HEADER DNA BINDING PROTEIN/DNA 11-MAR-19 6O8Q TITLE HUAA 19BP SYM DNA PH 4.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN HU-ALPHA; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J; COMPND 4 SYNONYM: HU-2,NS2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (57-MER); COMPND 8 CHAIN: K; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (57-MER); COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: HUPA, B4000, JW3964; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 15 ORGANISM_TAXID: 562 KEYWDS NUCLEOID ASSOCIATED PROTEIN, DNA SUPERCOILING, HISTONE LIKE PROTEINS, KEYWDS 2 DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.G.REMESH,M.HAMMEL REVDAT 3 13-MAR-24 6O8Q 1 REMARK REVDAT 2 30-SEP-20 6O8Q 1 JRNL REVDAT 1 18-MAR-20 6O8Q 0 JRNL AUTH S.G.REMESH,S.C.VERMA,J.H.CHEN,A.A.EKMAN,C.A.LARABELL, JRNL AUTH 2 S.ADHYA,M.HAMMEL JRNL TITL NUCLEOID REMODELING DURING ENVIRONMENTAL ADAPTATION IS JRNL TITL 2 REGULATED BY HU-DEPENDENT DNA BUNDLING. JRNL REF NAT COMMUN V. 11 2905 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32518228 JRNL DOI 10.1038/S41467-020-16724-5 REMARK 2 REMARK 2 RESOLUTION. 3.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 20462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.1859 - 7.7431 0.99 1525 155 0.1929 0.2232 REMARK 3 2 7.7431 - 6.1495 0.99 1436 160 0.2453 0.2643 REMARK 3 3 6.1495 - 5.3732 1.00 1431 149 0.2479 0.3102 REMARK 3 4 5.3732 - 4.8824 1.00 1419 156 0.2405 0.2378 REMARK 3 5 4.8824 - 4.5327 0.99 1383 150 0.2267 0.2793 REMARK 3 6 4.5327 - 4.2656 0.99 1365 150 0.2232 0.2752 REMARK 3 7 4.2656 - 4.0520 0.99 1395 145 0.2457 0.2762 REMARK 3 8 4.0520 - 3.8757 0.98 1360 151 0.2709 0.3367 REMARK 3 9 3.8757 - 3.7266 0.98 1355 136 0.2906 0.3159 REMARK 3 10 3.7266 - 3.5980 0.93 1279 147 0.2993 0.3470 REMARK 3 11 3.5980 - 3.4855 0.90 1250 127 0.3300 0.4021 REMARK 3 12 3.4855 - 3.3859 0.86 1192 130 0.3338 0.3671 REMARK 3 13 3.3859 - 3.2968 0.84 1144 118 0.3251 0.3806 REMARK 3 14 3.2968 - 3.2164 0.69 944 110 0.3270 0.3706 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 8685 REMARK 3 ANGLE : 0.692 12203 REMARK 3 CHIRALITY : 0.043 1480 REMARK 3 PLANARITY : 0.003 1169 REMARK 3 DIHEDRAL : 19.387 4874 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115830 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20484 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.216 REMARK 200 RESOLUTION RANGE LOW (A) : 50.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.17720 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.38800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-MALONATE, PH 4.0 12% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.70550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 175.60150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.57550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 175.60150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.70550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.57550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -262.