HEADER PROTEIN BINDING 19-MAR-19 6OB1 TITLE STRUCTURE OF WHB IN COMPLEX WITH UBIQUITIN VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UBIQUITIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ANAPHASE-PROMOTING COMPLEX SUBUNIT 2; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: APC2,CYCLOSOME SUBUNIT 2; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 5 PPPARG4; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1182032; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 11 PPPARG4; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 1182032; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: ANAPC2, APC2, KIAA1406; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 19 PPPARG4; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS UBIQUITIN, WHB, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.W.EDMOND,C.R.GRACE REVDAT 4 01-MAY-24 6OB1 1 REMARK REVDAT 3 18-DEC-19 6OB1 1 REMARK REVDAT 2 04-SEP-19 6OB1 1 JRNL REVDAT 1 14-AUG-19 6OB1 0 JRNL AUTH E.R.WATSON,C.R.R.GRACE,W.ZHANG,D.J.MILLER,I.F.DAVIDSON, JRNL AUTH 2 J.R.PRABU,S.YU,D.L.BOLHUIS,E.T.KULKO,R.VOLLRATH,D.HASELBACH, JRNL AUTH 3 H.STARK,J.M.PETERS,N.G.BROWN,S.S.SIDHU,B.A.SCHULMAN JRNL TITL PROTEIN ENGINEERING OF A UBIQUITIN-VARIANT INHIBITOR OF JRNL TITL 2 APC/C IDENTIFIES A CRYPTIC K48 UBIQUITIN CHAIN BINDING SITE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 17280 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31350353 JRNL DOI 10.1073/PNAS.1902889116 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CNS REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES FROM CYANA WERE MINIMIZED REMARK 3 WITH CNS REMARK 4 REMARK 4 6OB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240239. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : ATMOSPHERIC ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 WHB, 0.6 MM UBIQUITIN VARIANT, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC; 3D 1H- REMARK 210 13C FILTERED NOESY; 3D HBHA(CO) REMARK 210 NH; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 46 17.10 58.81 REMARK 500 1 ILE A 61 99.88 -67.75 REMARK 500 1 THR A 72 110.33 -38.42 REMARK 500 1 LEU A 73 -65.04 -103.07 REMARK 500 1 THR B 172 93.92 -44.42 REMARK 500 1 LEU B 173 72.42 -150.65 REMARK 500 1 GLU C 735 -45.49 -143.73 REMARK 500 1 SER C 738 -36.02 -150.96 REMARK 500 1 GLN C 743 -61.50 -173.85 REMARK 500 1 ASN C 764 -46.67 -130.05 REMARK 500 1 SER C 767 105.41 173.90 REMARK 500 1 ALA C 786 106.08 -49.96 REMARK 500 1 LEU C 787 13.64 55.30 REMARK 500 1 GLU C 789 124.72 75.46 REMARK 500 1 SER C 811 -154.67 -80.70 REMARK 500 1 PRO C 818 83.12 -66.63 REMARK 500 2 LYS A 33 -73.38 -82.37 REMARK 500 2 THR A 72 97.89 -32.40 REMARK 500 2 LEU A 73 -90.84 -91.87 REMARK 500 2 THR B 172 89.94 -48.08 REMARK 500 2 LEU B 173 -158.10 -158.07 REMARK 500 2 SER C 738 28.20 -145.88 REMARK 500 2 ALA C 741 18.60 -170.44 REMARK 500 2 GLN C 743 -47.92 -168.80 REMARK 500 2 ASN C 764 -51.18 -121.76 REMARK 500 2 SER C 767 105.52 127.22 REMARK 500 2 ALA C 786 109.16 -49.07 REMARK 500 2 LEU C 787 9.69 58.78 REMARK 500 2 GLU C 789 117.16 70.59 REMARK 500 2 SER C 811 -143.78 -111.46 REMARK 500 2 LYS C 819 -7.44 72.63 REMARK 500 2 ASN C 820 -179.18 177.55 