HEADER IMMUNE SYSTEM 22-MAR-19 6OCB TITLE CRYSTAL STRUCTURE OF FLUA-20 FAB IN COMPLEX WITH THE HEAD DOMAIN OF H3 TITLE 2 (A/HONG KONG/1/1968) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN OF FLUA-20 FAB; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN OF FLUA-20 FAB; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HEMAGGLUTININ; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 13 ORGANISM_TAXID: 506350; SOURCE 14 STRAIN: A/HONG KONG/1/1968 H3N2; SOURCE 15 VARIANT: A/HONG KONG/1/1968 H3N2; SOURCE 16 GENE: HA; SOURCE 17 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS ANTI-FLU ANTIBODY, HA HEAD DOMAIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR I.A.WILSON,S.LANG REVDAT 5 11-OCT-23 6OCB 1 REMARK REVDAT 4 09-DEC-20 6OCB 1 JRNL REMARK HETSYN REVDAT 3 29-JUL-20 6OCB 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 04-DEC-19 6OCB 1 REMARK REVDAT 1 29-MAY-19 6OCB 0 JRNL AUTH S.BANGARU,S.LANG,M.SCHOTSAERT,H.A.VANDERVEN,X.ZHU,N.KOSE, JRNL AUTH 2 R.BOMBARDI,J.A.FINN,S.J.KENT,P.GILCHUK,I.GILCHUK,H.L.TURNER, JRNL AUTH 3 A.GARCIA-SASTRE,S.LI,A.B.WARD,I.A.WILSON,J.E.CROWE JR. JRNL TITL A SITE OF VULNERABILITY ON THE INFLUENZA VIRUS HEMAGGLUTININ JRNL TITL 2 HEAD DOMAIN TRIMER INTERFACE. JRNL REF CELL V. 177 1136 2019 JRNL REFN ISSN 1097-4172 JRNL PMID 31100268 JRNL DOI 10.1016/J.CELL.2019.04.011 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 59094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8140 - 5.7603 0.97 2876 160 0.2123 0.2383 REMARK 3 2 5.7603 - 4.5746 0.98 2752 140 0.1690 0.2007 REMARK 3 3 4.5746 - 3.9971 0.99 2727 132 0.1638 0.1828 REMARK 3 4 3.9971 - 3.6320 1.00 2735 134 0.1832 0.2205 REMARK 3 5 3.6320 - 3.3718 1.00 2680 145 0.1966 0.2275 REMARK 3 6 3.3718 - 3.1731 1.00 2727 135 0.2078 0.2211 REMARK 3 7 3.1731 - 3.0143 1.00 2658 156 0.2122 0.2739 REMARK 3 8 3.0143 - 2.8831 1.00 2692 139 0.2246 0.2983 REMARK 3 9 2.8831 - 2.7722 1.00 2677 144 0.2183 0.3007 REMARK 3 10 2.7722 - 2.6765 1.00 2671 135 0.2240 0.2580 REMARK 3 11 2.6765 - 2.5929 1.00 2604 188 0.2180 0.2457 REMARK 3 12 2.5929 - 2.5188 1.00 2680 123 0.2133 0.2617 REMARK 3 13 2.5188 - 2.4525 1.00 2656 126 0.2064 0.2838 REMARK 3 14 2.4525 - 2.3926 1.00 2647 137 0.2066 0.2373 REMARK 3 15 2.3926 - 2.3382 1.00 2648 134 0.2175 0.2333 REMARK 3 16 2.3382 - 2.2885 1.00 2643 144 0.2241 0.2520 REMARK 3 17 2.2885 - 2.2427 1.00 2663 128 0.2342 0.2802 REMARK 3 18 2.2427 - 2.2004 1.00 2633 147 0.2333 0.2720 REMARK 3 19 2.2004 - 2.1611 1.00 2623 142 0.2449 0.3083 REMARK 3 20 2.1611 - 2.1245 1.00 2614 135 0.2463 0.2607 REMARK 3 21 2.1245 - 2.1000 0.95 2525 139 0.2461 0.2664 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 5610 REMARK 3 ANGLE : 1.622 7660 REMARK 3 CHIRALITY : 0.099 861 REMARK 3 PLANARITY : 0.013 985 REMARK 3 DIHEDRAL : 13.854 3361 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -27.2244 11.8877 17.6889 REMARK 3 T TENSOR REMARK 3 T11: 0.2685 T22: 0.1497 REMARK 3 T33: 0.2718 T12: 0.0108 REMARK 3 T13: 0.0209 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.3855 L22: 0.7877 REMARK 3 L33: 1.7104 L12: 0.1311 REMARK 3 L13: 0.3588 L23: 0.3841 REMARK 3 S TENSOR REMARK 3 S11: -0.0595 S12: 0.0906 S13: 0.0362 REMARK 3 S21: -0.1122 S22: -0.0314 S23: 0.0347 REMARK 3 S31: -0.2521 S32: 0.0703 S33: 0.0884 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OCB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59126 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.83000 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FP8, 6OBZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5 0.2 M LITHIUM REMARK 280 SULFATE 40% (V/V) PEG400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.86850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.27700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.27700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.93425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.27700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.27700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 203.80275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.27700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.27700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.93425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.27700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.27700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 203.80275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 135.86850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 HIS H 217 REMARK 465 HIS H 218 REMARK 465 HIS H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 CYS L 214 REMARK 465 GLY A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS H 209 O HOH H 301 1.35 REMARK 500 O HOH A 945 O HOH A 950 1.84 REMARK 500 O HOH H 340 O HOH L 367 1.85 REMARK 500 OE1 GLU L 161 O HOH L 301 1.87 REMARK 500 OD2 ASP H 56 O HOH H 302 1.92 REMARK 500 OD1 ASP A 101 O HOH A 801 1.96 REMARK 500 O HOH L 383 O HOH L 402 2.01 REMARK 500 O SER H 188 O HOH H 303 2.03 REMARK 500 NE ARG L 142 O HOH L 302 2.05 REMARK 500 O HOH H 371 O HOH H 374 2.07 REMARK 500 O HOH L 371 O HOH L 375 2.07 REMARK 500 CB LEU L 125 NZ LYS L 183 2.09 REMARK 500 O HOH L 341 O HOH L 400 2.10 REMARK 500 OH TYR L 87 O HOH L 303 2.17 REMARK 500 O CYS A 281 OG SER A 287 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS H 140 CB CYS H 140 SG -0.107 REMARK 500 GLU L 143 CB GLU L 143 CG -0.245 REMARK 500 GLU L 143 CG GLU L 143 CD -0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 92 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 CYS H 140 CA - CB - SG ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG L 24 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG L 24 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG L 142 CG - CD - NE ANGL. DEV. = 12.7 DEGREES REMARK 500 GLU L 143 CB - CA - C ANGL. DEV. = -13.4 DEGREES REMARK 500 ALA L 144 N - CA - C ANGL. DEV. = -20.8 DEGREES REMARK 500 CYS A 97 CB - CA - C ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 141 CG - CD - NE ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -7.01 77.26 REMARK 500 ASP H 98 65.33 -158.95 REMARK 500 TYR H 100A -6.08 -142.47 REMARK 500 ASP H 144 61.69 70.17 REMARK 500 SER H 156 45.11 38.97 REMARK 500 THR H 160 -35.51 -130.31 REMARK 500 PRO H 213 147.00 -37.36 REMARK 500 ARG L 30 -125.06 55.96 REMARK 500 ALA L 51 -32.09 63.12 REMARK 500 ASN L 138 64.45 61.25 REMARK 500 ILE A 62 -132.88 46.98 REMARK 500 ASP A 63 1.97 -58.73 REMARK 500 ASN A 96 42.72 -145.72 REMARK 500 CYS A 97 -155.38 -137.29 REMARK 500 ASP A 104 53.15 -111.94 REMARK 500 VAL A 196 -59.64 66.34 REMARK 500 THR A 206 -166.21 -120.