HEADER VIRUS 16-MAR-19 6OAI TITLE CRYSTAL STRUCTURE OF P[6] ROTAVIRUS VP8* COMPLEXED WITH LNFPI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE-SENSITIVE OUTER CAPSID PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: VP8* DOMAIN, RESIDUES 49-207; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ROTAVIRUS A; SOURCE 3 ORGANISM_TAXID: 10941; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROTAVIRUS, HOST RECEPTOR INTERACTION, VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR S.XU,Y.LIU,X.JIANG,M.A.KENNEDY REVDAT 4 11-OCT-23 6OAI 1 HETSYN REVDAT 3 29-JUL-20 6OAI 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 08-APR-20 6OAI 1 JRNL REVDAT 1 18-MAR-20 6OAI 0 JRNL AUTH S.XU,L.U.AHMED,M.R.STUCKERT,K.R.MCGINNIS,Y.LIU,M.TAN, JRNL AUTH 2 P.HUANG,W.ZHONG,D.ZHAO,X.JIANG,M.A.KENNEDY JRNL TITL MOLECULAR BASIS OF P[II] MAJOR HUMAN ROTAVIRUS VP8* DOMAIN JRNL TITL 2 RECOGNITION OF HISTO-BLOOD GROUP ANTIGENS. JRNL REF PLOS PATHOG. V. 16 08386 2020 JRNL REFN ESSN 1553-7374 JRNL PMID 32208455 JRNL DOI 10.1371/JOURNAL.PPAT.1008386 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 46445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2342 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3268 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.27000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 1.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.95000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.182 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5394 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4659 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7363 ; 1.563 ; 1.671 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10906 ; 1.329 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 629 ; 8.748 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 288 ;37.635 ;24.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 870 ;13.104 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.195 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 738 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5920 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1118 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6OAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48808 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 74.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6NIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE, 1.0 M LITHIUM SULFATE MONOHYDRATE, REMARK 280 PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.93500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 160 REMARK 465 LEU C 160 REMARK 465 LEU D 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 87 CD GLU A 87 OE1 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 92 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 8 142.00 -38.29 REMARK 500 THR A 24 -81.63 -96.14 REMARK 500 PRO A 118 30.90 -97.54 REMARK 500 THR B 24 -77.12 -99.69 REMARK 500 ASN B 25 20.63 -141.50 REMARK 500 THR B 36 -55.38 -132.57 REMARK 500 ASN B 51 114.44 -29.09 REMARK 500 TYR B 107 -92.57 72.35 REMARK 500 PRO B 118 34.51 -96.44 REMARK 500 THR C 24 -73.97 -96.12 REMARK 500 ASN C 25 38.61 -150.25 REMARK 500 THR C 36 -59.80 -124.49 REMARK 500 ASN C 51 119.29 -34.02 REMARK 500 ASN C 108 2.00 80.24 REMARK 500 PRO C 118 33.54 -91.50 REMARK 500 ASN C 129 55.25 -142.62 REMARK 500 THR C 158 -6.85 -140.63 REMARK 500 ASP D 16 18.60 83.87 REMARK 500 THR D 24 -74.81 -98.35 REMARK 500 ASN D 25 20.91 -147.61 REMARK 500 THR D 36 -61.23 -127.53 REMARK 500 ASN D 129 49.86 -147.