HEADER TRANSFERASE/TRANSFERASE INHIBITOR 16-MAR-19 6OAG TITLE CRYSTAL STRUCTURE OF HUMAN FPPS IN COMPLEX WITH AN ALLOSTERIC TITLE 2 INHIBITOR YF-02-82 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: RESIDUES 67-419; COMPND 5 SYNONYM: FPS,(2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE,FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10,2.5.1.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.PARK,A.M.BERGHUIS REVDAT 4 11-OCT-23 6OAG 1 REMARK REVDAT 3 08-JAN-20 6OAG 1 REMARK REVDAT 2 27-NOV-19 6OAG 1 JRNL REVDAT 1 06-NOV-19 6OAG 0 JRNL AUTH Y.FENG,J.PARK,S.G.LI,R.BOUTIN,P.VIERECK,M.A.SCHILLING, JRNL AUTH 2 A.M.BERGHUIS,Y.S.TSANTRIZOS JRNL TITL CHIRALITY-DRIVEN MODE OF BINDING OF ALPHA-AMINOPHOSPHONIC JRNL TITL 2 ACID-BASED ALLOSTERIC INHIBITORS OF THE HUMAN FARNESYL JRNL TITL 3 PYROPHOSPHATE SYNTHASE (HFPPS). JRNL REF J.MED.CHEM. V. 62 9691 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31577901 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01104 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1047 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1495 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2700 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.41000 REMARK 3 B22 (A**2) : -4.41000 REMARK 3 B33 (A**2) : 8.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.253 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.268 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.224 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2858 ; 0.018 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2564 ; 0.012 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3896 ; 1.685 ; 1.672 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5914 ; 1.422 ; 1.590 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 346 ; 6.800 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;34.838 ;23.129 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 452 ;16.492 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.800 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3219 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 621 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1381 ; 2.251 ; 4.937 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1380 ; 2.251 ; 4.936 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1728 ; 3.473 ; 7.407 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1729 ; 3.472 ; 7.407 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1476 ; 2.621 ; 5.511 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1469 ; 2.607 ; 5.499 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2156 ; 4.180 ; 8.170 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3393 ;10.009 ;61.376 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3370 ; 9.933 ;61.056 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 8 F 36 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1554 82.9258 8.8260 REMARK 3 T TENSOR REMARK 3 T11: 0.2918 T22: 0.4869 REMARK 3 T33: 0.5893 T12: -0.1406 REMARK 3 T13: -0.2496 T23: -0.1030 REMARK 3 L TENSOR REMARK 3 L11: 8.7286 L22: 7.2428 REMARK 3 L33: 10.3963 L12: 1.1918 REMARK 3 L13: -2.4889 L23: 1.1620 REMARK 3 S TENSOR REMARK 3 S11: -0.4759 S12: 1.5005 S13: -0.1282 REMARK 3 S21: -0.9297 S22: 0.5497 S23: 0.7066 REMARK 3 S31: 0.6930 S32: -1.5370 S33: -0.0739 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 37 F 71 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4939 82.3832 13.4444 REMARK 3 T TENSOR REMARK 3 T11: 0.1535 T22: 0.1573 REMARK 3 T33: 0.2558 T12: -0.0882 REMARK 3 T13: -0.1278 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 7.1447 L22: 4.0043 REMARK 3 L33: 5.4225 L12: -0.0522 REMARK 3 L13: -5.4954 L23: 0.6113 REMARK 3 S TENSOR REMARK 3 S11: -0.2442 S12: 0.7242 S13: -0.4154 REMARK 3 S21: -0.6516 S22: 0.1525 S23: 0.5112 REMARK 3 S31: 0.3009 S32: -0.7371 S33: 0.0917 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 72 F 178 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7624 86.5262 18.8642 REMARK 3 T TENSOR REMARK 3 T11: 0.0302 T22: 0.0504 REMARK 3 T33: 0.2279 T12: -0.0246 REMARK 3 T13: -0.0317 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 5.1012 L22: 3.3746 REMARK 3 L33: 2.6796 L12: -0.3060 REMARK 3 L13: -1.6289 L23: -0.4554 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: 0.0401 S13: -0.1919 REMARK 3 S21: -0.2795 S22: 0.0934 S23: 0.4132 REMARK 3 S31: 0.1738 S32: -0.3408 S33: -0.0240 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 179 F 283 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3728 78.7261 37.2330 REMARK 3 T TENSOR REMARK 3 T11: 0.1265 T22: 0.3782 REMARK 3 T33: 0.3814 T12: 0.0226 REMARK 3 T13: 0.0149 T23: 0.0824 REMARK 3 L TENSOR REMARK 3 L11: 6.1348 L22: 6.1514 REMARK 3 L33: 5.6434 L12: -2.0220 REMARK 3 L13: 0.9333 L23: -4.