REMARK 500 3 THR A 72 109.32 -35.21 REMARK 500 3 LEU A 73 -69.20 -135.59 REMARK 500 3 THR B 172 91.85 -57.90 REMARK 500 3 LEU B 173 -93.41 169.69 REMARK 500 3 GLN C 743 -65.25 -168.92 REMARK 500 3 ASN C 764 -60.43 -120.92 REMARK 500 3 GLU C 766 28.67 -71.63 REMARK 500 3 ALA C 786 -89.19 29.65 REMARK 500 3 ALA C 788 64.31 62.31 REMARK 500 3 GLU C 789 117.97 69.12 REMARK 500 3 SER C 811 -145.27 -85.68 REMARK 500 3 LYS C 819 92.94 -67.37 REMARK 500 3 CYS C 821 88.34 -65.00 REMARK 500 4 ALA A 46 18.68 58.32 REMARK 500 4 GLU A 64 52.14 39.27 REMARK 500 4 THR A 72 124.85 -37.28 REMARK 500 4 LEU A 73 -70.82 -164.80 REMARK 500 4 ASP C 737 112.54 68.71 REMARK 500 REMARK 500 THIS ENTRY HAS 262 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30590 RELATED DB: BMRB REMARK 900 STRUCTURE OF WHB IN COMPLEX WITH UBIQUITIN VARIANT DBREF 6OB1 A 0 18 PDB 6OB1 6OB1 0 18 DBREF 6OB1 A 19 74 PDB 6OB1 6OB1 19 74 DBREF 6OB1 B 100 174 PDB 6OB1 6OB1 100 174 DBREF 6OB1 C 735 822 UNP Q9UJX6 ANC2_HUMAN 735 822 SEQADV 6OB1 GLY C 733 UNP Q9UJX6 EXPRESSION TAG SEQADV 6OB1 SER C 734 UNP Q9UJX6 EXPRESSION TAG SEQRES 1 A 75 GLY MET GLN ILE PHE VAL ASP THR VAL GLN TRP LYS THR SEQRES 2 A 75 ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN SEQRES 3 A 75 VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO SEQRES 4 A 75 ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU SEQRES 5 A 75 ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SEQRES 6 A 75 SER ALA LEU ILE LEU LEU LEU THR LEU ARG SEQRES 1 B 75 GLY MET GLN ILE PHE VAL ASP THR VAL GLN TRP LYS THR SEQRES 2 B 75 ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN SEQRES 3 B 75 VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO SEQRES 4 B 75 ASP GLN GLN ARG LEU ASP PHE ALA GLY LYS GLN LEU GLU SEQRES 5 B 75 ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SEQRES 6 B 75 SER ALA LEU ILE LEU LEU LEU THR LEU ARG SEQRES 1 C 90 GLY SER GLU SER ASP SER GLY MET ALA SER GLN ALA ASP SEQRES 2 C 90 GLN LYS GLU GLU GLU LEU LEU LEU PHE TRP THR TYR ILE SEQRES 3 C 90 GLN ALA MET LEU THR ASN LEU GLU SER LEU SER LEU ASP SEQRES 4 C 90 ARG ILE TYR ASN MET LEU ARG MET PHE VAL VAL THR GLY SEQRES 5 C 90 PRO ALA LEU ALA GLU ILE ASP LEU GLN GLU LEU GLN GLY SEQRES 6 C 90 TYR LEU GLN LYS LYS VAL ARG ASP GLN GLN LEU VAL TYR SEQRES 7 C 90 SER ALA GLY VAL TYR ARG LEU PRO LYS ASN CYS SER HELIX 1 AA1 THR A 22 GLU A 34 1 13 HELIX 2 AA2 THR B 122 GLU B 134 1 13 HELIX 3 AA3 LEU B 156 ASN B 160 5 5 HELIX 4 AA4 GLN C 743 THR C 763 1 21 HELIX 5 AA5 SER C 769 THR C 783 1 15 HELIX 6 AA6 PRO C 785 GLU C 789 5 5 HELIX 7 AA7 ASP C 791 ASP C 805 1 15 SHEET 1 AA1 8 LYS A 48 GLN A 49 0 SHEET 2 AA1 8 GLN A 41 PHE A 45 -1 N PHE A 45 O LYS A 48 SHEET 3 AA1 8 ALA A 66 LEU A 71 -1 O LEU A 70 N ARG A 42 SHEET 4 AA1 8 MET B 101 VAL B 117 1 O ASP B 106 N LEU A 67 SHEET 5 AA1 8 MET A 1 VAL A 17 -1 N MET A 1 O VAL B 117 SHEET 6 AA1 8 SER B 165 LEU B 171 1 O SER B 165 N PHE A 4 SHEET 7 AA1 8 GLN B 141 PHE B 145 -1 N ARG B 142 O LEU B 170 SHEET 8 AA1 8 LYS B 148 GLN B 149 -1 O LYS B 148 N PHE B 145 SHEET 1 AA2 2 VAL C 809 TYR C 810 0 SHEET 2 AA2 2 TYR C 815 ARG C 816 -1 O ARG C 816 N VAL C 809 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1