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER B 82 -10.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 6OAI A 2 160 UNP D2DXN5 D2DXN5_9REOV 49 207 DBREF 6OAI B 2 160 UNP D2DXN5 D2DXN5_9REOV 49 207 DBREF 6OAI C 2 160 UNP D2DXN5 D2DXN5_9REOV 49 207 DBREF 6OAI D 2 160 UNP D2DXN5 D2DXN5_9REOV 49 207 SEQRES 1 A 159 LEU ASP GLY PRO TYR GLN PRO THR ASN PHE LYS PRO PRO SEQRES 2 A 159 ASN ASP TYR TRP ILE LEU LEU ASN PRO THR ASN GLN GLN SEQRES 3 A 159 VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE TRP VAL SEQRES 4 A 159 ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SER SEQRES 5 A 159 ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE THR SEQRES 6 A 159 VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE GLU MET SEQRES 7 A 159 PHE ARG SER ASN VAL SER ALA GLU PHE GLN HIS LYS ARG SEQRES 8 A 159 THR LEU THR SER ASP THR LYS LEU ALA GLY PHE MET LYS SEQRES 9 A 159 PHE TYR ASN SER VAL TRP THR PHE HIS GLY GLU THR PRO SEQRES 10 A 159 HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SER SEQRES 11 A 159 GLU VAL GLU THR VAL ILE HIS VAL GLU PHE TYR ILE ILE SEQRES 12 A 159 PRO ARG SER GLN GLU SER LYS CYS SER GLU TYR ILE ASN SEQRES 13 A 159 THR GLY LEU SEQRES 1 B 159 LEU ASP GLY PRO TYR GLN PRO THR ASN PHE LYS PRO PRO SEQRES 2 B 159 ASN ASP TYR TRP ILE LEU LEU ASN PRO THR ASN GLN GLN SEQRES 3 B 159 VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE TRP VAL SEQRES 4 B 159 ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SER SEQRES 5 B 159 ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE THR SEQRES 6 B 159 VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE GLU MET SEQRES 7 B 159 PHE ARG SER ASN VAL SER ALA GLU PHE GLN HIS LYS ARG SEQRES 8 B 159 THR LEU THR SER ASP THR LYS LEU ALA GLY PHE MET LYS SEQRES 9 B 159 PHE TYR ASN SER VAL TRP THR PHE HIS GLY GLU THR PRO SEQRES 10 B 159 HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SER SEQRES 11 B 159 GLU VAL GLU THR VAL ILE HIS VAL GLU PHE TYR ILE ILE SEQRES 12 B 159 PRO ARG SER GLN GLU SER LYS CYS SER GLU TYR ILE ASN SEQRES 13 B 159 THR GLY LEU SEQRES 1 C 159 LEU ASP GLY PRO TYR GLN PRO THR ASN PHE LYS PRO PRO SEQRES 2 C 159 ASN ASP TYR TRP ILE LEU LEU ASN PRO THR ASN GLN GLN SEQRES 3 C 159 VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE TRP VAL SEQRES 4 C 159 ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SER SEQRES 5 C 159 ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE THR SEQRES 6 C 159 VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE GLU MET SEQRES 7 C 159 PHE ARG SER ASN VAL SER ALA GLU PHE GLN HIS LYS ARG SEQRES 8 C 159 THR LEU THR SER ASP THR LYS LEU ALA GLY PHE MET LYS SEQRES 9 C 159 PHE TYR ASN SER VAL TRP THR PHE HIS GLY GLU THR PRO SEQRES 10 C 159 HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SER SEQRES 