HEADER SIGNALING PROTEIN 15-MAR-19 6O9W TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS BLAR1 ANTIBIOTIC-SENSOR TITLE 2 DOMAIN IN COMPLEX WITH AVIBACTAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN BLAR1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: BLAR1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BETA-LACTAM ANTIBIOTIC SENSOR DOMAIN, ANTIBIOTIC COMPLEX, PENICILLIN KEYWDS 2 BINDING PROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.A.N.ALEXANDER,N.C.J.STRYNADKA REVDAT 4 16-OCT-24 6O9W 1 REMARK REVDAT 3 11-OCT-23 6O9W 1 REMARK REVDAT 2 07-OCT-20 6O9W 1 JRNL REVDAT 1 10-JUN-20 6O9W 0 JRNL AUTH J.A.N.ALEXANDER,M.RADAEVA,D.T.KING,H.F.CHAMBERS,A.CHERKASOV, JRNL AUTH 2 S.S.CHATTERJEE,N.C.J.STRYNADKA JRNL TITL STRUCTURAL ANALYSIS OF AVIBACTAM-MEDIATED ACTIVATION OF THE JRNL TITL 2 BLA AND MEC DIVERGONS IN METHICILLIN-RESISTANT JRNL TITL 3 STAPHYLOCOCCUS AUREUS . JRNL REF J.BIOL.CHEM. V. 295 10870 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32518158 JRNL DOI 10.1074/JBC.RA120.013029 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 38592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 1823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3366 - 4.5838 0.99 2897 126 0.1769 0.2200 REMARK 3 2 4.5838 - 3.6387 1.00 2863 127 0.1441 0.1788 REMARK 3 3 3.6387 - 3.1789 0.99 2819 141 0.1600 0.2064 REMARK 3 4 3.1789 - 2.8883 1.00 2837 143 0.1724 0.2195 REMARK 3 5 2.8883 - 2.6813 1.00 2833 136 0.1703 0.2059 REMARK 3 6 2.6813 - 2.5232 1.00 2849 134 0.1792 0.1985 REMARK 3 7 2.5232 - 2.3969 1.00 2814 147 0.1927 0.2377 REMARK 3 8 2.3969 - 2.2925 1.00 2823 150 0.2048 0.2202 REMARK 3 9 2.2925 - 2.2043 0.99 2809 142 0.2266 0.2788 REMARK 3 10 2.2043 - 2.1282 1.00 2814 147 0.2376 0.2667 REMARK 3 11 2.1282 - 2.0617 0.99 2816 144 0.2620 0.2937 REMARK 3 12 2.0617 - 2.0027 1.00 2802 152 0.2910 0.3205 REMARK 3 13 2.0027 - 1.9500 0.99 2793 134 0.3223 0.3856 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 337:379) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5467 -6.2616 24.3123 REMARK 3 T TENSOR REMARK 3 T11: 0.3071 T22: 0.1863 REMARK 3 T33: 0.3246 T12: 0.0097 REMARK 3 T13: -0.0234 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 3.9418 L22: 3.1373 REMARK 3 L33: 4.1687 L12: -0.7080 REMARK 3 L13: 1.7419 L23: -0.6780 REMARK 3 S TENSOR REMARK 3 S11: -0.1355 S12: -0.1889 S13: 0.5015 REMARK 3 S21: 0.1889 S22: 0.0072 S23: 0.0628 REMARK 3 S31: -0.2686 S32: -0.1915 S33: 0.1798 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 380:404) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8569 -25.3815 26.7838 REMARK 3 T TENSOR REMARK 3 T11: 0.2678 T22: 0.2101 REMARK 3 T33: 0.2166 T12: -0.0372 REMARK 3 T13: -0.0446 