HEADER METAL BINDING PROTEIN 25-MAR-19 6OD0
TITLE STRUCTURE OF HUMAN CIB1 IN COMPLEX WITH PEPTIDE INHIBITOR UNC10245092
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CALCIUM AND INTEGRIN-BINDING PROTEIN 1;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: CIB,CALCIUM- AND INTEGRIN-BINDING PROTEIN,CIBP,CALMYRIN,DNA-
COMPND 5 PKCS-INTERACTING PROTEIN,KINASE-INTERACTING PROTEIN,KIP,SNK-
COMPND 6 INTERACTING PROTEIN 2-28,SIP2-28;
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: PEPTIDE INHIBITOR UNC10245092;
COMPND 10 CHAIN: D, E;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: CIB1, CIB, KIP, PRKDCIP;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 MOL_ID: 2;
SOURCE 9 SYNTHETIC: YES;
SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 11 ORGANISM_COMMON: HUMAN;
SOURCE 12 ORGANISM_TAXID: 9606
KEYWDS CIB1, CANCER, METAL BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR A.C.PUHL,A.S.GODOY,K.PEARCE
REVDAT 3 11-OCT-23 6OD0 1 REMARK
REVDAT 2 07-OCT-20 6OD0 1 JRNL LINK
REVDAT 1 25-MAR-20 6OD0 0
JRNL AUTH A.C.PUHL,J.W.BOGART,V.A.HABERMAN,J.E.LARSON,A.S.GODOY,
JRNL AUTH 2 J.L.NORRIS-DROUIN,S.H.CHOLENSKY,T.M.LEISNER,S.V.FRYE,
JRNL AUTH 3 L.V.PARISE,A.A.BOWERS,K.H.PEARCE
JRNL TITL DISCOVERY AND CHARACTERIZATION OF PEPTIDE INHIBITORS FOR
JRNL TITL 2 CALCIUM AND INTEGRIN BINDING PROTEIN 1.
JRNL REF ACS CHEM.BIOL. V. 15 1505 2020
JRNL REFN ESSN 1554-8937
JRNL PMID 32383857
JRNL DOI 10.1021/ACSCHEMBIO.0C00144
REMARK 2
REMARK 2 RESOLUTION. 2.15 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.3
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.81
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7
REMARK 3 NUMBER OF REFLECTIONS : 20253
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.189
REMARK 3 R VALUE (WORKING SET) : 0.187
REMARK 3 FREE R VALUE : 0.229
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240
REMARK 3 FREE R VALUE TEST SET COUNT : 1062
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 10
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.27
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.37
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2456
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2160
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2308
REMARK 3 BIN R VALUE (WORKING SET) : 0.2150
REMARK 3 BIN FREE R VALUE : 0.2410
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.03
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 148
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2684
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 6
REMARK 3 SOLVENT ATOMS : 192
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 39.74
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.34
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.63440
REMARK 3 B22 (A**2) : -0.89210
REMARK 3 B33 (A**2) : 1.52640
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -1.20430
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.239
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.189
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.235
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.189
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2734 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 3702 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 928 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 65 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 403 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2734 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 370 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3228 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.009
REMARK 3 BOND ANGLES (DEGREES) : 0.89
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.19
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.02
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 13.6989 4.1842 71.8013
REMARK 3 T TENSOR
REMARK 3 T11: -0.0666 T22: -0.0586
REMARK 3 T33: -0.0614 T12: -0.0070
REMARK 3 T13: 0.0054 T23: 0.0196
REMARK 3 L TENSOR
REMARK 3 L11: 1.7818 L22: 0.4324
REMARK 3 L33: 2.4408 L12: 0.3571
REMARK 3 L13: 1.5917 L23: -0.0528
REMARK 3 S TENSOR
REMARK 3 S11: -0.0851 S12: 0.0828 S13: -0.0858
REMARK 3 S21: -0.0578 S22: 0.0639 S23: -0.0163
REMARK 3 S31: -0.1008 S32: 0.0928 S33: 0.0211
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 19.3008 21.6599 38.6192
REMARK 3 T TENSOR
REMARK 3 T11: -0.0364 T22: -0.0940
REMARK 3 T33: -0.0303 T12: -0.0239
REMARK 3 T13: 0.0029 T23: 0.0011
REMARK 3 L TENSOR
REMARK 3 L11: 1.8050 L22: 2.1896
REMARK 3 L33: 0.6154 L12: -1.6275
REMARK 3 L13: 0.3725 L23: -0.4061
REMARK 3 S TENSOR
REMARK 3 S11: -0.0434 S12: -0.0618 S13: -0.0807
REMARK 3 S21: 0.0998 S22: 0.0427 S23: 0.1268
REMARK 3 S31: -0.0598 S32: 0.0701 S33: 0.0007
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6OD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-19.