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 56 REMARK 465 GLU A 57 REMARK 465 ARG A 58 REMARK 465 THR A 59 REMARK 465 GLY A 60 REMARK 465 ARG A 61 REMARK 465 ASN A 62 REMARK 465 PRO A 63 REMARK 465 GLN A 64 REMARK 465 THR A 65 REMARK 465 GLY A 66 REMARK 465 LYS A 67 REMARK 465 GLU A 68 REMARK 465 ILE A 69 REMARK 465 LYS A 70 REMARK 465 ILE A 71 REMARK 465 ALA D 56 REMARK 465 GLU D 57 REMARK 465 ARG D 58 REMARK 465 THR D 59 REMARK 465 GLY D 60 REMARK 465 ARG D 61 REMARK 465 ASN D 62 REMARK 465 PRO D 63 REMARK 465 GLN D 64 REMARK 465 THR D 65 REMARK 465 GLY D 66 REMARK 465 LYS D 67 REMARK 465 GLU D 68 REMARK 465 ILE D 69 REMARK 465 LYS D 70 REMARK 465 ILE D 71 REMARK 465 ALA E 56 REMARK 465 GLU E 57 REMARK 465 ARG E 58 REMARK 465 THR E 59 REMARK 465 GLY E 60 REMARK 465 ARG E 61 REMARK 465 ASN E 62 REMARK 465 PRO E 63 REMARK 465 GLN E 64 REMARK 465 THR E 65 REMARK 465 GLY E 66 REMARK 465 LYS E 67 REMARK 465 GLU E 68 REMARK 465 ILE E 69 REMARK 465 LYS E 70 REMARK 465 ILE E 71 REMARK 465 ALA E 72 REMARK 465 ALA E 73 REMARK 465 THR I 59 REMARK 465 GLY I 60 REMARK 465 ARG I 61 REMARK 465 ASN I 62 REMARK 465 PRO I 63 REMARK 465 GLN I 64 REMARK 465 THR I 65 REMARK 465 GLY I 66 REMARK 465 LYS I 67 REMARK 465 GLU I 68 REMARK 465 ILE I 69 REMARK 465 LYS I 70 REMARK 465 ILE I 71 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 ARG A 55 CD NE CZ NH1 NH2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 GLN B 64 CG CD OE1 NE2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 THR C 4 OG1 CG2 REMARK 470 ARG C 58 CD NE CZ NH1 NH2 REMARK 470 LYS C 67 CG CD CE NZ REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 ARG D 55 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 90 CG CD CE NZ REMARK 470 GLN E 20 CG CD OE1 NE2 REMARK 470 HIS E 54 CG ND1 CD2 CE1 NE2 REMARK 470 ARG E 55 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 83 CG CD CE NZ REMARK 470 LYS E 90 CG CD CE NZ REMARK 470 GLN F 43 CG CD OE1 NE2 REMARK 470 ARG F 55 CD NE CZ NH1 NH2 REMARK 470 GLU F 57 CG CD OE1 OE2 REMARK 470 ARG F 58 CG CD NE CZ NH1 NH2 REMARK 470 THR F 59 OG1 CG2 REMARK 470 LYS F 67 CG CD CE NZ REMARK 470 LYS F 70 CG CD CE NZ REMARK 470 LYS F 83 CG CD CE NZ REMARK 470 LYS F 90 CG CD CE NZ REMARK 470 GLU G 12 CG CD OE1 OE2 REMARK 470 LYS G 13 CG CD CE NZ REMARK 470 GLU G 57 CG CD OE1 OE2 REMARK 470 ARG G 58 CD NE CZ NH1 NH2 REMARK 470 THR G 59 OG1 CG2 REMARK 470 ARG G 61 CG CD NE CZ NH1 NH2 REMARK 470 ASN G 62 CG OD1 ND2 REMARK 470 GLN G 64 CG CD OE1 NE2 REMARK 470 THR G 65 OG1 CG2 REMARK 470 LYS G 67 CG CD CE NZ REMARK 470 GLU G 68 CG CD OE1 OE2 REMARK 470 ILE G 69 CG1 CG2 CD1 REMARK 470 LYS G 70 CG CD CE NZ REMARK 470 ARG H 61 CG CD NE CZ NH1 NH2 REMARK 470 LYS H 67 CG CD CE NZ REMARK 470 LYS I 83 CG CD CE NZ REMARK 470 LYS I 90 CG CD CE NZ REMARK 470 LYS J 51 CG CD CE NZ REMARK 470 ARG J 55 CG CD NE CZ NH1 NH2 REMARK 470 LYS J 67 CG CD CE NZ REMARK 470 GLU J 68 CG CD OE1 OE2 REMARK 470 LYS J 70 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ARG B 61 N ARG J 61 4435 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO C 63 CD PRO C 63 N 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA L 39 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 47 -75.15 -103.50 REMARK 500 ASN A 53 79.82 -114.91 REMARK 500 ASN A 75 73.35 52.58 REMARK 500 ASN B 2 -167.54 -120.81 REMARK 500 GLU C 15 53.88 39.41 REMARK 500 ASN D 2 -164.67 -113.70 REMARK 500 ALA D 74 -156.62 -156.08 REMARK 500 VAL D 76 135.36 -171.14 REMARK 500 