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 3.6413 L22: 4.4830 REMARK 3 L33: 2.0486 L12: -1.0944 REMARK 3 L13: 0.1039 L23: 0.1523 REMARK 3 S TENSOR REMARK 3 S11: 0.3208 S12: -0.1140 S13: -0.2157 REMARK 3 S21: -0.1724 S22: -0.2030 S23: 0.2418 REMARK 3 S31: 0.2550 S32: -0.0825 S33: -0.1034 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 405:439) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2441 -35.8409 17.5654 REMARK 3 T TENSOR REMARK 3 T11: 0.4152 T22: 0.2993 REMARK 3 T33: 0.3252 T12: 0.0837 REMARK 3 T13: -0.0548 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 8.1604 L22: 8.1540 REMARK 3 L33: 2.8241 L12: 4.8607 REMARK 3 L13: -2.7854 L23: 1.4614 REMARK 3 S TENSOR REMARK 3 S11: -0.4103 S12: 0.1512 S13: -0.4982 REMARK 3 S21: -0.4733 S22: 0.3863 S23: -0.2024 REMARK 3 S31: 0.0987 S32: 0.2117 S33: 0.0042 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 440:572) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1806 -23.1783 23.4540 REMARK 3 T TENSOR REMARK 3 T11: 0.2934 T22: 0.2252 REMARK 3 T33: 0.2736 T12: 0.0005 REMARK 3 T13: -0.0584 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.4200 L22: 1.0306 REMARK 3 L33: 1.2960 L12: 0.3016 REMARK 3 L13: 0.0730 L23: 0.0912 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: -0.0287 S13: -0.0398 REMARK 3 S21: 0.0392 S22: 0.0034 S23: 0.0565 REMARK 3 S31: 0.1151 S32: -0.0722 S33: -0.0444 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 573:583) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7892 -9.0735 12.0790 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.2977 REMARK 3 T33: 0.3426 T12: -0.0451 REMARK 3 T13: 0.0431 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.1252 L22: 8.8385 REMARK 3 L33: 8.0369 L12: 2.5414 REMARK 3 L13: 2.1015 L23: 2.0599 REMARK 3 S TENSOR REMARK 3 S11: 0.1006 S12: 0.3438 S13: -0.1226 REMARK 3 S21: -0.6158 S22: 0.1579 S23: -0.8099 REMARK 3 S31: -0.1039 S32: 0.5307 S33: -0.2363 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 337:347) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9671 -46.6829 -7.9664 REMARK 3 T TENSOR REMARK 3 T11: 0.5302 T22: 0.4544 REMARK 3 T33: 0.4563 T12: 0.1155 REMARK 3 T13: -0.0267 T23: -0.1395 REMARK 3 L TENSOR REMARK 3 L11: 3.2986 L22: 6.3891 REMARK 3 L33: 7.6710 L12: -0.6082 REMARK 3 L13: 5.0390 L23: -0.7324 REMARK 3 S TENSOR REMARK 3 S11: 0.4308 S12: 1.2160 S13: -1.0605 REMARK 3 S21: -0.6177 S22: -0.3647 S23: 0.4387 REMARK 3 S31: 0.5120 S32: 0.1215 S33: -0.1387 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 348:405) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9860 -37.1569 0.3730 REMARK 3 T TENSOR REMARK 3 T11: 0.2602 T22: 0.2056 REMARK 3 T33: 0.2578 T12: 0.0249 REMARK 3 