HEADER OXIDOREDUCTASE 07-MAR-19 6O7F TITLE MYCOBACTERIUM TUBERCULOSIS L-ALANINE DEHYDROGENASE X-RAY STRUCTURE IN TITLE 2 COMPLEX WITH N6-ISOBUTYL ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 40 KDA ANTIGEN,TB43; COMPND 5 EC: 1.4.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: ALD, RV2780, MTV002.45; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PETM-11 KEYWDS MYCOBACTERIUM TUBERCULOSIS, PERSISTENCE TB TARGET, L-ALANINE KEYWDS 2 DEHYDROGENASE, NAD DEPENDENT DEHYDROGENASE, STRUCTURAL GENOMICS, KEYWDS 3 PSI-BIOLOGY, STRUCTURES OF MTB PROTEINS CONFERRING SUSCEPTIBILITY TO KEYWDS 4 KNOWN MTB INHIBITORS, MTBI, ANTIMICROBIAL PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-B.KIM,L.-W.HUNG,T.C.TERWILLIGER,C.-Y.KIM,STRUCTURES OF MTB AUTHOR 2 PROTEINS CONFERRING SUSCEPTIBILITY TO KNOWN MTB INHIBITORS (MTBI) REVDAT 2 13-MAR-24 6O7F 1 REMARK REVDAT 1 09-SEP-20 6O7F 0 JRNL AUTH H.-B.KIM,L.-W.HUNG,T.C.TERWILLIGER,C.-Y.KIM JRNL TITL MYCOBACTERIUM TUBERCULOSIS L-ALANINE DEHYDROGENASE X-RAY JRNL TITL 2 STRUCTURE IN COMPLEX WITH N6-ISOBUTYL ADENOSINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV-2762_1694: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 17111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3425 - 4.4042 0.95 2664 172 0.1666 0.2161 REMARK 3 2 4.4042 - 3.4961 0.98 2639 167 0.1632 0.1956 REMARK 3 3 3.4961 - 3.0542 0.99 2627 163 0.2023 0.2451 REMARK 3 4 3.0542 - 2.7750 0.98 2584 166 0.2150 0.2703 REMARK 3 5 2.7750 - 2.5761 0.91 2395 158 0.2265 0.2760 REMARK 3 6 2.5761 - 2.4243 0.72 1871 125 0.2393 0.2666 REMARK 3 7 2.4243 - 2.3028 0.49 1300 80 0.2502 0.3099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2803 REMARK 3 ANGLE : 0.773 3822 REMARK 3 CHIRALITY : 0.053 452 REMARK 3 PLANARITY : 0.005 496 REMARK 3 DIHEDRAL : 11.317 1662 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9756 43.1843 115.7165 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.2189 REMARK 3 T33: 0.2960 T12: 0.1735 REMARK 3 T13: 0.0946 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 1.8316 L22: 1.7619 REMARK 3 L33: 2.2015 L12: -0.2431 REMARK 3 L13: -1.1332 L23: 0.3263 REMARK 3 S TENSOR REMARK 3 S11: 0.1274 S12: -0.1948 S13: 0.0557 REMARK 3 S21: 0.2640 S22: -0.1177 S23: 0.5288 REMARK 3 S31: -0.6129 S32: -0.3105 S33: -0.0378 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8075 50.7295 108.8053 REMARK 3 T TENSOR REMARK 3 T11: 0.4990 T22: 0.3146 REMARK 3 T33: 0.3519 T12: 0.0536 REMARK 3 T13: 0.0358 T23: -0.1434 REMARK 3 L TENSOR REMARK 3 L11: 4.3050 L22: 3.3722 REMARK 3 L33: 2.8674 L12: -0.3523 REMARK 3 L13: 0.8266 L23: -0.9332 REMARK 3 S TENSOR REMARK 3 S11: -0.0928 S12: -0.5328 S13: 0.7804 REMARK 3 S21: 0.2747 S22: 0.0742 S23: 0.2738 REMARK 3 S31: -1.0185 S32: -0.2726 S33: -0.0553 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2795 39.5491 129.7422 REMARK 3 T TENSOR REMARK 3 T11: 0.4601 T22: 0.3662 REMARK 3 T33: 0.1764 T12: 0.0520 REMARK 3 T13: 0.1819 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 2.0957 L22: 2.9654 REMARK 3 L33: 3.4484 L12: -0.0476 REMARK 3 L13: -0.4810 L23: -0.1778 REMARK 3 S TENSOR REMARK 3 S11: 0.3140 S12: -0.3874 S13: 0.0142 REMARK 3 S21: 1.0674 S22: -0.4198 S23: 0.0569 REMARK 3 S31: -0.2068 S32: 0.2202 S33: 0.1455 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000238567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19578 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.98900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 5% 2-PROPANOL, PH REMARK 280 5.