HEADER DNA BINDING PROTEIN/DNA 10-MAR-19 6O8H TITLE CRYSTAL STRUCTURE OF UVRB MUTANT BOUND TO DUPLEX DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: UVRABC SYSTEM PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN UVRB,EXCINUCLEASE ABC SUBUNIT B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*CP*CP*AP*TP*CP*GP*CP*GP*CP*TP*AP*CP*C)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*AP*GP*CP*GP*CP*GP*AP*TP*GP*GP*AP*GP*A)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CALDOTENAX; SOURCE 3 ORGANISM_TAXID: 1395; SOURCE 4 GENE: UVRB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS DNA REPAIR, NUCLEOTIDE EXCISION REPAIR, DNA BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.-J.LEE,G.L.VERDINE REVDAT 2 13-MAR-24 6O8H 1 REMARK REVDAT 1 22-JAN-20 6O8H 0 JRNL AUTH S.J.LEE,R.J.SUNG,G.L.VERDINE JRNL TITL MECHANISM OF DNA LESION HOMING AND RECOGNITION BY THE UVR JRNL TITL 2 NUCLEOTIDE EXCISION REPAIR SYSTEM. JRNL REF RES V.2019 41746 2019 JRNL REFN ESSN 2639-5274 JRNL PMID 31549070 JRNL DOI 10.34133/2019/5641746 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1540 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2046 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4600 REMARK 3 NUCLEIC ACID ATOMS : 531 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.466 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.291 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.215 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5297 ; 0.005 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 4905 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7264 ; 1.049 ; 1.878 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11270 ; 2.269 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 5.722 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 239 ;35.774 ;23.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 870 ;16.209 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;15.422 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 798 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5595 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1222 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6O8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979200 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(220) SIDE BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30412 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SULFATE, 18-20% REMARK 280 PEG3350, 2 MM ADP, 5 MM MAGNESIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.08750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.39550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.39550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.04375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.39550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.39550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.13125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.39550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.39550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.04375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.39550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.39550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.13125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.08750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 93 REMARK 465 ASP A 94 REMARK 465 TYR A 95 REMARK 465 TYR A 96 REMARK 465 GLN A 97 REMARK 465 PRO A 98 REMARK 465 GLU A 99 REMARK 465 ALA A 100 REMARK 465 TYR