T13: -0.0199 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 2.0645 L22: 1.6010 REMARK 3 L33: 3.4082 L12: 0.4283 REMARK 3 L13: 0.9458 L23: -1.5583 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.1988 S13: -0.1356 REMARK 3 S21: -0.1066 S22: -0.0341 S23: 0.0091 REMARK 3 S31: 0.0025 S32: 0.0732 S33: 0.0237 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 406:427) REMARK 3 ORIGIN FOR THE GROUP (A): -34.8040 -30.6384 30.2887 REMARK 3 T TENSOR REMARK 3 T11: 0.8895 T22: 1.0493 REMARK 3 T33: 0.8130 T12: 0.0177 REMARK 3 T13: -0.0935 T23: -0.1710 REMARK 3 L TENSOR REMARK 3 L11: 3.0833 L22: 1.5855 REMARK 3 L33: 1.1874 L12: 2.2210 REMARK 3 L13: -1.7872 L23: -1.3798 REMARK 3 S TENSOR REMARK 3 S11: 0.1581 S12: -0.6320 S13: 0.0475 REMARK 3 S21: -0.5588 S22: -0.5934 S23: 0.1904 REMARK 3 S31: 0.1073 S32: -0.0316 S33: 0.3735 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 428:525) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7638 -40.3569 12.4523 REMARK 3 T TENSOR REMARK 3 T11: 0.2379 T22: 0.2173 REMARK 3 T33: 0.2596 T12: -0.0350 REMARK 3 T13: -0.0252 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.0880 L22: 1.8267 REMARK 3 L33: 2.7417 L12: -0.7257 REMARK 3 L13: 1.0147 L23: -0.0061 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: -0.1834 S13: -0.1187 REMARK 3 S21: 0.1251 S22: -0.0312 S23: 0.0649 REMARK 3 S31: 0.1317 S32: -0.1284 S33: -0.0715 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 526:583) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9551 -28.8499 1.3527 REMARK 3 T TENSOR REMARK 3 T11: 0.2802 T22: 0.2113 REMARK 3 T33: 0.2488 T12: 0.0196 REMARK 3 T13: -0.0468 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 5.2211 L22: 3.0478 REMARK 3 L33: 1.9084 L12: 1.7823 REMARK 3 L13: 0.9538 L23: 1.0485 REMARK 3 S TENSOR REMARK 3 S11: -0.0670 S12: 0.0641 S13: 0.0582 REMARK 3 S21: -0.0765 S22: -0.0700 S23: 0.1751 REMARK 3 S31: -0.2028 S32: -0.0145 S33: 0.1709 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 337 THROUGH 583) REMARK 3 SELECTION : (CHAIN B AND (RESID 337 THROUGH 407 OR REMARK 3 RESID 428 THROUGH 583)) REMARK 3 ATOM PAIRS NUMBER : 1358 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38646 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 46.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.98400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 1XA1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM TRI-POTASSIUM CITRATE, 20% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.32350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 327 REMARK 465 SER A 328 REMARK 465 HIS A 329 REMARK 465 MET A 330 REMARK 465 GLY A 331 REMARK 465 GLN A 332 REMARK 465 SER A 333 REMARK 465 ILE