REMARK 100 THE DEPOSITION ID IS D_1000240482.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 05-MAR-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.8
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 21-ID-G
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20253
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150
REMARK 200 RESOLUTION RANGE LOW (A) : 34.830
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2
REMARK 200 DATA REDUNDANCY : 3.500
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 1XO5
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 51.30
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 137.5 MM CALCIUM ACETATE, 16 % PEG
REMARK 280 3350, 20 MM BIS-TRIS PROPANE (PH 6.8), VAPOR DIFFUSION,
REMARK 280 TEMPERATURE 294K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.98300
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 9740 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 9770 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 GLY A 2
REMARK 465 GLY A 3
REMARK 465 SER A 4
REMARK 465 GLY A 5
REMARK 465 SER A 6
REMARK 465 ARG A 7
REMARK 465 LEU A 8
REMARK 465 SER A 9
REMARK 465 LYS A 10
REMARK 465 GLU A 11
REMARK 465 LEU A 12
REMARK 465 LEU A 13
REMARK 465 ALA A 14
REMARK 465 GLU A 15
REMARK 465 TYR A 16
REMARK 465 GLN A 17
REMARK 465 ASP A 18
REMARK 465 LEU A 19
REMARK 465 THR A 20
REMARK 465 ASP A 141
REMARK 465 SER A 185
REMARK 465 SER A 186
REMARK 465 PHE A 187
REMARK 465 LYS A 188
REMARK 465 ILE A 189
REMARK 465 VAL A 190
REMARK 465 LEU A 191
REMARK 465 MET B 1
REMARK 465 GLY B 2
REMARK 465 GLY B 3
REMARK 465 SER B 4
REMARK 465 GLY B 5
REMARK 465 SER B 6
REMARK 465 ARG B 7
REMARK 465 LEU B 8
REMARK 465 SER B 9
REMARK 465 LYS B 10
REMARK 465 GLU B 11
REMARK 465 LEU B 12
REMARK 465 LEU B 13
REMARK 465 ALA B 14
REMARK 465 GLU B 15
REMARK 465 TYR B 16
REMARK 465 GLN B 17
REMARK 465 ASP B 18
REMARK 465 LEU B 19
REMARK 465 THR B 20
REMARK 465 GLU B 140
REMARK 465 ASP B 141
REMARK 465 ALA B 184
REMARK 465 SER B 185
REMARK 465 SER B 186
REMARK 465 PHE B 187
REMARK 465 LYS B 188
REMARK 465 ILE B 189
REMARK 465 VAL B 190
REMARK 465 LEU B 191
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 24 CG CD CE NZ
REMARK 470 GLU A 41 CG CD OE1 OE2
REMARK 470 GLU A 46 CG CD OE1 OE2
REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 56 CG CD OE1 OE2
REMARK 470 GLU A 63 CG CD OE1 OE2
REMARK 470 GLU A 71 CG CD OE1 OE2
REMARK 470 ASP A 84 CG OD1 OD2
REMARK 470 ASP A 105 CG OD1 OD2
REMARK 470 GLU A 138 CG CD OE1 OE2
REMARK 470 GLU A 140 CG CD OE1 OE2
REMARK 470 THR A 142 OG1 CG2
REMARK 470 SER A 147 OG
REMARK 470 LYS A 150 CG CD CE NZ
REMARK 470 GLU A 159 CG CD OE1 OE2
REMARK 470 ARG A 179 CG CD NE CZ NH1 NH2
REMARK 470 PHE A 183 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 LYS B 24 CG CD CE NZ