ASN F 62 105.40 -59.98 REMARK 500 THR F 65 -62.08 -131.10 REMARK 500 GLU F 68 146.98 50.21 REMARK 500 ALA F 73 86.87 59.41 REMARK 500 PHE G 47 -69.51 -103.71 REMARK 500 ASN H 2 -160.72 -111.88 REMARK 500 ASN J 2 -161.19 -119.36 REMARK 500 REMARK 500 REMARK: NULL DBREF 6O8Q A 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6O8Q B 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6O8Q C 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6O8Q D 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6O8Q E 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6O8Q F 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6O8Q G 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6O8Q H 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6O8Q I 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6O8Q J 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6O8Q K 1 57 PDB 6O8Q 6O8Q 1 57 DBREF 6O8Q L 1 57 PDB 6O8Q 6O8Q 1 57 SEQADV 6O8Q GLY A 0 UNP P0ACF0 EXPRESSION TAG SEQADV 6O8Q GLY B 0 UNP P0ACF0 EXPRESSION TAG SEQADV 6O8Q GLY C 0 UNP P0ACF0 EXPRESSION TAG SEQADV 6O8Q GLY D 0 UNP P0ACF0 EXPRESSION TAG SEQADV 6O8Q GLY E 0 UNP P0ACF0 EXPRESSION TAG SEQADV 6O8Q GLY F 0 UNP P0ACF0 EXPRESSION TAG SEQADV 6O8Q GLY G 0 UNP P0ACF0 EXPRESSION TAG SEQADV 6O8Q GLY H 0 UNP P0ACF0 EXPRESSION TAG SEQADV 6O8Q GLY I 0 UNP P0ACF0 EXPRESSION TAG SEQADV 6O8Q GLY J 0 UNP P0ACF0 EXPRESSION TAG SEQRES 1 A 91 GLY MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU SEQRES 2 A 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU SEQRES 3 A 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS GLU SEQRES 4 A 91 GLY ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS SEQRES 5 A 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN SEQRES 6 A 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO SEQRES 7 A 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 B 91 GLY MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU SEQRES 2 B 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU SEQRES 3 B 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS GLU SEQRES 4 B 91 GLY ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS SEQRES 5 B 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN SEQRES 6 B 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO SEQRES 7 B 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 C 91 GLY MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU SEQRES 2 C 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU SEQRES 3 C 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS GLU SEQRES 4 C 91 GLY ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS SEQRES 5 C 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN SEQRES 6 C 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO SEQRES 7 C 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 D 91 GLY MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU SEQRES 2 D 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU SEQRES 3 D 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS GLU SEQRES 4 D 91 GLY ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS SEQRES 5 D 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN SEQRES 6 D 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO SEQRES 7 D 