ALA ILE ALA ASN GLU SER LEU GLY GLY GLY THR SEQRES 4 A 542 ILE ALA VAL MET ALA GLU ARG ASP LYS GLU ASP MET GLU SEQRES 5 A 542 LEU ASP ILE GLY LYS MET GLU PHE ASP PHE LYS GLY THR SEQRES 6 A 542 SER VAL ILE CYS ARG SER GLY SER PRO LEU ILE LEU ALA SEQRES 7 A 542 ASP LEU LYS LYS VAL SER VAL SER LYS ALA ARG THR ILE SEQRES 8 A 542 ILE VAL LEU ALA GLU ASP GLY ASN ALA ASP GLN SER ASP SEQRES 9 A 542 ALA ARG ALA LEU ARG THR VAL LEU SER LEU THR GLY VAL SEQRES 10 A 542 LYS GLU GLY LEU ARG GLY HIS ILE VAL VAL GLU MET SER SEQRES 11 A 542 ASP LEU ASP ASN GLU VAL LEU VAL LYS LEU VAL GLY GLY SEQRES 12 A 542 ASP LEU VAL GLU THR VAL VAL ALA HIS ASP VAL ILE GLY SEQRES 13 A 542 ARG LEU MET ILE GLN CYS ALA ARG GLN PRO GLY LEU ALA SEQRES 14 A 542 GLN ILE TRP GLU ASP ILE LEU GLY PHE GLU ASN CYS GLU SEQRES 15 A 542 PHE TYR ILE LYS ARG TRP PRO GLN LEU ASP GLY MET LEU SEQRES 16 A 542 PHE GLU ASP VAL LEU ILE SER PHE PRO ALA ALA ILE PRO SEQRES 17 A 542 CYS GLY ILE LYS VAL ALA SER TYR GLY GLY LYS ILE ILE SEQRES 18 A 542 LEU ASN PRO ASP ASP SER TYR VAL LEU GLN GLU GLY ASP SEQRES 19 A 542 GLU VAL LEU VAL ILE ALA GLU ASP ASP ASP THR TYR ALA SEQRES 20 A 542 PRO ALA PRO LEU PRO MET VAL ARG ARG GLY SER LEU PRO SEQRES 21 A 542 LYS ASP PHE VAL TYR PRO LYS SER PRO GLU ARG ILE LEU SEQRES 22 A 542 PHE CYS GLY TRP ARG ARG ASP MET GLU ASP MET ILE THR SEQRES 23 A 542 VAL LEU ASP ALA SER LEU ALA PRO ASP SER GLU LEU TRP SEQRES 24 A 542 MET PHE ASN ASP VAL PRO GLU LYS GLU ARG GLU LYS LYS SEQRES 25 A 542 LEU ILE ASP GLY GLY LEU ASP ILE SER ARG LEU GLU ASN SEQRES 26 A 542 ILE SER LEU VAL ASN ARG GLU GLY ASN ALA VAL ILE ARG SEQRES 27 A 542 ARG HIS LEU GLU SER LEU PRO LEU GLU SER PHE ASP SER SEQRES 28 A 542 ILE LEU ILE LEU ALA ASP GLU SER VAL GLU ASP SER ALA SEQRES 29 A 542 ILE GLN ALA ASP SER ARG SER LEU ALA THR LEU LEU LEU SEQRES 30 A 542 ILE ARG ASP ILE GLN ALA ARG ARG LEU PRO TYR VAL ALA SEQRES 31 A 542 MET ALA SER GLN THR GLN GLY GLY ASN PHE SER LYS GLY SEQRES 32 A 542 SER TRP ILE GLY GLU MET LYS GLN ALA SER ASP LYS THR SEQRES 33 A 542 VAL ILE ILE SER GLU ILE LEU ASP PRO ARG THR LYS ASN SEQRES 34 A 542 LEU LEU SER MET SER LYS ILE SER ASP TYR VAL LEU SER SEQRES 35 A 542 ASN GLU LEU VAL SER MET ALA LEU ALA MET VAL ALA GLU SEQRES 36 A 542 ASP ARG GLN ILE ASN ASP VAL LEU GLU GLU LEU PHE ALA SEQRES 37 A 542 GLU GLU GLY ASN GLU MET HIS ILE ARG GLN ALA ASP ILE SEQRES 38 A 542 TYR LEU ARG GLU GLY GLU GLU MET SER PHE TYR GLU ILE SEQRES 39 A 542 MET LEU ARG ALA ARG GLN ARG ARG GLU ILE LEU ILE GLY SEQRES 40 A 542 TYR ARG