REMARK 470 GLN B 25 CG CD OE1 NE2
REMARK 470 GLU B 36 CG CD OE1 OE2
REMARK 470 GLU B 41 CG CD OE1 OE2
REMARK 470 GLU B 46 CG CD OE1 OE2
REMARK 470 LYS B 65 CE NZ
REMARK 470 LYS B 83 CE NZ
REMARK 470 ASP B 105 CG OD1 OD2
REMARK 470 GLU B 138 CG CD OE1 OE2
REMARK 470 THR B 142 OG1 CG2
REMARK 470 ARG B 143 CD NE CZ NH1 NH2
REMARK 470 LYS B 150 CG CD CE NZ
REMARK 470 GLU B 159 CG CD OE1 OE2
REMARK 470 ASP B 182 CG OD1 OD2
REMARK 470 PHE B 183 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 LYS E 12 CG CD CE NZ
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 GLU B 158 CD
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 377 DISTANCE = 6.07 ANGSTROMS
REMARK 525 HOH A 378 DISTANCE = 6.17 ANGSTROMS
REMARK 525 HOH A 379 DISTANCE = 6.24 ANGSTROMS
REMARK 525 HOH A 380 DISTANCE = 6.46 ANGSTROMS
REMARK 525 HOH A 381 DISTANCE = 7.01 ANGSTROMS
REMARK 525 HOH A 382 DISTANCE = 8.49 ANGSTROMS
REMARK 525 HOH A 383 DISTANCE = 8.88 ANGSTROMS
REMARK 525 HOH B 390 DISTANCE = 6.80 ANGSTROMS
REMARK 525 HOH B 391 DISTANCE = 7.27 ANGSTROMS
REMARK 525 HOH B 392 DISTANCE = 7.39 ANGSTROMS
REMARK 525 HOH B 393 DISTANCE = 8.94 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 201 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 116 OD1
REMARK 620 2 ASP A 118 OD1 84.1
REMARK 620 3 ASP A 120 OD1 93.3 82.8
REMARK 620 4 THR A 122 O 83.9 158.4 80.1
REMARK 620 5 ASP A 127 OD2 103.2 118.3 154.2 82.0
REMARK 620 6 HOH A 329 O 172.4 102.2 83.4 88.8 77.8
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 203 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 118 OD2
REMARK 620 2 HOH A 314 O 75.7
REMARK 620 3 HOH B 317 O 97.1 171.1
REMARK 620 4 HOH B 346 O 139.1 90.8 98.1
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 202 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 161 OD1
REMARK 620 2 ASP A 163 OD1 77.8
REMARK 620 3 ASP A 165 OD1 91.6 79.6
REMARK 620 4 THR A 167 O 79.5 150.4 82.4
REMARK 620 5 GLU A 172 OE1 101.2 125.9 153.2 77.1
REMARK 620 6 GLU A 172 OE2 93.0 75.9 153.4 124.2 50.0
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA B 201 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP B 116 OD1
REMARK 620 2 ASP B 118 OD1 79.0
REMARK 620 3 ASP B 120 OD1 88.6 80.3
REMARK 620 4 THR B 122 O 81.2 155.0 84.2
REMARK 620 5 ASP B 127 OD2 105.7 113.5 161.5 86.4
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA B 202 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP B 161 OD1
REMARK 620 2 ASP B 163 OD1 80.0
REMARK 620 3 ASP B 165 OD1 87.4 83.4
REMARK 620 4 THR B 167 O 80.7 155.3 80.3
REMARK 620 5 GLU B 172 OE1 106.4 120.0 154.1 80.5
REMARK 620 6 GLU B 172 OE2 94.7 69.6 152.1 127.5 50.5
REMARK 620 7 HOH B 335 O 165.2 107.1 80.7 88.6 81.6 99.9
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA B 203 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH B 379 O