A 101 REMARK 465 VAL A 102 REMARK 465 PRO A 103 REMARK 465 GLN A 104 REMARK 465 THR A 105 REMARK 465 ASP A 106 REMARK 465 THR A 107 REMARK 465 TYR A 108 REMARK 465 ILE A 109 REMARK 465 GLU A 110 REMARK 465 LYS A 111 REMARK 465 ASP A 112 REMARK 465 GLY A 301 REMARK 465 PHE A 302 REMARK 465 DT B 1 REMARK 465 DC B 2 REMARK 465 DT B 3 REMARK 465 DG C 1 REMARK 465 DG C 2 REMARK 465 DT C 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT B 13 C7 REMARK 470 DT C 11 C7 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 239 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 180 22.42 82.41 REMARK 500 ASN A 184 89.34 -161.76 REMARK 500 PHE A 188 54.59 -120.00 REMARK 500 ARG A 190 130.17 -39.03 REMARK 500 ARG A 298 -36.78 -141.69 REMARK 500 ASN A 387 -73.15 -95.35 REMARK 500 LEU A 505 79.39 -105.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 604 DBREF 6O8H A 1 593 UNP P56981 UVRB_BACCA 2 593 DBREF 6O8H B 1 16 PDB 6O8H 6O8H 1 16 DBREF 6O8H C 1 16 PDB 6O8H 6O8H 1 16 SEQADV 6O8H CYS A 91 UNP P56981 SER 92 CONFLICT SEQADV 6O8H SER A 144 UNP P56981 CYS 145 CONFLICT SEQADV 6O8H ARG A 190 UNP P56981 INSERTION SEQADV 6O8H SER A 211 UNP P56981 CYS 211 CONFLICT SEQADV 6O8H GLU A 233 UNP P56981 LYS 233 CONFLICT SEQADV 6O8H SER A 303 UNP P56981 CYS 303 CONFLICT SEQADV 6O8H ALA A 527 UNP P56981 PHE 527 CONFLICT SEQRES 1 A 593 VAL GLU GLY ARG PHE GLN LEU VAL ALA PRO TYR GLU PRO SEQRES 2 A 593 GLN GLY ASP GLN PRO GLN ALA ILE ALA LYS LEU VAL ASP SEQRES 3 A 593 GLY LEU ARG ARG GLY VAL LYS HIS GLN THR LEU LEU GLY SEQRES 4 A 593 ALA THR GLY THR GLY LYS THR PHE THR ILE SER ASN VAL SEQRES 5 A 593 ILE ALA GLN VAL ASN LYS PRO THR LEU VAL ILE ALA HIS SEQRES 6 A 593 ASN LYS THR LEU ALA GLY GLN LEU TYR SER GLU LEU LYS SEQRES 7 A 593 GLU PHE PHE PRO HIS ASN ALA VAL GLU TYR PHE VAL CYS SEQRES 8 A 593 TYR TYR ASP TYR TYR GLN PRO GLU ALA TYR VAL PRO GLN SEQRES 9 A 593 THR ASP THR TYR ILE GLU LYS ASP ALA LYS ILE ASN ASP SEQRES 10 A 593 GLU ILE ASP LYS LEU ARG HIS SER ALA THR SER ALA LEU SEQRES 11 A 593 PHE GLU ARG ARG ASP VAL ILE ILE VAL ALA SER VAL SER SEQRES 12 A 593 SER ILE TYR GLY LEU GLY SER PRO GLU GLU TYR ARG GLU SEQRES 13 A 593 LEU VAL VAL SER LEU ARG VAL GLY MET GLU ILE GLU ARG SEQRES 14 A 593 ASN ALA LEU LEU ARG ARG LEU VAL ASP ILE GLN TYR ASP SEQRES 15 A 593 ARG ASN ASP ILE ASP PHE ARG ARG GLY THR PHE ARG VAL SEQRES 16 A 593 ARG GLY ASP VAL VAL GLU ILE PHE PRO ALA SER ARG ASP SEQRES 17 A 593 GLU HIS SER ILE ARG VAL GLU PHE PHE GLY ASP GLU ILE SEQRES 18 A 593 GLU ARG ILE ARG GLU VAL ASP ALA LEU THR GLY GLU VAL SEQRES 19 A 593 LEU GLY GLU ARG GLU HIS VAL ALA ILE PHE PRO ALA SER SEQRES 20 A 593 HIS PHE VAL THR ARG GLU GLU LYS MET ARG LEU ALA ILE SEQRES 21 A 593 GLN ASN ILE GLU GLN GLU LEU GLU GLU ARG LEU ALA GLU SEQRES 22 A 593 LEU ARG ALA GLN GLY LYS LEU LEU GLU ALA GLN ARG LEU SEQRES 23 A 593 GLU GLN ARG THR ARG TYR ASP LEU GLU MET MET ARG GLU SEQRES 24 A 593 MET GLY PHE SER SER GLY ILE GLU ASN TYR SER ARG HIS SEQRES 25 A 593 LEU ALA LEU ARG PRO PRO GLY SER THR PRO TYR THR LEU SEQRES 26 A 593 LEU ASP TYR PHE PRO ASP ASP PHE LEU ILE ILE VAL ASP SEQRES 27 A 593 GLU SER HIS VAL THR LEU PRO GLN LEU ARG GLY MET TYR SEQRES 28 A 593 ASN GLY ASP ARG ALA ARG LYS GLN VAL LEU VAL ASP HIS SEQRES 29 A 593 GLY PHE ARG LEU PRO SER ALA LEU ASP ASN ARG PRO LEU SEQRES 30 A 593 THR PHE GLU GLU PHE GLU GLN LYS ILE ASN GLN ILE ILE SEQRES 31 A 593 TYR VAL SER ALA THR PRO GLY PRO TYR GLU LEU GLU HIS SEQRES 32 A 593 SER PRO GLY VAL VAL GLU GLN ILE ILE ARG PRO THR GLY SEQRES 33 A 593 LEU LEU