A 334 REMARK 465 THR A 335 REMARK 465 ASP A 336 REMARK 465 GLU A 408 REMARK 465 ASN A 409 REMARK 465 SER A 410 REMARK 465 ARG A 411 REMARK 465 MET A 412 REMARK 465 SER A 413 REMARK 465 TRP A 414 REMARK 465 ASN A 415 REMARK 465 HIS A 416 REMARK 465 LYS A 417 REMARK 465 HIS A 418 REMARK 465 TYR A 419 REMARK 465 PRO A 420 REMARK 465 PHE A 421 REMARK 465 ASP A 422 REMARK 465 ALA A 423 REMARK 465 TRP A 424 REMARK 465 ASN A 425 REMARK 465 LYS A 426 REMARK 465 GLU A 427 REMARK 465 GLY A 584 REMARK 465 GLN A 585 REMARK 465 GLY B 327 REMARK 465 SER B 328 REMARK 465 HIS B 329 REMARK 465 MET B 330 REMARK 465 GLY B 331 REMARK 465 GLN B 332 REMARK 465 SER B 333 REMARK 465 ILE B 334 REMARK 465 THR B 335 REMARK 465 ASP B 336 REMARK 465 SER B 413 REMARK 465 TRP B 414 REMARK 465 GLY B 584 REMARK 465 GLN B 585 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 439 O HOH A 702 1.43 REMARK 500 HE22 GLN B 348 O HOH B 702 1.48 REMARK 500 HZ1 LYS A 341 O HOH A 704 1.57 REMARK 500 OD1 ASN B 538 HE2 HIS B 557 1.58 REMARK 500 OG SER B 389 N NXL B 601 2.10 REMARK 500 OG SER A 473 OE1 GLU B 443 2.13 REMARK 500 OG SER A 389 N NXL A 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 365 CG - SD - CE ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 377 70.06 67.38 REMARK 500 ASN A 388 -138.09 50.76 REMARK 500 ASP A 478 -132.23 -137.45 REMARK 500 ASN A 538 114.33 -167.62 REMARK 500 ASN B 377 69.10 67.08 REMARK 500 ASN B 388 -139.17 50.55 REMARK 500 ASN B 425 53.62 -108.43 REMARK 500 ASP B 478 -130.48 -140.01 REMARK 500 ASN B 499 -157.43 -124.62 REMARK 500 ASN B 538 113.30 -166.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NXL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide NXL B 601 and SER B REMARK 800 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide NXL B 601 and SER B REMARK 800 389 DBREF 6O9W A 330 585 UNP P18357 BLAR_STAAU 330 585 DBREF 6O9W B 330 585 UNP P18357 BLAR_STAAU 330 585 SEQADV 6O9W GLY A 327 UNP P18357 EXPRESSION TAG SEQADV 6O9W SER A 328 UNP P18357 EXPRESSION TAG SEQADV 6O9W HIS A 329 UNP P18357 EXPRESSION TAG SEQADV 6O9W GLY B 327 UNP P18357 EXPRESSION TAG SEQADV 6O9W SER B 328 UNP P18357 EXPRESSION TAG SEQADV 6O9W HIS B 329 UNP P18357 EXPRESSION TAG SEQRES 1 A 259 GLY SER HIS MET GLY GLN SER ILE THR ASP TYR ASN TYR SEQRES 2 A 259 LYS LYS PRO LEU HIS ASN ASP TYR GLN ILE LEU ASP LYS SEQRES 3 A 259 SER LYS ILE PHE GLY SER ASN SER GLY SER PHE VAL MET SEQRES 4 A 259 TYR SER MET LYS LYS ASP LYS TYR TYR ILE TYR ASN GLU SEQRES 5 A 259 LYS GLU SER ARG LYS ARG TYR SER PRO ASN SER THR TYR SEQRES 6 A 259 LYS ILE TYR LEU ALA MET PHE GLY LEU ASP ARG HIS ILE SEQRES 7 A 259 ILE ASN ASP GLU ASN SER ARG MET SER TRP ASN HIS LYS SEQRES 8 A 259 HIS