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 E 91 GLY MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU SEQRES 2 E 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU SEQRES 3 E 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS GLU SEQRES 4 E 91 GLY ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS SEQRES 5 E 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN SEQRES 6 E 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO SEQRES 7 E 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 F 91 GLY MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU SEQRES 2 F 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU SEQRES 3 F 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS GLU SEQRES 4 F 91 GLY ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS SEQRES 5 F 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN SEQRES 6 F 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO SEQRES 7 F 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 G 91 GLY MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU SEQRES 2 G 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU SEQRES 3 G 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS GLU SEQRES 4 G 91 GLY ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS SEQRES 5 G 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN SEQRES 6 G 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO SEQRES 7 G 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 H 91 GLY MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU SEQRES 2 H 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU SEQRES 3 H 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS GLU SEQRES 4 H 91 GLY ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS SEQRES 5 H 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN SEQRES 6 H 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO SEQRES 7 H 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 I 91 GLY MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU SEQRES 2 I 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU SEQRES 3 I 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS GLU SEQRES 4 I 91 GLY ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS SEQRES 5 I 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN SEQRES 6 I 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO SEQRES 7 I 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 J 91 GLY MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU SEQRES 2 J 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU SEQRES 3 J 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS GLU SEQRES 4 J 91 GLY ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS SEQRES 5 J 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN SEQRES 6 J 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO SEQRES 7 J 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 K 57 DA DA DC DC DC DT DT DA DG DA DA DA DA SEQRES 2 K 57 DT DT DT DT DA DT DT DT DA DT DA DT DA SEQRES 3 K 57 DA DT DT DA DC DA DA DA DA DT DA DT DT SEQRES 4 K 57 DA DA DA DA DC DC DA DC DA DA DT DT DA SEQRES 5 K 57 DA DA DA DT DT SEQRES 1 L 57 DA DA DT DT DT DC DA DA DT DT DA DT DC SEQRES 2 L 57 DC DC DC DT DT DA DA DA DA DT DT DT DT SEQRES 3 L 57 DA DT DA DA DC DC DA DT DA DT DA