11 C 159 GLU VAL GLU THR VAL ILE HIS VAL GLU PHE TYR ILE ILE SEQRES 12 C 159 PRO ARG SER GLN GLU SER LYS CYS SER GLU TYR ILE ASN SEQRES 13 C 159 THR GLY LEU SEQRES 1 D 159 LEU ASP GLY PRO TYR GLN PRO THR ASN PHE LYS PRO PRO SEQRES 2 D 159 ASN ASP TYR TRP ILE LEU LEU ASN PRO THR ASN GLN GLN SEQRES 3 D 159 VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE TRP VAL SEQRES 4 D 159 ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SER SEQRES 5 D 159 ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE THR SEQRES 6 D 159 VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE GLU MET SEQRES 7 D 159 PHE ARG SER ASN VAL SER ALA GLU PHE GLN HIS LYS ARG SEQRES 8 D 159 THR LEU THR SER ASP THR LYS LEU ALA GLY PHE MET LYS SEQRES 9 D 159 PHE TYR ASN SER VAL TRP THR PHE HIS GLY GLU THR PRO SEQRES 10 D 159 HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SER SEQRES 11 D 159 GLU VAL GLU THR VAL ILE HIS VAL GLU PHE TYR ILE ILE SEQRES 12 D 159 PRO ARG SER GLN GLU SER LYS CYS SER GLU TYR ILE ASN SEQRES 13 D 159 THR GLY LEU HET BGC E 1 12 HET GAL E 2 11 HET NAG E 3 14 HET GAL E 4 11 HET FUC E 5 10 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 BGC C6 H12 O6 FORMUL 5 GAL 2(C6 H12 O6) FORMUL 5 NAG C8 H15 N O6 FORMUL 5 FUC C6 H12 O5 FORMUL 6 HOH *148(H2 O) HELIX 1 AA1 ASN A 129 VAL A 133 5 5 HELIX 2 AA2 GLN A 148 GLY A 159 1 12 HELIX 3 AA3 GLN B 148 GLY B 159 1 12 HELIX 4 AA4 ASN C 129 VAL C 133 5 5 HELIX 5 AA5 GLN C 148 GLY C 159 1 12 HELIX 6 AA6 ASN D 129 VAL D 133 5 5 HELIX 7 AA7 GLN D 148 GLY D 159 1 12 SHEET 1 AA111 ASP A 3 TYR A 6 0 SHEET 2 AA111 GLU A 140 PRO A 145 -1 O PHE A 141 N TYR A 6 SHEET 3 AA111 TYR A 17 ASN A 22 -1 N TRP A 18 O ILE A 144 SHEET 4 AA111 ALA A 101 PHE A 106 -1 O PHE A 103 N ILE A 19 SHEET 5 AA111 SER A 109 GLU A 116 -1 O TRP A 111 N MET A 104 SHEET 6 AA111 GLN A 89 SER A 96 1 N THR A 95 O GLY A 115 SHEET 7 AA111 TRP A 74 ARG A 81 -1 N PHE A 76 O LEU A 94 SHEET 8 AA111 TRP A 39 VAL A 45 -1 N ALA A 41 O MET A 79 SHEET 9 AA111 VAL A 28 THR A 33 -1 N GLY A 32 O VAL A 40 SHEET 10 AA111 GLU A 134 ILE A 137 -1 O VAL A 136 N GLU A 31 SHEET 11 AA111 THR A 9 PHE A 11 -1 N THR A 9 O ILE A 137 SHEET 1 AA2 6 ASP A 3 TYR A 6 0 SHEET 2 AA2 6 GLU A 140 PRO A 145 -1 O PHE A 141 N TYR A 6 SHEET 3 AA2 6 TYR A 17 ASN A 22 -1 N TRP A 18 O ILE A 144 SHEET 4 AA2 6 ALA A 101 PHE A 106 -1 O PHE A 103 N ILE A 19 SHEET 5 AA2 6 SER A 109 GLU A 116 -1 O TRP A 111 N MET A 104 SHEET 6 AA2 6 THR A 121 SER A 126 -1 O SER A 125 N VAL A 110 SHEET 1 AA3 2 VAL A 49 LEU A 58 0 SHEET 2 AA3 2 GLU A 61 ASN A 69 -1 O ILE A 65 N ARG A 54 SHEET 1 AA411 ASP B 3 TYR B 6 0 SHEET 2 AA411 GLU B 140 PRO B 145 -1 O PHE B 141 N TYR B 6 SHEET 3 AA411 TYR B 17 ASN B 22 -1 N TRP B 18 O ILE B 144 SHEET 4 AA411 ALA B 101 PHE B 106 -1 O PHE B 103 N ILE B 19 SHEET 5 AA411 SER B 109 GLU B 116 -1 O TRP B 111 N MET B 104 SHEET 6 AA411 GLN B 89 SER B 96 1 N THR B 95 O GLY B 115 SHEET 7 AA411 TRP B 74 ARG B 81 -1 N TRP B 74 O SER B 96 SHEET 8 AA411 TRP B 39 VAL B 45 -1 N ALA B 41 O MET B 79 SHEET 9 AA411 VAL B 28 THR B 33 -1 N GLY B 32 O VAL B 40 SHEET 10 AA411 GLU B 134 ILE B 137 -1 O VAL B 136 N GLU B 31 SHEET 11 AA411 THR B 9 PHE B 11 -1 N PHE B 