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.21150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.52552 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 96.66367 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.21150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.52552 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 96.66367 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.21150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.52552 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 96.66367 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.21150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.52552 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 96.66367 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.21150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.52552 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 96.66367 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.21150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.52552 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 96.66367 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.05104 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 193.32733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.05104 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 193.32733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.05104 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 193.32733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.05104 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 193.32733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.05104 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 193.32733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.05104 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 193.32733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 71210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 88.42300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 44.21150 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 76.57656 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 44.21150 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -25.52552 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 193.32733 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 51.05104 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 193.32733 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 88.42300 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 51.05104 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 193.32733 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 346 114.25 -165.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NKV A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LMP RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH N6-METHYL ADENOSINE DBREF 6O7F A 1 371 UNP P9WQB1 DHA_MYCTU 1 371 SEQRES 1 A 371 MET ARG VAL GLY ILE PRO THR GLU THR LYS ASN ASN GLU SEQRES 2 A 371 PHE ARG VAL ALA ILE THR PRO ALA GLY VAL ALA GLU LEU SEQRES 3 A 371 THR ARG ARG GLY HIS GLU VAL LEU ILE GLN ALA GLY ALA SEQRES 4 A 371 GLY GLU GLY SER ALA ILE THR ASP ALA ASP PHE LYS ALA SEQRES 5 A 371 ALA GLY ALA GLN LEU VAL GLY THR ALA ASP GLN VAL TRP SEQRES 6 A 371 ALA ASP ALA ASP LEU LEU LEU LYS VAL LYS GLU PRO ILE SEQRES 7 A 371 ALA ALA GLU TYR GLY ARG LEU ARG HIS GLY GLN ILE LEU SEQRES 