LEU ALA ASN ALA GLU ARG ALA VAL ILE ASN PRO SEQRES 41 A 542 PRO ALA LYS THR GLY ARG ARG LYS TRP SER LEU LYS ASP SEQRES 42 A 542 VAL PHE VAL VAL ILE THR GLU LYS GLU HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET MG A1004 1 HET K A1005 1 HET NA A1006 1 HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM NA SODIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 MG MG 2+ FORMUL 6 K K 1+ FORMUL 7 NA NA 1+ FORMUL 8 HOH *293(H2 O) HELIX 1 AA1 LYS A 331 GLU A 344 1 14 HELIX 2 AA2 SER A 345 GLY A 347 5 3 HELIX 3 AA3 ASP A 358 LYS A 368 1 11 HELIX 4 AA4 ILE A 387 VAL A 394 1 8 HELIX 5 AA5 SER A 395 ALA A 399 5 5 HELIX 6 AA6 ASN A 410 GLY A 427 1 18 HELIX 7 AA7 ASP A 442 ASP A 444 5 3 HELIX 8 AA8 ASN A 445 GLY A 454 1 10 HELIX 9 AA9 ALA A 462 GLN A 476 1 15 HELIX 10 AB1 GLY A 478 LEU A 487 1 10 HELIX 11 AB2 TRP A 499 ASP A 503 5 5 HELIX 12 AB3 LEU A 506 LEU A 511 1 6 HELIX 13 AB4 ALA A 525 GLY A 528 5 4 HELIX 14 AB5 ASP A 591 ALA A 601 1 11 HELIX 15 AB6 PRO A 616 GLY A 627 1 12 HELIX 16 AB7 ASP A 630 LEU A 634 5 5 HELIX 17 AB8 ILE A 648 GLU A 653 1 6 HELIX 18 AB9 SER A 654 LEU A 655 5 2 HELIX 19 AC1 PRO A 656 PHE A 660 5 5 HELIX 20 AC2 SER A 674 ARG A 696 1 23 HELIX 21 AC3 ASP A 735 LEU A 742 1 8 HELIX 22 AC4 SER A 745 ASP A 749 5 5 HELIX 23 AC5 ASN A 754 ASP A 767 1 14 HELIX 24 AC6 GLN A 769 ALA A 779 1 11 HELIX 25 AC7 ASP A 791 TYR A 793 5 3 HELIX 26 AC8 PHE A 802 GLN A 811 1 10 SHEET 1 AA1 6 SER A 377 SER A 382 0 SHEET 2 AA1 6 THR A 350 ALA A 355 1 N VAL A 353 O ILE A 379 SHEET 3 AA1 6 THR A 323 LEU A 326 1 N ILE A 325 O ALA A 352 SHEET 4 AA1 6 THR A 401 VAL A 404 1 O ILE A 403 N LEU A 324 SHEET 5 AA1 6 HIS A 435 MET A 440 1 O VAL A 437 N VAL A 404 SHEET 6 AA1 6 VAL A 457 VAL A 461 1 O GLU A 458 N VAL A 438 SHEET 1 AA2 4 GLU A 493 LYS A 497 0 SHEET 2 AA2 4 GLU A 546 ALA A 551 -1 O VAL A 547 N LYS A 497 SHEET 3 AA2 4 ALA A 517 LYS A 523 -1 N CYS A 520 O LEU A 548 SHEET 4 AA2 4 ILE A 531 LEU A 533 -1 O ILE A 532 N ILE A 522 SHEET 1 AA3 6 ILE A 637 GLU A 643 0 SHEET 2 AA3 6 SER A 607 ASN A 613 1 N LEU A 609 O SER A 638 SHEET 3 AA3 6 ARG A 582 CYS A 586 1 N ILE A 583 O TRP A 610 SHEET 4 AA3 6 SER A 662 ILE A 665 1 O LEU A 664 N LEU A 584 SHEET 5 AA3 6 VAL A 728 ILE A 733 1 O ILE A 730 N ILE A 665 SHEET 6 AA3 6 VAL A 751 SER A 753 1 O LEU A 752 N SER A 731 SHEET 1 AA4 4 ASN A 783 GLN A 789 0 SHEET 2 AA4 4 VAL A 845 GLU A 851 -1 O VAL A 848 N HIS A 786 SHEET 3 AA4 4 GLU A 814 ARG A 820 -1 N ILE A 815 O ILE A 849 SHEET 4 AA4 4 VAL A 828 ILE A 829 -1 O VAL A 828 N TYR