TYR PRO PHE ASP ALA TRP ASN LYS GLU GLN ASP LEU SEQRES 9 A 259 ASN THR ALA MET GLN ASN SER VAL ASN TRP TYR PHE GLU SEQRES 10 A 259 ARG ILE SER ASP GLN ILE PRO LYS ASN TYR THR ALA THR SEQRES 11 A 259 GLN LEU LYS GLN LEU ASN TYR GLY ASN LYS ASN LEU GLY SEQRES 12 A 259 SER TYR LYS SER TYR TRP MET GLU ASP SER LEU LYS ILE SEQRES 13 A 259 SER ASN LEU GLU GLN VAL ILE VAL PHE LYS ASN MET MET SEQRES 14 A 259 GLU GLN ASN ASN HIS PHE SER LYS LYS ALA LYS ASN GLN SEQRES 15 A 259 LEU SER SER SER LEU LEU ILE LYS LYS ASN GLU LYS TYR SEQRES 16 A 259 GLU LEU TYR GLY LYS THR GLY THR GLY ILE VAL ASN GLY SEQRES 17 A 259 LYS TYR ASN ASN GLY TRP PHE VAL GLY TYR VAL ILE THR SEQRES 18 A 259 ASN HIS ASP LYS TYR TYR PHE ALA THR HIS LEU SER ASP SEQRES 19 A 259 GLY LYS PRO SER GLY LYS ASN ALA GLU LEU ILE SER GLU SEQRES 20 A 259 LYS ILE LEU LYS GLU MET GLY VAL LEU ASN GLY GLN SEQRES 1 B 259 GLY SER HIS MET GLY GLN SER ILE THR ASP TYR ASN TYR SEQRES 2 B 259 LYS LYS PRO LEU HIS ASN ASP TYR GLN ILE LEU ASP LYS SEQRES 3 B 259 SER LYS ILE PHE GLY SER ASN SER GLY SER PHE VAL MET SEQRES 4 B 259 TYR SER MET LYS LYS ASP LYS TYR TYR ILE TYR ASN GLU SEQRES 5 B 259 LYS GLU SER ARG LYS ARG TYR SER PRO ASN SER THR TYR SEQRES 6 B 259 LYS ILE TYR LEU ALA MET PHE GLY LEU ASP ARG HIS ILE SEQRES 7 B 259 ILE ASN ASP GLU ASN SER ARG MET SER TRP ASN HIS LYS SEQRES 8 B 259 HIS TYR PRO PHE ASP ALA TRP ASN LYS GLU GLN ASP LEU SEQRES 9 B 259 ASN THR ALA MET GLN ASN SER VAL ASN TRP TYR PHE GLU SEQRES 10 B 259 ARG ILE SER ASP GLN ILE PRO LYS ASN TYR THR ALA THR SEQRES 11 B 259 GLN LEU LYS GLN LEU ASN TYR GLY ASN LYS ASN LEU GLY SEQRES 12 B 259 SER TYR LYS SER TYR TRP MET GLU ASP SER LEU LYS ILE SEQRES 13 B 259 SER ASN LEU GLU GLN VAL ILE VAL PHE LYS ASN MET MET SEQRES 14 B 259 GLU GLN ASN ASN HIS PHE SER LYS LYS ALA LYS ASN GLN SEQRES 15 B 259 LEU SER SER SER LEU LEU ILE LYS LYS ASN GLU LYS TYR SEQRES 16 B 259 GLU LEU TYR GLY LYS THR GLY THR GLY ILE VAL ASN GLY SEQRES 17 B 259 LYS TYR ASN ASN GLY TRP PHE VAL GLY TYR VAL ILE THR SEQRES 18 B 259 ASN HIS ASP LYS TYR TYR PHE ALA THR HIS LEU SER ASP SEQRES 19 B 259 GLY LYS PRO SER GLY LYS ASN ALA GLU LEU ILE SER GLU SEQRES 20 B 259 LYS ILE LEU LYS GLU MET GLY VAL LEU ASN GLY GLN HET NXL A 601 56 HET NXL B 601 56 HETNAM NXL (2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2- HETNAM 2 NXL CARBOXAMIDE HETSYN NXL AVIBACTAM, BOUND FORM; NXL104, BOUND FORM FORMUL 3 NXL 2(C7 H13 N3 O6 S) FORMUL 5 HOH *167(H2 O) HELIX 1 AA1 LYS A 352 GLY A 357 1 6 HELIX 2 AA2 ASN A 377 ARG A 382 1 6 HELIX 3 AA3 PRO A 387 THR A 390 5 4 HELIX 4 AA4 TYR A 391 ARG A 402 1 12 HELIX 5 AA5 ASP A 429 ASN A 436 1 8 HELIX 6 AA6 VAL A 438 GLN A 448 1 11 HELIX 7 AA7 PRO A 450 ASN A 462 1 