HEADER BIOSYNTHETIC PROTEIN 21-MAR-19 6OBW TITLE CSP1-CYC(K6D10) COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPETENCE-STIMULATING PEPTIDE TYPE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CSP-1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: LYS AND ASP WERE CHEMICALLY ADDED TO THE 6TH AND 10TH COMPND 7 POSITIONS CHEMICALLY AND THEN CYCLIZED. HOWEVER, DURING STRUCTURE COMPND 8 CALCULATION, ASP10 WAS LABELED AS ASN10 TO CONSTRUCT THE MACROCYCLE COMPND 9 FOR CONVENIENCE. ASN10 WAS KEPT IN THE FINAL COORDINATE FILE AND COMPND 10 CHEMICAL SHIFT FILE FOR CONSISTENCY. THE ACTUAL SEQUENCE IS STILL: COMPND 11 EMRLS(LYS)FFR(ASP)FILQRKK SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 4 ORGANISM_TAXID: 1313 KEYWDS MODULATOR FOR QUORUM SENSING IN STREPTOCOCCUS PNEUMONIAE, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.YANG REVDAT 4 14-JUN-23 6OBW 1 REMARK REVDAT 3 05-FEB-20 6OBW 1 JRNL REVDAT 2 22-JAN-20 6OBW 1 JRNL REVDAT 1 08-JAN-20 6OBW 0 JRNL AUTH Y.YANG,J.LIN,A.HARRINGTON,G.CORNILESCU,G.W.LAU,Y.TAL-GAN JRNL TITL DESIGNING CYCLIC COMPETENCE-STIMULATING PEPTIDE (CSP) JRNL TITL 2 ANALOGS WITH PAN-GROUP QUORUM-SENSING INHIBITION ACTIVITY JRNL TITL 3 INSTREPTOCOCCUS PNEUMONIAE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 1689 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 31915298 JRNL DOI 10.1073/PNAS.1915812117 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TORSION ANGLE DYNAMICS WITH EEFX REMARK 3 REFINEMENT REMARK 4 REMARK 4 6OBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240389. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.9 MM CSP1-CYC(K6D10), 250 MM REMARK 210 DEUTERIUM DPC, 137 MM SODIUM REMARK 210 CHLORIDE, 2.7 MM POTASSIUM REMARK 210 CHLORIDE, 10 MM NA2HPO4, 1.8 MM REMARK 210 KH2PO4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 6 -55.88 -137.53 REMARK 500 1 ILE A 12 134.95 171.27 REMARK 500 2 LYS A 6 -55.07 -139.17 REMARK 500 2 ILE A 12 136.69 170.82 REMARK 500 2 LYS A 16 -83.38 69.46 REMARK 500 3 LYS A 6 -52.17 -137.61 REMARK 500 3 PHE A 11 -71.28 -78.17 REMARK 500 4 LYS A 6 -56.23 -137.50 REMARK 500 4 ILE A 12 144.00 168.33 REMARK 500 5 LYS A 6 -56.22 -136.47 REMARK 500 5 ILE A 12 134.59 169.25 REMARK 500 5 GLN A 14 -38.15 -132.99 REMARK 500 6 LYS A 6 -58.05 -141.21 REMARK 500 6 ILE A 12 133.87 172.76 REMARK 500 7 LYS A 6 -46.52 -130.59 REMARK 500 7 ILE A 12 132.81 169.44 REMARK 500 7 GLN A 14 36.51 -144.91 REMARK 500 8 LYS A 6 -56.26 -135.10 REMARK 500 8 ILE A 12 135.44 171.15 REMARK 500 9 LYS A 6 -50.24 -132.07 REMARK 500 9 PHE A 11 -70.08 -74.53 REMARK 500 9 ILE A 12 136.61 -174.95 REMARK 500 9 GLN A 14 -36.40 -132.69 REMARK 500 10 ILE A 12 137.98 -175.43 REMARK 500 10 GLN A 14 -36.37 -134.57 REMARK 500 11 ILE A 12 136.86 177.62 REMARK 500 12 PHE A 11 -99.86 -80.42 REMARK 500 13 LYS A 6 -54.97 -136.52 REMARK 500 13 ILE A 12 136.68 171.18 REMARK 500 14 ILE A 12 135.90 173.55 REMARK 500 15 LYS A 6 -55.76 -137.05 REMARK 500 15 ILE A 12 136.37 172.73 REMARK 500 16 LYS A 6 -51.93 -133.79 REMARK 500 16 PHE A 11 -79.97 -77.91 REMARK 500 17 LYS A 6 -54.61 -136.08 REMARK 500 17 ILE A 12 129.91 166.17 REMARK 500 18 ILE A 12 133.84 172.67 REMARK 500 19 LYS A 6 -54.11 -137.67 REMARK 500 19 ILE A 12 134.68 165.13 REMARK 500 20 LYS A 6 -54.35 -141.72 REMARK 500 20 ILE A 12 120.49 78.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30593 RELATED DB: BMRB REMARK 900 CSP1-CYC(K6D10) DBREF 6OBW A 1 17 UNP P60242 CSP1_STREE 25 41 SEQADV 6OBW ASN A 10 UNP P60242 ASP 34 CONFLICT SEQRES 1 A 17 GLU MET ARG LEU SER LYS PHE PHE ARG ASN PHE ILE LEU SEQRES 2 A 17 GLN ARG LYS LYS LINK CE LYS A 6 ND2 ASN A 10 1555 1555 1.50 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1