8 A 371 PHE THR PHE LEU HIS LEU ALA ALA SER ARG ALA CYS THR SEQRES 9 A 371 ASP ALA LEU LEU ASP SER GLY THR THR SER ILE ALA TYR SEQRES 10 A 371 GLU THR VAL GLN THR ALA ASP GLY ALA LEU PRO LEU LEU SEQRES 11 A 371 ALA PRO MET SER GLU VAL ALA GLY ARG LEU ALA ALA GLN SEQRES 12 A 371 VAL GLY ALA TYR HIS LEU MET ARG THR GLN GLY GLY ARG SEQRES 13 A 371 GLY VAL LEU MET GLY GLY VAL PRO GLY VAL GLU PRO ALA SEQRES 14 A 371 ASP VAL VAL VAL ILE GLY ALA GLY THR ALA GLY TYR ASN SEQRES 15 A 371 ALA ALA ARG ILE ALA ASN GLY MET GLY ALA THR VAL THR SEQRES 16 A 371 VAL LEU ASP ILE ASN ILE ASP LYS LEU ARG GLN LEU ASP SEQRES 17 A 371 ALA GLU PHE CYS GLY ARG ILE HIS THR ARG TYR SER SER SEQRES 18 A 371 ALA TYR GLU LEU GLU GLY ALA VAL LYS ARG ALA ASP LEU SEQRES 19 A 371 VAL ILE GLY ALA VAL LEU VAL PRO GLY ALA LYS ALA PRO SEQRES 20 A 371 LYS LEU VAL SER ASN SER LEU VAL ALA HIS MET LYS PRO SEQRES 21 A 371 GLY ALA VAL LEU VAL ASP ILE ALA ILE ASP GLN GLY GLY SEQRES 22 A 371 CYS PHE GLU GLY SER ARG PRO THR THR TYR ASP HIS PRO SEQRES 23 A 371 THR PHE ALA VAL HIS ASP THR LEU PHE TYR CYS VAL ALA SEQRES 24 A 371 ASN MET PRO ALA SER VAL PRO LYS THR SER THR TYR ALA SEQRES 25 A 371 LEU THR ASN ALA THR MET PRO TYR VAL LEU GLU LEU ALA SEQRES 26 A 371 ASP HIS GLY TRP ARG ALA ALA CYS ARG SER ASN PRO ALA SEQRES 27 A 371 LEU ALA LYS GLY LEU SER THR HIS GLU GLY ALA LEU LEU SEQRES 28 A 371 SER GLU ARG VAL ALA THR ASP LEU GLY VAL PRO PHE THR SEQRES 29 A 371 GLU PRO ALA SER VAL LEU ALA HET NKV A 401 24 HETNAM NKV N-(2-METHYLPROPANOYL)ADENOSINE FORMUL 2 NKV C14 H19 N5 O5 FORMUL 3 HOH *106(H2 O) HELIX 1 AA1 THR A 19 ARG A 29 1 11 HELIX 2 AA2 GLY A 40 ALA A 44 5 5 HELIX 3 AA3 THR A 46 ALA A 53 1 8 HELIX 4 AA4 THR A 60 ALA A 68 1 9 HELIX 5 AA5 ILE A 78 LEU A 85 5 8 HELIX 6 AA6 HIS A 96 ALA A 99 5 4 HELIX 7 AA7 SER A 100 GLY A 111 1 12 HELIX 8 AA8 GLU A 118 VAL A 120 5 3 HELIX 9 AA9 LEU A 130 LEU A 149 1 20 HELIX 10 AB1 MET A 150 GLY A 154 5 5 HELIX 11 AB2 GLY A 177 MET A 190 1 14 HELIX 12 AB3 ASN A 200 PHE A 211 1 12 HELIX 13 AB4 SER A 221 ALA A 232 1 12 HELIX 14 AB5 SER A 251 HIS A 257 1 7 HELIX 15 AB6 ALA A 268 GLY A 272 5 5 HELIX 16 AB7 ASN A 300 SER A 304 5 5 HELIX 17 AB8 VAL A 305 ASN A 336 1 32 HELIX 18 AB9 ASN A 336 LYS A 341 1 6 HELIX 19 AC1 SER A 352 GLY A 360 1 9 HELIX 20 AC2 GLU A 365 ALA A 371 1 7 SHEET 1 AA1 8 GLN A 56 VAL A 58 0 SHEET 2 AA1 8 VAL A 33 GLN A 36 1 N VAL A 33 O GLN A 56 SHEET 3 AA1 8 VAL A 3 ILE A 5 1 N VAL A 3 O LEU A 34 SHEET 4 AA1 8 LEU A 70 LEU A 72 1 O LEU A 70 N GLY A 4 SHEET 5 AA1 8 ILE A 90 THR A 93 1 O ILE A 90 N LEU A 71 SHEET 6 AA1 8 THR A 113 ALA A 116 1 O THR A 113 N LEU A 91 SHEET 7 AA1 8 LEU A 343 HIS A 346 -1 O SER A 344 N SER A 114 SHEET 8 AA1 8 ALA A 349 LEU A 350 -1 O ALA A 349 N HIS A 346 SHEET 1 AA2 7 HIS A 216 TYR A 219 0 SHEET 2 AA2 7 THR A 193 ASP A 198 1 N VAL A 196 O HIS A 216 SHEET 3 AA2 7 ASP A 170 ILE A 174 1 N VAL A 173 O LEU A 197 SHEET 4 AA2 7 LEU A 234 GLY A 237 1 O ILE A 236 N VAL A 172 SHEET 5 AA2 7 VAL A 263 ASP A 266 1 O VAL A 265 N GLY A 237 SHEET 6 AA2 7 THR A 293 TYR A 296 1 O TYR A 296 N LEU A 264 SHEET 7 AA2 7 THR A 287 VAL A 290 -1 N VAL A 290 O THR A 293 SITE 1 AC1 7 GLY A 175 ASP A 198 LYS A 203 SER A 220 SITE 2 AC1 7 VAL A 239 LEU A 240 LEU A 249 CRYST1 88.423 88.423 289.991 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011309 0.006529 0.000000 0.00000 SCALE2 0.000000 0.013059 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003448 0.00000