13 HELIX 8 AA8 ASN A 484 GLN A 497 1 14 HELIX 9 AA9 SER A 502 LEU A 513 1 12 HELIX 10 AB1 SER A 564 MET A 579 1 16 HELIX 11 AB2 LYS B 352 GLY B 357 1 6 HELIX 12 AB3 ASN B 377 ARG B 382 1 6 HELIX 13 AB4 PRO B 387 THR B 390 5 4 HELIX 14 AB5 TYR B 391 ARG B 402 1 12 HELIX 15 AB6 ASP B 429 SER B 437 1 9 HELIX 16 AB7 VAL B 438 GLN B 448 1 11 HELIX 17 AB8 PRO B 450 ASN B 462 1 13 HELIX 18 AB9 ASN B 484 GLN B 497 1 14 HELIX 19 AC1 SER B 502 LEU B 513 1 12 HELIX 20 AC2 SER B 564 MET B 579 1 16 SHEET 1 AA1 7 GLN A 348 LEU A 350 0 SHEET 2 AA1 7 LYS A 372 TYR A 376 1 O ILE A 375 N LEU A 350 SHEET 3 AA1 7 SER A 360 SER A 367 -1 N PHE A 363 O TYR A 376 SHEET 4 AA1 7 LYS A 551 ASP A 560 -1 O SER A 559 N SER A 360 SHEET 5 AA1 7 LYS A 535 THR A 547 -1 N GLY A 539 O LEU A 558 SHEET 6 AA1 7 TYR A 521 VAL A 532 -1 N GLY A 530 O ASN A 538 SHEET 7 AA1 7 LEU A 514 LYS A 517 -1 N ILE A 515 O LEU A 523 SHEET 1 AA2 2 ARG A 384 TYR A 385 0 SHEET 2 AA2 2 ILE A 482 SER A 483 -1 O ILE A 482 N TYR A 385 SHEET 1 AA3 7 GLN B 348 ILE B 349 0 SHEET 2 AA3 7 LYS B 372 TYR B 376 1 O ILE B 375 N GLN B 348 SHEET 3 AA3 7 SER B 360 SER B 367 -1 N PHE B 363 O TYR B 376 SHEET 4 AA3 7 LYS B 551 ASP B 560 -1 O SER B 559 N SER B 360 SHEET 5 AA3 7 LYS B 535 THR B 547 -1 N VAL B 545 O TYR B 552 SHEET 6 AA3 7 TYR B 521 VAL B 532 -1 N GLY B 530 O ASN B 538 SHEET 7 AA3 7 LEU B 514 LYS B 517 -1 N ILE B 515 O LEU B 523 SHEET 1 AA4 2 ARG B 384 TYR B 385 0 SHEET 2 AA4 2 ILE B 482 SER B 483 -1 O ILE B 482 N TYR B 385 LINK OG SER A 389 CANANXL A 601 1555 1555 1.35 LINK OG SER A 389 CANBNXL A 601 1555 1555 1.42 LINK OG SER B 389 CANANXL B 601 1555 1555 1.23 LINK OG SER B 389 CANBNXL B 601 1555 1555 1.29 CISPEP 1 TYR B 419 PRO B 420 0 1.64 SITE 1 AC1 18 ASN A 388 SER A 389 LYS A 392 SER A 437 SITE 2 AC1 18 ASN A 439 MET A 476 GLU A 477 LYS A 526 SITE 3 AC1 18 THR A 527 GLY A 528 THR A 529 GLY A 530 SITE 4 AC1 18 ILE A 531 HOH A 710 ILE B 531 ASN B 533 SITE 5 AC1 18 GLY B 534 NXL B 601 SITE 1 AC2 19 ILE A 531 GLY A 534 NXL A 601 HOH A 710 SITE 2 AC2 19 PRO B 387 ASN B 388 THR B 390 TYR B 391 SITE 3 AC2 19 LYS B 392 SER B 437 ASN B 439 MET B 476 SITE 4 AC2 19 GLU B 477 LYS B 526 THR B 527 GLY B 528 SITE 5 AC2 19 THR B 529 GLY B 530 ILE B 531 SITE 1 AC3 19 ILE A 531 GLY A 534 NXL A 601 HOH A 710 SITE 2 AC3 19 PRO B 387 ASN B 388 THR B 390 TYR B 391 SITE 3 AC3 19 LYS B 392 SER B 437 ASN B 439 MET B 476 SITE 4 AC3 19 GLU B 477 LYS B 526 THR B 527 GLY B 528 SITE 5 AC3 19 THR B 529 GLY B 530 ILE B 531 CRYST1 53.355 92.647 56.472 90.00 104.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018742 0.000000 0.004872 0.00000 SCALE2 0.000000 0.010794 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018296 0.00000