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TRP H 154 15.41 REMARK 500 GLU L 143 -13.04 REMARK 500 SER A 219 -13.94 REMARK 500 REMARK 500 REMARK: NULL DBREF 6OCB H 1 222 PDB 6OCB 6OCB 1 222 DBREF 6OCB L 1 214 PDB 6OCB 6OCB 1 214 DBREF 6OCB A 43 309 UNP Q91MA7 HEMA_I68A4 59 325 SEQADV 6OCB GLY A 310 UNP Q91MA7 EXPRESSION TAG SEQADV 6OCB HIS A 311 UNP Q91MA7 EXPRESSION TAG SEQADV 6OCB HIS A 312 UNP Q91MA7 EXPRESSION TAG SEQADV 6OCB HIS A 313 UNP Q91MA7 EXPRESSION TAG SEQADV 6OCB HIS A 314 UNP Q91MA7 EXPRESSION TAG SEQADV 6OCB HIS A 315 UNP Q91MA7 EXPRESSION TAG SEQADV 6OCB HIS A 316 UNP Q91MA7 EXPRESSION TAG SEQRES 1 H 235 GLN VAL GLN LEU GLU GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 235 PRO SER GLU THR LEU SER LEU THR CYS SER VAL SER GLY SEQRES 3 H 235 VAL SER VAL THR SER ASP ILE TYR TYR TRP THR TRP ILE SEQRES 4 H 235 ARG GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR SEQRES 5 H 235 ILE PHE TYR ASN GLY ASP THR ASN TYR ASN PRO SER LEU SEQRES 6 H 235 LYS SER ARG VAL THR MET SER ILE ASP THR SER LYS ASN SEQRES 7 H 235 GLU PHE SER LEU ARG LEU THR SER VAL THR ALA ALA ASP SEQRES 8 H 235 THR ALA VAL TYR PHE CYS ALA ARG GLY THR GLU ASP LEU SEQRES 9 H 235 GLY TYR CYS SER SER GLY SER CYS PRO ASN HIS TRP GLY SEQRES 10 H 235 GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 235 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 235 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 235 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 235 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 235 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 235 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 235 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 235 LYS ARG VAL GLU PRO LYS SER CYS HIS HIS HIS HIS HIS SEQRES 19 H 235 HIS SEQRES 1 L 214 ASP ILE VAL MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER ILE GLY ASP ARG VAL THR ILE THR CYS ARG PRO SER SEQRES 3 L 214 GLN ASN ILE ARG SER PHE LEU ASN TRP PHE GLN HIS LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 L 214 ASN LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR GLU PHE THR LEU THR ILE ARG SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 L 214 TYR ASN THR PRO PRO THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 A 274 VAL GLN SER SER SER THR GLY LYS ILE CYS ASN ASN PRO SEQRES 2 A 274 HIS ARG ILE LEU ASP GLY ILE ASP CYS THR LEU ILE ASP SEQRES 3 A 274 ALA LEU LEU GLY ASP PRO HIS CYS ASP VAL PHE GLN ASN SEQRES 4 A 274 GLU THR TRP ASP LEU PHE VAL GLU ARG SER LYS ALA PHE SEQRES 5 A 274 SER ASN CYS TYR PRO TYR ASP VAL PRO ASP TYR ALA SER SEQRES 6 A 274 LEU ARG SER LEU VAL ALA SER SER GLY THR LEU GLU PHE SEQRES 7 A 274 ILE THR GLU GLY PHE THR TRP THR GLY VAL THR GLN ASN SEQRES 8 A 274 GLY GLY SER ASN ALA CYS LYS ARG GLY PRO GLY SER GLY SEQRES 9 A 274 PHE PHE SER ARG LEU ASN TRP LEU THR LYS SER GLY SER SEQRES 10 A 274 THR TYR PRO VAL LEU ASN VAL THR MET PRO ASN ASN ASP SEQRES 11 A 274 ASN PHE ASP LYS LEU TYR ILE TRP GLY VAL HIS HIS PRO SEQRES 12 A 274 SER THR ASN GLN GLU GLN THR SER LEU TYR VAL GLN ALA SEQRES 13 A 274 SER GLY ARG VAL THR VAL SER THR ARG ARG SER GLN GLN SEQRES 14 A 274 THR ILE ILE PRO ASN ILE GLY SER ARG PRO TRP VAL ARG SEQRES 15 A 274 GLY LEU SER SER ARG ILE SER ILE TYR TRP THR ILE VAL SEQRES 16 A 274 LYS PRO GLY ASP VAL LEU VAL ILE ASN SER ASN GLY ASN SEQRES 17 A 274 LEU ILE ALA PRO ARG GLY TYR PHE LYS MET ARG THR GLY SEQRES 18 A 274 LYS SER SER ILE MET ARG SER ASP ALA PRO ILE ASP THR SEQRES 19 A 274 CYS ILE SER GLU CYS ILE THR PRO ASN GLY SER ILE PRO SEQRES 20 A 274 ASN ASP LYS PRO PHE GLN ASN VAL ASN LYS ILE THR TYR SEQRES 21 A 274 GLY ALA CYS PRO LYS TYR VAL GLY HIS HIS HIS HIS HIS SEQRES 22 A 274 HIS HET NAG A 701 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *345(H2 O) HELIX 1 AA1 THR H 83 THR H 87 5 5 HELIX 2 AA2 SER H 187 LEU H 189 5 3 HELIX 3 AA3 LYS H 201 ASN H 204 5 4 HELIX 4 AA4 GLN L 79 PHE L 83 5 5 HELIX 5 AA5 SER L 121 LYS L 