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.1411 S12: -0.5727 S13: -0.5226 REMARK 3 S21: 0.2177 S22: -0.3893 S23: -0.2691 REMARK 3 S31: 0.3877 S32: 0.8460 S33: 0.2482 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 284 F 300 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8885 62.6365 40.4725 REMARK 3 T TENSOR REMARK 3 T11: 0.5675 T22: 0.6612 REMARK 3 T33: 0.6229 T12: 0.1773 REMARK 3 T13: -0.0769 T23: 0.1194 REMARK 3 L TENSOR REMARK 3 L11: 3.9770 L22: 2.8562 REMARK 3 L33: 0.2202 L12: 3.3233 REMARK 3 L13: -0.8921 L23: -0.7097 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: 0.0892 S13: -0.1129 REMARK 3 S21: 0.1508 S22: 0.1095 S23: -0.1994 REMARK 3 S31: 0.0922 S32: 0.0206 S33: -0.0525 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 301 F 350 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8315 75.2466 41.1216 REMARK 3 T TENSOR REMARK 3 T11: 0.3686 T22: 0.3082 REMARK 3 T33: 0.5371 T12: -0.0036 REMARK 3 T13: 0.0641 T23: 0.1222 REMARK 3 L TENSOR REMARK 3 L11: 5.7159 L22: 6.6687 REMARK 3 L33: 3.6448 L12: -4.0097 REMARK 3 L13: 2.7997 L23: -4.3880 REMARK 3 S TENSOR REMARK 3 S11: 0.3112 S12: -0.6196 S13: -0.6887 REMARK 3 S21: 0.1369 S22: -0.0243 S23: 0.5499 REMARK 3 S31: 0.4158 S32: 0.0836 S33: -0.2869 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6OAG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 76.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 1.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0238 REMARK 200 STARTING MODEL: 4XQR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.075 M HEPES, 0.6 M POTASSIUM REMARK 280 PHOSPHATE, 0.6 M SODIUM PHOSPHATE, 25% GLYCEROL, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.43000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.67500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.21500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.67500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.64500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.67500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.67500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.21500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.67500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.67500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.64500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.43000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 111.35000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 111.35000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.43000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH F 511 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 572 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F -21 REMARK 465 GLY F -20 REMARK 465 SER F -19 REMARK 465 SER F -18 REMARK 465 HIS F -17 REMARK 465 HIS F -16 REMARK 465 HIS F -15 REMARK 465 HIS F -14 REMARK 465 HIS F -13 REMARK 465 HIS F -12 REMARK 465 SER F -11 REMARK 465 SER F -10 REMARK 465 GLY F -9 REMARK 465 ARG F -8 REMARK 465 GLU F -7 REMARK 465 ASN F -6 REMARK 465 LEU F -5 REMARK 465 TYR F -4 REMARK 465 PHE F -3 REMARK 465 GLN F -2 REMARK 465 GLY F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 ASN F 2 REMARK 465 GLY F 3 REMARK 465 ASP F 4 REMARK 465 GLN F 5 REMARK 465 ASN F 6 REMARK 465 SER F 7 REMARK 465 ARG F 351 REMARK 465 ARG F 352 REMARK 465 LYS F 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP F 8 CG OD1 OD2 REMARK 470 GLN F 12 CG CD OE1 NE2 REMARK 470 GLN F 15 CG CD OE1 NE2 REMARK 470 MET F 33 CG SD CE REMARK 470 LYS F 57 CD CE NZ REMARK 470 GLU F 73 CG CD OE1 OE2 REMARK 470 ARG F 75 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 76 NZ REMARK 470 VAL F 183 CG1 CG2 REMARK 470 LYS F 191 CG CD CE NZ REMARK 470 LYS F 223 CE NZ REMARK 470 LYS F 257 CG CD CE NZ REMARK 470 GLU F 281 CG CD OE1 OE2 REMARK 470 LYS F 287 CG CD CE NZ REMARK 470 GLU F 288 CG CD OE1 OE2 REMARK 470 GLN F 292 CG CD OE1 NE2 REMARK 470 LYS F 297 CG CD CE NZ REMARK 470 ARG F 300 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 307 CD OE1 OE2 REMARK 470 LYS F 347 NZ REMARK 470 LYS F 350 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 PO4 F 403 O HOH F 501 2.09 REMARK 500 O HOH F 548 O HOH F 584 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA F 11 C ALA F 11 O 0.123 REMARK 500 GLU F 13 CD GLU F 13 OE1 0.151 REMARK 500 GLU F 13 CD GLU F 13 OE2 0.177 REMARK 500 GLU F 70 CD GLU F 70 OE1 0.074 REMARK 500 ASP F 80 CG ASP F 80 OD2 0.257 REMARK 500 GLU F 93 CG GLU F 93 CD 0.170 REMARK 500 GLN F 180 CD GLN F 180 NE2 0.157 REMARK 500 GLN F 273 CD GLN F 273 NE2 0.286 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP F 80 CB - CG - OD2 ANGL. DEV. = -9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN F 77 68.36 -104.09 REMARK 500 VAL F 124 -72.20 -106.28 REMARK 500 THR F 201 -52.56 -120.82 REMARK 500 LYS F 257 153.65 175.88 REMARK 500 ASP F 309 60.28 38.