DA DA SEQRES 4 L 57 DT DA DA DA DA DA DT DA DT DC DT DA DA SEQRES 5 L 57 DC DC DC DC DC HELIX 1 AA1 ASN A 2 GLU A 15 1 14 HELIX 2 AA2 SER A 17 GLU A 38 1 22 HELIX 3 AA3 GLY A 82 LYS A 90 1 9 HELIX 4 AA4 ASN B 2 GLU B 15 1 14 HELIX 5 AA5 THR B 19 GLY B 39 1 21 HELIX 6 AA6 GLY B 82 LYS B 90 1 9 HELIX 7 AA7 LYS C 3 GLU C 15 1 13 HELIX 8 AA8 SER C 17 GLU C 38 1 22 HELIX 9 AA9 GLY C 82 VAL C 89 1 8 HELIX 10 AB1 ASN D 2 ALA D 14 1 13 HELIX 11 AB2 SER D 17 GLY D 39 1 23 HELIX 12 AB3 GLY D 82 LYS D 90 1 9 HELIX 13 AB4 ASN E 2 GLU E 15 1 14 HELIX 14 AB5 SER E 17 GLY E 39 1 23 HELIX 15 AB6 GLY E 82 LYS E 90 1 9 HELIX 16 AB7 ASN F 2 GLU F 15 1 14 HELIX 17 AB8 SER F 17 GLY F 39 1 23 HELIX 18 AB9 GLY F 82 LYS F 90 1 9 HELIX 19 AC1 ASN G 2 GLU G 15 1 14 HELIX 20 AC2 SER G 17 GLU G 38 1 22 HELIX 21 AC3 GLY G 82 VAL G 89 1 8 HELIX 22 AC4 ASN H 2 GLU H 15 1 14 HELIX 23 AC5 SER H 17 GLY H 39 1 23 HELIX 24 AC6 GLY H 82 LYS H 90 1 9 HELIX 25 AC7 ASN I 2 GLU I 15 1 14 HELIX 26 AC8 SER I 17 GLU I 38 1 22 HELIX 27 AC9 GLY I 82 LYS I 90 1 9 HELIX 28 AD1 ASN J 2 ALA J 14 1 13 HELIX 29 AD2 SER J 17 GLY J 39 1 23 HELIX 30 AD3 GLY J 82 VAL J 89 1 8 SHEET 1 AA1 3 VAL A 42 LEU A 44 0 SHEET 2 AA1 3 GLY A 48 ASN A 53 -1 O GLY A 48 N LEU A 44 SHEET 3 AA1 3 VAL A 76 SER A 81 -1 O VAL A 76 N ASN A 53 SHEET 1 AA2 3 VAL B 42 LEU B 44 0 SHEET 2 AA2 3 GLY B 48 ARG B 55 -1 O PHE B 50 N VAL B 42 SHEET 3 AA2 3 ALA B 74 SER B 81 -1 O ALA B 74 N ARG B 55 SHEET 1 AA3 2 THR B 59 ASN B 62 0 SHEET 2 AA3 2 LYS B 67 LYS B 70 -1 O ILE B 69 N GLY B 60 SHEET 1 AA4 4 MET C 1 ASN C 2 0 SHEET 2 AA4 4 VAL D 42 LEU D 44 1 O GLN D 43 N MET C 1 SHEET 3 AA4 4 GLY D 48 HIS D 54 -1 O GLY D 48 N LEU D 44 SHEET 4 AA4 4 ASN D 75 SER D 81 -1 O ALA D 78 N LYS D 51 SHEET 1 AA5 3 VAL C 42 LEU C 44 0 SHEET 2 AA5 3 GLY C 48 ARG C 55 -1 O GLY C 48 N LEU C 44 SHEET 3 AA5 3 ALA C 74 SER C 81 -1 O VAL C 76 N ASN C 53 SHEET 1 AA6 3 VAL E 42 LEU E 44 0 SHEET 2 AA6 3 GLY E 48 ASN E 53 -1 O GLY E 48 N LEU E 44 SHEET 3 AA6 3 VAL E 76 SER E 81 -1 O ALA E 78 N LYS E 51 SHEET 1 AA7 3 VAL F 42 LEU F 44 0 SHEET 2 AA7 3 GLY F 48 LYS F 51 -1 O GLY F 48 N LEU F 44 SHEET 3 AA7 3 ALA F 78 SER F 81 -1 O ALA F 78 N LYS F 51 SHEET 1 AA8 2 THR F 59 GLY F 60 0 SHEET 2 AA8 2 ILE F 69 LYS F 70 -1 O ILE F 69 N GLY F 60 SHEET 1 AA9 3 VAL G 42 LEU G 44 0 SHEET 2 AA9 3 GLY G 48 HIS G 54 -1 O GLY G 48 N LEU G 44 SHEET 3 AA9 3 ASN G 75 SER G 81 -1 O VAL G 76 N ASN G 53 SHEET 1 AB1 2 ARG G 58 ARG G 61 0 SHEET 2 AB1 2 GLU G 68 ILE G 71 -1 O ILE G 69 N GLY G 60 SHEET 1 AB2 3 VAL H 42 LEU H 44 0 SHEET 2 AB2 3 GLY H 48 ARG H 55 -1 O GLY H 48 N LEU H 44 SHEET 3 AB2 3 ALA H 74 SER H 81 -1 O VAL H 76 N ASN H 53 SHEET 1 AB3 2 THR H 59 ARG H 61 0 SHEET 2 AB3 2 GLU H 68 LYS H 70 -1 O ILE H 69 N GLY H 60 SHEET 1 AB4 3 VAL I 42 LEU I 44 0 SHEET 2 AB4 3 GLY I 48 HIS I 54 -1 O GLY I 48 N LEU I 44 SHEET 3 AB4 3 ASN I 75 SER I 81 -1 O VAL I 76 N ASN I 53 SHEET 1 AB5 3 VAL J 42 LEU J 44 0 SHEET 2 AB5 3 GLY J 48 HIS J 54 -1 O GLY J 48 N LEU J 44 SHEET 3 AB5 3 ASN J 75 SER J 81 -1 O VAL J 76 N ASN J 53 SHEET 1 AB6 2 THR J 59 ARG J 61 0 SHEET 2 AB6 2 GLU J 68 LYS J 70 -1 O ILE J 69 N GLY J 60 CRYST1 59.411 61.151 351.203 90.00 90.00 90.00 P 21 21 21 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002847 0.00000