11 O THR B 135 SHEET 1 AA5 6 ASP B 3 TYR B 6 0 SHEET 2 AA5 6 GLU B 140 PRO B 145 -1 O PHE B 141 N TYR B 6 SHEET 3 AA5 6 TYR B 17 ASN B 22 -1 N TRP B 18 O ILE B 144 SHEET 4 AA5 6 ALA B 101 PHE B 106 -1 O PHE B 103 N ILE B 19 SHEET 5 AA5 6 SER B 109 GLU B 116 -1 O TRP B 111 N MET B 104 SHEET 6 AA5 6 THR B 121 SER B 126 -1 O SER B 125 N VAL B 110 SHEET 1 AA6 2 VAL B 49 LEU B 58 0 SHEET 2 AA6 2 GLU B 61 ASN B 69 -1 O ILE B 65 N ARG B 54 SHEET 1 AA711 ASP C 3 TYR C 6 0 SHEET 2 AA711 GLU C 140 PRO C 145 -1 O PHE C 141 N TYR C 6 SHEET 3 AA711 TYR C 17 ASN C 22 -1 N TRP C 18 O ILE C 144 SHEET 4 AA711 ALA C 101 PHE C 106 -1 O PHE C 103 N ILE C 19 SHEET 5 AA711 SER C 109 GLU C 116 -1 O TRP C 111 N MET C 104 SHEET 6 AA711 GLN C 89 SER C 96 1 N THR C 93 O GLY C 115 SHEET 7 AA711 TRP C 74 ARG C 81 -1 N TRP C 74 O SER C 96 SHEET 8 AA711 TRP C 39 VAL C 45 -1 N ALA C 41 O MET C 79 SHEET 9 AA711 VAL C 28 THR C 33 -1 N GLY C 32 O VAL C 40 SHEET 10 AA711 GLU C 134 ILE C 137 -1 O VAL C 136 N GLU C 31 SHEET 11 AA711 THR C 9 PHE C 11 -1 N PHE C 11 O THR C 135 SHEET 1 AA8 6 ASP C 3 TYR C 6 0 SHEET 2 AA8 6 GLU C 140 PRO C 145 -1 O PHE C 141 N TYR C 6 SHEET 3 AA8 6 TYR C 17 ASN C 22 -1 N TRP C 18 O ILE C 144 SHEET 4 AA8 6 ALA C 101 PHE C 106 -1 O PHE C 103 N ILE C 19 SHEET 5 AA8 6 SER C 109 GLU C 116 -1 O TRP C 111 N MET C 104 SHEET 6 AA8 6 THR C 121 SER C 126 -1 O SER C 125 N VAL C 110 SHEET 1 AA9 2 VAL C 49 LEU C 58 0 SHEET 2 AA9 2 GLU C 61 ASN C 69 -1 O GLU C 61 N LEU C 58 SHEET 1 AB111 ASP D 3 TYR D 6 0 SHEET 2 AB111 GLU D 140 PRO D 145 -1 O PHE D 141 N TYR D 6 SHEET 3 AB111 TYR D 17 ASN D 22 -1 N TRP D 18 O ILE D 144 SHEET 4 AB111 ALA D 101 PHE D 106 -1 O PHE D 103 N ILE D 19 SHEET 5 AB111 SER D 109 GLU D 116 -1 O TRP D 111 N MET D 104 SHEET 6 AB111 GLN D 89 SER D 96 1 N THR D 95 O GLY D 115 SHEET 7 AB111 TRP D 74 ARG D 81 -1 N PHE D 80 O GLN D 89 SHEET 8 AB111 TRP D 39 VAL D 45 -1 N VAL D 45 O LYS D 75 SHEET 9 AB111 VAL D 28 THR D 33 -1 N GLY D 32 O VAL D 40 SHEET 10 AB111 GLU D 134 ILE D 137 -1 O VAL D 136 N GLU D 31 SHEET 11 AB111 THR D 9 PHE D 11 -1 N THR D 9 O ILE D 137 SHEET 1 AB2 6 ASP D 3 TYR D 6 0 SHEET 2 AB2 6 GLU D 140 PRO D 145 -1 O PHE D 141 N TYR D 6 SHEET 3 AB2 6 TYR D 17 ASN D 22 -1 N TRP D 18 O ILE D 144 SHEET 4 AB2 6 ALA D 101 PHE D 106 -1 O PHE D 103 N ILE D 19 SHEET 5 AB2 6 SER D 109 GLU D 116 -1 O TRP D 111 N MET D 104 SHEET 6 AB2 6 THR D 121 SER D 126 -1 O ASP D 123 N THR D 112 SHEET 1 AB3 2 VAL D 49 LEU D 58 0 SHEET 2 AB3 2 GLU D 61 ASN D 69 -1 O LYS D 63 N TYR D 56 LINK O4 BGC E 1 C1 GAL E 2 1555 1555 1.36 LINK O3 GAL E 2 C1 NAG E 3 1555 1555 1.45 LINK O3 NAG E 3 C1 GAL E 4 1555 1555 1.42 LINK O2 GAL E 4 C1 FUC E 5 1555 1555 1.41 CISPEP 1 GLY A 4 PRO A 5 0 5.53 CISPEP 2 THR A 117 PRO A 118 0 4.33 CISPEP 3 GLY B 4 PRO B 5 0 0.77 CISPEP 4 THR B 117 PRO B 118 0 2.22 CISPEP 5 GLY C 4 PRO C 5 0 -7.32 CISPEP 6 THR C 117 PRO C 118 0 3.08 CISPEP 7 GLY D 4 PRO D 5 0 4.14 CISPEP 8 THR D 117 PRO D 118 0 2.32 CRYST1 56.690 75.870 74.927 90.00 91.86 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017640 0.000000 0.000572 0.00000 SCALE2 0.000000 0.013180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013353 0.00000