126 1 6 HELIX 6 AA6 LYS L 183 LYS L 188 1 6 HELIX 7 AA7 THR A 65 GLY A 72 1 8 HELIX 8 AA8 ASP A 73 GLN A 80 5 8 HELIX 9 AA9 ASP A 104 GLY A 116 1 13 HELIX 10 AB1 THR A 187 VAL A 196 1 10 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 GLU H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLU H 77 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 THR H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 TYR H 34 GLN H 39 -1 N ILE H 37 O PHE H 91 SHEET 5 AA2 6 GLU H 46 PHE H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ASN H 58 N TYR H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 THR H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 HIS H 102 TRP H 103 -1 O HIS H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 PRO L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 GLU L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 SER L 14 0 SHEET 2 AA8 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA8 6 LEU L 33 HIS L 38 -1 N PHE L 36 O TYR L 87 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 AA8 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 SER L 14 0 SHEET 2 AA9 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 ALA L 144 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 HIS L 198 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 AB3 2 ILE A 51 ASN A 54 0 SHEET 2 AB3 2 ILE A 274 ILE A 278 1 O ASP A 275 N ASN A 53 SHEET 1 AB4 3 ILE A 58 ASP A 60 0 SHEET 2 AB4 3 LEU A 86 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 AB4 3 SER A 266 ARG A 269 1 O MET A 268 N GLU A 89 SHEET 1 AB5 5 TYR A 100 ASP A 101 0 SHEET 2 AB5 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AB5 5 LYS A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 AB5 5 GLY A 256 LYS A 259 -1 O PHE A 258 N LEU A 177 SHEET 5 AB5 5 PHE A 120 THR A 122 -1 N ILE A 121 O TYR A 257 SHEET 1 AB6 5 TYR A 100 ASP A 101 0 SHEET 2 AB6 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AB6 5 LYS A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 AB6 5 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 AB6 5 LEU A 151 TRP A 153 -1 N ASN A 152 O ALA A 253 SHEET 1 AB7 2 VAL A 130 THR A 131 0 SHEET 2 AB7 2 THR A 155 LYS A 156 -1 O THR A 155 N THR A 131 SHEET 1 AB8 2 SER A 136 ARG A 141 0 SHEET 2 AB8 2 GLY A 144 GLY A 146 -1 O GLY A 146 N SER A 136 SHEET 1 AB9 4 LEU A 164 PRO A 169 0 SHEET 2 AB9 4 VAL A 242 SER A 247 -1 O SER A 247 N LEU A 164 SHEET 3 AB9 4 VAL A 202 SER A 205 -1 N SER A 205 O VAL A 244 SHEET 4 AB9 4 GLN A 210 ILE A 213 -1 O ILE A 213 N VAL A 202 SHEET 1 AC1 2 ILE A 282 THR A 283 0 SHEET 2 AC1 2 GLY A 286 SER A 287 -1 O GLY A 286 N THR A 283 SHEET 1 AC2 2 PHE A 294 GLN A 295 0 SHEET 2 AC2 2 LYS A 307 TYR A 308 1 O LYS A 307 N GLN A 295 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.15 SSBOND 2 CYS H 100B CYS H 100G 1555 1555 2.08 SSBOND 3 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.12 SSBOND 5 CYS L 134 CYS L 194 1555 1555 2.05 SSBOND 6 CYS A 52 CYS A 277 1555 1555 2.01 SSBOND 7 CYS A 64 CYS A 76 1555 1555 2.15 SSBOND 8 CYS A 97 CYS A 139 1555 1555 2.03 SSBOND 9 CYS A 281 CYS A 305 1555 1555 2.03 LINK ND2 ASN A 165 C1 NAG A 701 1555 1555 1.45 CISPEP 1 PHE H 146 PRO H 147 0 -8.79 CISPEP 2 GLU H 148 PRO H 149 0 -2.26 CISPEP 3 SER L 7 PRO L 8 0 0.25 CISPEP 4 THR L 94 PRO L 95 0 -2.68 CISPEP 5 TYR L 140 PRO L 141 0 2.75 CISPEP 6 ASN A 54 PRO A 55 0 5.19 CRYST1 84.554 84.554 271.737 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011827 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003680 0.00000