REMARK 620 2 HOH E 102 O 94.5
REMARK 620 N 1
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 203
DBREF 6OD0 A 1 191 UNP Q99828 CIB1_HUMAN 1 191
DBREF 6OD0 B 1 191 UNP Q99828 CIB1_HUMAN 1 191
DBREF 6OD0 D 5 16 PDB 6OD0 6OD0 5 16
DBREF 6OD0 E 5 16 PDB 6OD0 6OD0 5 16
SEQRES 1 A 191 MET GLY GLY SER GLY SER ARG LEU SER LYS GLU LEU LEU
SEQRES 2 A 191 ALA GLU TYR GLN ASP LEU THR PHE LEU THR LYS GLN GLU
SEQRES 3 A 191 ILE LEU LEU ALA HIS ARG ARG PHE CYS GLU LEU LEU PRO
SEQRES 4 A 191 GLN GLU GLN ARG SER VAL GLU SER SER LEU ARG ALA GLN
SEQRES 5 A 191 VAL PRO PHE GLU GLN ILE LEU SER LEU PRO GLU LEU LYS
SEQRES 6 A 191 ALA ASN PRO PHE LYS GLU ARG ILE CYS ARG VAL PHE SER
SEQRES 7 A 191 THR SER PRO ALA LYS ASP SER LEU SER PHE GLU ASP PHE
SEQRES 8 A 191 LEU ASP LEU LEU SER VAL PHE SER ASP THR ALA THR PRO
SEQRES 9 A 191 ASP ILE LYS SER HIS TYR ALA PHE ARG ILE PHE ASP PHE
SEQRES 10 A 191 ASP ASP ASP GLY THR LEU ASN ARG GLU ASP LEU SER ARG
SEQRES 11 A 191 LEU VAL ASN CYS LEU THR GLY GLU GLY GLU ASP THR ARG
SEQRES 12 A 191 LEU SER ALA SER GLU MET LYS GLN LEU ILE ASP ASN ILE
SEQRES 13 A 191 LEU GLU GLU SER ASP ILE ASP ARG ASP GLY THR ILE ASN
SEQRES 14 A 191 LEU SER GLU PHE GLN HIS VAL ILE SER ARG SER PRO ASP
SEQRES 15 A 191 PHE ALA SER SER PHE LYS ILE VAL LEU
SEQRES 1 B 191 MET GLY GLY SER GLY SER ARG LEU SER LYS GLU LEU LEU
SEQRES 2 B 191 ALA GLU TYR GLN ASP LEU THR PHE LEU THR LYS GLN GLU
SEQRES 3 B 191 ILE LEU LEU ALA HIS ARG ARG PHE CYS GLU LEU LEU PRO
SEQRES 4 B 191 GLN GLU GLN ARG SER VAL GLU SER SER LEU ARG ALA GLN
SEQRES 5 B 191 VAL PRO PHE GLU GLN ILE LEU SER LEU PRO GLU LEU LYS
SEQRES 6 B 191 ALA ASN PRO PHE LYS GLU ARG ILE CYS ARG VAL PHE SER
SEQRES 7 B 191 THR SER PRO ALA LYS ASP SER LEU SER PHE GLU ASP PHE
SEQRES 8 B 191 LEU ASP LEU LEU SER VAL PHE SER ASP THR ALA THR PRO
SEQRES 9 B 191 ASP ILE LYS SER HIS TYR ALA PHE ARG ILE PHE ASP PHE
SEQRES 10 B 191 ASP ASP ASP GLY THR LEU ASN ARG GLU ASP LEU SER ARG
SEQRES 11 B 191 LEU VAL ASN CYS LEU THR GLY GLU GLY GLU ASP THR ARG
SEQRES 12 B 191 LEU SER ALA SER GLU MET LYS GLN LEU ILE ASP ASN ILE
SEQRES 13 B 191 LEU GLU GLU SER ASP ILE ASP ARG ASP GLY THR ILE ASN
SEQRES 14 B 191 LEU SER GLU PHE GLN HIS VAL ILE SER ARG SER PRO ASP
SEQRES 15 B 191 PHE ALA SER SER PHE LYS ILE VAL LEU
SEQRES 1 D 12 SER PHE TRP TYR GLY ALA MET LYS ALA LEU TYR GLY
SEQRES 1 E 12 SER PHE TRP TYR GLY ALA MET LYS ALA LEU TYR GLY
HET CA A 201 1
HET CA A 202 1
HET CA A 203 1
HET CA B 201 1
HET CA B 202 1
HET CA B 203 1
HETNAM CA CALCIUM ION
FORMUL 5 CA 6(CA 2+)
FORMUL 11 HOH *192(H2 O)
HELIX 1 AA1 THR A 23 GLU A 36 1 14
HELIX 2 AA2 LEU A 37 LEU A 38 5 2
HELIX 3 AA3 PRO A 39 ARG A 43 5 5
HELIX 4 AA4 SER A 44 ALA A 51 1 8
HELIX 5 AA5 PHE A 55 LEU A 59 1 5
HELIX 6 AA6 LEU A 61 ALA A 66 1 6
HELIX 7 AA7 PHE A 69 SER A 78 1 10