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP F 264 -10.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M2Y F 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M2Y F 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 F 403 DBREF 6OAG F 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 6OAG MET F -21 UNP P14324 INITIATING METHIONINE SEQADV 6OAG GLY F -20 UNP P14324 EXPRESSION TAG SEQADV 6OAG SER F -19 UNP P14324 EXPRESSION TAG SEQADV 6OAG SER F -18 UNP P14324 EXPRESSION TAG SEQADV 6OAG HIS F -17 UNP P14324 EXPRESSION TAG SEQADV 6OAG HIS F -16 UNP P14324 EXPRESSION TAG SEQADV 6OAG HIS F -15 UNP P14324 EXPRESSION TAG SEQADV 6OAG HIS F -14 UNP P14324 EXPRESSION TAG SEQADV 6OAG HIS F -13 UNP P14324 EXPRESSION TAG SEQADV 6OAG HIS F -12 UNP P14324 EXPRESSION TAG SEQADV 6OAG SER F -11 UNP P14324 EXPRESSION TAG SEQADV 6OAG SER F -10 UNP P14324 EXPRESSION TAG SEQADV 6OAG GLY F -9 UNP P14324 EXPRESSION TAG SEQADV 6OAG ARG F -8 UNP P14324 EXPRESSION TAG SEQADV 6OAG GLU F -7 UNP P14324 EXPRESSION TAG SEQADV 6OAG ASN F -6 UNP P14324 EXPRESSION TAG SEQADV 6OAG LEU F -5 UNP P14324 EXPRESSION TAG SEQADV 6OAG TYR F -4 UNP P14324 EXPRESSION TAG SEQADV 6OAG PHE F -3 UNP P14324 EXPRESSION TAG SEQADV 6OAG GLN F -2 UNP P14324 EXPRESSION TAG SEQADV 6OAG GLY F -1 UNP P14324 EXPRESSION TAG SEQADV 6OAG HIS F 0 UNP P14324 EXPRESSION TAG SEQRES 1 F 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 F 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 F 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 F 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 F 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 F 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY SEQRES 7 F 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 F 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 F 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 F 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 F 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 F 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 F 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 F 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 F 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 F 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 F 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 F 375 LYS THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 F 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 F 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 F 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 F 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 F 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 F 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 F 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 F 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 F 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 F 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 F 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET M2Y F 401 30 HET M2Y F 402 30 HET PO4 F 403 10 HETNAM M2Y [(1S)-1-{[6-(3-CHLORO-4-METHYLPHENYL)THIENO[2,3- HETNAM 2 M2Y D]PYRIMIDIN-4-YL]AMINO}-2-PHENYLETHYL]PHOSPHONIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 2 M2Y 2(C21 H19 CL N3 O3 P S) FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *98(H2 O) HELIX 1 AA1 ASP F 8 THR F 29 1 22 HELIX 2 AA2 GLU F 30 HIS F 35 1 6 HELIX 3 AA3 ILE F 38 ILE F 54 1 17 HELIX 4 AA4 TYR F 58 VAL F 72 1 15 HELIX 5 AA5 GLU F 73 GLN F 77 5 5 HELIX 6 AA6 ASP F 78 SER F 108 1 31 HELIX 7 AA7 CYS F 117 LYS F 121 5 5 HELIX 8 AA8 VAL F 124 LEU F 126 5 3 HELIX 9 AA9 ASP F 127 ARG F 148 1 22 HELIX 10 AB1 TYR F 152 ALA F 178 1 27 HELIX 11 AB2 THR F 189 THR F 201 1 13 HELIX 12 AB3 THR F 201 ALA F 217 1 17 HELIX 13 AB4 GLY F 221 GLY F 250 1 30 HELIX 14 AB5 ASP F 251 GLY F 256 1 6 HELIX 15 AB6 THR F 260 ASN F 265 1 6 HELIX 16 AB7 SER F 268 ALA F 278 1 11 HELIX 17 AB8 THR F 279 TYR F 290 1 12 HELIX 18 AB9 VAL F 298 LEU F 308 1 11 HELIX 19 AC1 ASP F 309 ALA F 333 1 25 HELIX 20 AC2 PRO F 338 TYR F 349 1 12 CISPEP 1 ALA F 334 PRO F 335 0 5.65 SITE 1 AC1 8 LYS F 57 ASN F 59 SER F 205 PHE F 206 SITE 2 AC1 8 PHE F 239 ASP F 243 LEU F 344 PO4 F 403 SITE 1 AC2 8 GLY F 114 GLN F 115 GLU F 318 TYR F 322 SITE 2 AC2 8 MET F 326 ARG F 346 TYR F 349 LYS F 350 SITE 1 AC3 11 GLY F 56 LYS F 57 TYR F 58 ASN F 59 SITE 2 AC3 11 ARG F 60 GLN F 96 ARG F 113 M2Y F 401 SITE 3 AC3 11 HOH F 501 HOH F 502 HOH F 570 CRYST1 111.350 111.350 76.860 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008981 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013011 0.00000