ASP PRO THR ILE ASP VAL ARG PRO THR LYS GLY SEQRES 34 A 593 GLN ILE ASP ASP LEU ILE GLY GLU ILE ARG GLU ARG VAL SEQRES 35 A 593 GLU ARG ASN GLU ARG THR LEU VAL THR THR LEU THR LYS SEQRES 36 A 593 LYS MET ALA GLU ASP LEU THR ASP TYR LEU LYS GLU ALA SEQRES 37 A 593 GLY ILE LYS VAL ALA TYR LEU HIS SER GLU ILE LYS THR SEQRES 38 A 593 LEU GLU ARG ILE GLU ILE ILE ARG ASP LEU ARG LEU GLY SEQRES 39 A 593 LYS TYR ASP VAL LEU VAL GLY ILE ASN LEU LEU ARG GLU SEQRES 40 A 593 GLY LEU ASP ILE PRO GLU VAL SER LEU VAL ALA ILE LEU SEQRES 41 A 593 ASP ALA ASP LYS GLU GLY ALA LEU ARG SER GLU ARG SER SEQRES 42 A 593 LEU ILE GLN THR ILE GLY ARG ALA ALA ARG ASN ALA ASN SEQRES 43 A 593 GLY HIS VAL ILE MET TYR ALA ASP THR ILE THR LYS SER SEQRES 44 A 593 MET GLU ILE ALA ILE GLN GLU THR LYS ARG ARG ARG ALA SEQRES 45 A 593 ILE GLN GLU GLU TYR ASN ARG LYS HIS GLY ILE VAL PRO SEQRES 46 A 593 ARG THR VAL LYS LYS GLU ILE ARG SEQRES 1 B 16 DT DC DT DC DC DA DT DC DG DC DG DC DT SEQRES 2 B 16 DA DC DC SEQRES 1 C 16 DG DG DT DA DG DC DG DC DG DA DT DG DG SEQRES 2 C 16 DA DG DA HET SO4 A 601 5 HET SO4 A 602 5 HET CL A 603 1 HET CL A 604 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 CL 2(CL 1-) FORMUL 8 HOH *158(H2 O) HELIX 1 AA1 ASP A 16 ARG A 30 1 15 HELIX 2 AA2 GLY A 44 ASN A 57 1 14 HELIX 3 AA3 ASN A 66 PHE A 81 1 16 HELIX 4 AA4 LYS A 114 PHE A 131 1 18 HELIX 5 AA5 SER A 150 LEU A 157 1 8 HELIX 6 AA6 GLU A 168 ILE A 179 1 12 HELIX 7 AA7 ARG A 252 GLN A 277 1 26 HELIX 8 AA8 LYS A 279 MET A 300 1 22 HELIX 9 AA9 GLY A 305 ASN A 308 5 4 HELIX 10 AB1 TYR A 309 ALA A 314 1 6 HELIX 11 AB2 THR A 324 PHE A 329 5 6 HELIX 12 AB3 GLU A 339 HIS A 364 1 26 HELIX 13 AB4 LEU A 368 ASN A 374 5 7 HELIX 14 AB5 THR A 378 ILE A 386 1 9 HELIX 15 AB6 GLY A 397 SER A 404 1 8 HELIX 16 AB7 GLY A 429 ARG A 444 1 16 HELIX 17 AB8 THR A 454 ALA A 468 1 15 HELIX 18 AB9 LYS A 480 GLY A 494 1 15 HELIX 19 AC1 SER A 530 GLY A 539 1 10 HELIX 20 AC2 ARG A 540 ALA A 542 5 3 HELIX 21 AC3 THR A 557 GLY A 582 1 26 SHEET 1 AA1 7 ALA A 85 PHE A 89 0 SHEET 2 AA1 7 VAL A 136 SER A 141 1 O ILE A 137 N GLU A 87 SHEET 3 AA1 7 THR A 60 ALA A 64 1 N VAL A 62 O ILE A 138 SHEET 4 AA1 7 LEU A 334 ASP A 338 1 O ILE A 336 N ILE A 63 SHEET 5 AA1 7 GLN A 388 SER A 393 1 O VAL A 392 N VAL A 337 SHEET 6 AA1 7 HIS A 34 GLY A 39 1 N LEU A 37 O TYR A 391 SHEET 7 AA1 7 VAL A 408 GLN A 410 1 O VAL A 408 N THR A 36 SHEET 1 AA2 2 VAL A 159 ARG A 162 0 SHEET 2 AA2 2 HIS A 240 ILE A 243 -1 O ILE A 243 N VAL A 159 SHEET 1 AA3 6 ASP A 182 ARG A 183 0 SHEET 2 AA3 6 THR A 192 ARG A 196 1 O PHE A 193 N ASP A 182 SHEET 3 AA3 6 VAL A 199 ILE A 202 -1 O GLU A 201 N ARG A 194 SHEET 4 AA3 6 HIS A 210 PHE A 216 -1 O VAL A 214 N VAL A 200 SHEET 5 AA3 6 ILE A 221 ASP A 228 -1 O ARG A 223 N GLU A 215 SHEET 6 AA3 6 VAL A 234 GLU A 237 -1 O LEU A 235 N GLU A 226 SHEET 1 AA4 6 THR A 421 ARG A 425 0 SHEET 2 AA4 6 HIS A 548 TYR A 552 1 O VAL A 549 N THR A 421 SHEET 3 AA4 6 VAL A 514 LEU A 520 1 N SER A 515 O HIS A 548 SHEET 4 AA4 6 ARG A 447 THR A 451 1 N LEU A 449 O ALA A 518 SHEET 5 AA4 6 VAL A 498 GLY A 501 1 O LEU A 499 N VAL A 450 SHEET 6 AA4 6 VAL A 472 TYR A 474 1 N ALA A 473 O VAL A 500 SITE 1 AC1 5 LYS A 121 ARG A 207 ASP A 208 GLU A 209 SITE 2 AC1 5 HIS A 210 SITE 1 AC2 9 ALA A 40 THR A 41 GLY A 42 THR A 43 SITE 2 AC2 9 GLY A 44 LYS A 45 ARG A 543 HOH A 740 SITE 3 AC2 9 HOH A 763 SITE 1 AC3 4 LEU A 401 GLU A 402 SER A 404 HOH A 852 SITE 1 AC4 1 ARG A 169 CRYST1 124.791 124.791 96.175 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010398 0.00000