HELIX 8 AA8 SER A 87 SER A 99 1 13
HELIX 9 AA9 THR A 103 ASP A 116 1 14
HELIX 10 AB1 ASN A 124 GLY A 137 1 14
HELIX 11 AB2 SER A 145 ASP A 161 1 17
HELIX 12 AB3 ASN A 169 ARG A 179 1 11
HELIX 13 AB4 THR B 23 LEU B 37 1 15
HELIX 14 AB5 LEU B 38 ARG B 43 5 6
HELIX 15 AB6 SER B 44 ALA B 51 1 8
HELIX 16 AB7 PHE B 55 LEU B 59 1 5
HELIX 17 AB8 LEU B 61 ALA B 66 1 6
HELIX 18 AB9 PHE B 69 SER B 78 1 10
HELIX 19 AC1 SER B 87 SER B 99 1 13
HELIX 20 AC2 THR B 103 ASP B 116 1 14
HELIX 21 AC3 ASN B 124 GLY B 137 1 14
HELIX 22 AC4 SER B 145 ASP B 161 1 17
HELIX 23 AC5 ASN B 169 ARG B 179 1 11
HELIX 24 AC6 PHE D 6 GLY D 16 1 11
HELIX 25 AC7 PHE E 6 GLY E 16 1 11
SHEET 1 AA1 2 VAL A 53 PRO A 54 0
SHEET 2 AA1 2 SER A 85 LEU A 86 -1 O LEU A 86 N VAL A 53
SHEET 1 AA2 2 VAL B 53 PRO B 54 0
SHEET 2 AA2 2 SER B 85 LEU B 86 -1 O LEU B 86 N VAL B 53
LINK OD1 ASP A 116 CA CA A 201 1555 1555 2.25
LINK OD1 ASP A 118 CA CA A 201 1555 1555 2.22
LINK OD2 ASP A 118 CA CA A 203 1555 1555 2.50
LINK OD1 ASP A 120 CA CA A 201 1555 1555 2.33
LINK O THR A 122 CA CA A 201 1555 1555 2.33
LINK OD2 ASP A 127 CA CA A 201 1555 1555 2.27
LINK OD1 ASP A 161 CA CA A 202 1555 1555 2.29
LINK OD1 ASP A 163 CA CA A 202 1555 1555 2.28
LINK OD1 ASP A 165 CA CA A 202 1555 1555 2.57
LINK O THR A 167 CA CA A 202 1555 1555 2.33
LINK OE1 GLU A 172 CA CA A 202 1555 1555 2.63
LINK OE2 GLU A 172 CA CA A 202 1555 1555 2.56
LINK CA CA A 201 O HOH A 329 1555 1555 2.26
LINK CA CA A 203 O HOH A 314 1555 1555 2.37
LINK CA CA A 203 O HOH B 317 1555 2647 2.74
LINK CA CA A 203 O HOH B 346 1555 2647 2.79
LINK OD1 ASP B 116 CA CA B 201 1555 1555 2.38
LINK OD1 ASP B 118 CA CA B 201 1555 1555 2.24
LINK OD1 ASP B 120 CA CA B 201 1555 1555 2.38
LINK O THR B 122 CA CA B 201 1555 1555 2.23
LINK OD2 ASP B 127 CA CA B 201 1555 1555 2.32
LINK OD1 ASP B 161 CA CA B 202 1555 1555 2.21
LINK OD1 ASP B 163 CA CA B 202 1555 1555 2.31
LINK OD1 ASP B 165 CA CA B 202 1555 1555 2.42
LINK O THR B 167 CA CA B 202 1555 1555 2.31
LINK OE1 GLU B 172 CA CA B 202 1555 1555 2.58
LINK OE2 GLU B 172 CA CA B 202 1555 1555 2.56
LINK CA CA B 202 O HOH B 335 1555 1555 2.14
LINK CA CA B 203 O HOH B 379 1555 1555 3.05
LINK CA CA B 203 O HOH E 102 1555 1555 2.91
SITE 1 AC1 6 ASP A 116 ASP A 118 ASP A 120 THR A 122
SITE 2 AC1 6 ASP A 127 HOH A 329
SITE 1 AC2 5 ASP A 161 ASP A 163 ASP A 165 THR A 167
SITE 2 AC2 5 GLU A 172
SITE 1 AC3 2 ASP A 118 HOH A 314
SITE 1 AC4 5 ASP B 116 ASP B 118 ASP B 120 THR B 122
SITE 2 AC4 5 ASP B 127
SITE 1 AC5 6 ASP B 161 ASP B 163 ASP B 165 THR B 167
SITE 2 AC5 6 GLU B 172 HOH B 335
SITE 1 AC6 3 PHE B 98 HOH B 379 HOH E 102
CRYST1 34.858 85.966 67.287 90.00 91.91 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.028688 0.000000 0.000957 0.00000
SCALE2 0.000000 0.011633 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014870 0.00000