A 819 SHEET 1 AA5 2 GLU A 799 SER A 801 0 SHEET 2 AA5 2 ARG A 837 LYS A 839 -1 O ARG A 838 N MET A 800 LINK O ALA A 342 CA CA A1003 1555 1555 2.45 LINK OG SER A 345 CA CA A1003 1555 1555 2.51 LINK OD1 ASP A 442 CA CA A1001 1555 1555 2.54 LINK OD2 ASP A 442 CA CA A1001 1555 1555 2.40 LINK OD2 ASP A 444 CA CA A1001 1555 1555 2.33 LINK OD1 ASP A 444 MG MG A1004 1555 1555 2.34 LINK O ASP A 485 K K A1005 1555 1555 2.65 LINK O ILE A 486 K K A1005 1555 1555 2.94 LINK O LEU A 487 K K A1005 1555 1555 3.18 LINK O GLY A 488 K K A1005 1555 1555 2.68 LINK O PHE A 489 CA CA A1002 1555 1555 2.34 LINK O GLU A 490 K K A1005 1555 1555 2.58 LINK O ASN A 491 CA CA A1002 1555 1555 2.33 LINK O CYS A 492 K K A1005 1555 1555 2.63 LINK OE1 GLU A 493 CA CA A1002 1555 1555 2.60 LINK OE2 GLU A 493 CA CA A1002 1555 1555 2.42 LINK OE1 GLU A 493 K K A1005 1555 1555 2.84 LINK O GLU A 552 CA CA A1002 1555 1555 2.43 LINK OD1 ASP A 553 CA CA A1003 1555 1555 2.51 LINK OD1 ASP A 554 CA CA A1003 1555 1555 2.38 LINK OD1 ASP A 591 CA CA A1001 1555 1555 2.48 LINK OD2 ASP A 591 CA CA A1001 1555 1555 2.38 LINK O GLU A 776 NA NA A1006 1555 1555 2.44 LINK O ALA A 779 NA NA A1006 1555 1555 2.42 LINK O GLU A 781 NA NA A1006 1555 1555 2.42 LINK O ASN A 783 NA NA A1006 1555 1555 2.41 LINK CA CA A1001 O HOH A1273 1555 1555 2.49 LINK CA CA A1001 O HOH A1304 1555 1555 2.19 LINK CA CA A1001 O HOH A1350 1555 1555 2.35 LINK CA CA A1002 O HOH A1336 1555 1555 2.43 LINK CA CA A1002 O HOH A1349 1555 1555 2.48 LINK CA CA A1003 O HOH A1131 1555 1555 2.46 LINK CA CA A1003 O HOH A1229 1555 1555 2.38 LINK CA CA A1003 O HOH A1258 1555 1555 2.38 LINK MG MG A1004 O HOH A1109 1555 1555 2.92 LINK MG MG A1004 O HOH A1226 1555 1555 1.91 LINK MG MG A1004 O HOH A1254 1555 1555 2.12 LINK MG MG A1004 O HOH A1307 1555 1555 2.04 LINK NA NA A1006 O HOH A1173 1555 1555 2.47 SITE 1 AC1 6 ASP A 442 ASP A 444 ASP A 591 HOH A1273 SITE 2 AC1 6 HOH A1304 HOH A1350 SITE 1 AC2 6 PHE A 489 ASN A 491 GLU A 493 GLU A 552 SITE 2 AC2 6 HOH A1336 HOH A1349 SITE 1 AC3 7 ALA A 342 SER A 345 ASP A 553 ASP A 554 SITE 2 AC3 7 HOH A1131 HOH A1229 HOH A1258 SITE 1 AC4 5 ASP A 444 HOH A1109 HOH A1226 HOH A1254 SITE 2 AC4 5 HOH A1307 SITE 1 AC5 7 ASP A 485 ILE A 486 LEU A 487 GLY A 488 SITE 2 AC5 7 GLU A 490 CYS A 492 GLU A 493 SITE 1 AC6 6 GLU A 776 ALA A 779 GLU A 781 GLY A 782 SITE 2 AC6 6 ASN A 783 HOH A1173 CRYST1 125.569 125.569 82.787 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007964 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012079 0.00000