HEADER SIGNALING PROTEIN 25-MAR-19 6OD1 TITLE IRAD-BOUND TO RSSB D58P VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATOR OF RPOS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ANTI-ADAPTER PROTEIN IRAD; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI 907672; SOURCE 3 ORGANISM_TAXID: 1268982; SOURCE 4 GENE: RSSB, HMPREF1595_01509; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 10 ORGANISM_TAXID: 83333; SOURCE 11 STRAIN: K12; SOURCE 12 GENE: IRAD, YJID, B4326, JW5782; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS RESPONSE REGULATOR, CLPXP ADAPTOR, ANTI-ADAPTOR, DNA DAMAGE, GP25, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.M.DEACONESCU,V.DORICH REVDAT 4 13-MAR-24 6OD1 1 REMARK REVDAT 3 01-JAN-20 6OD1 1 REMARK REVDAT 2 12-JUN-19 6OD1 1 JRNL REVDAT 1 24-APR-19 6OD1 0 JRNL AUTH V.DORICH,C.BRUGGER,A.TRIPATHI,J.R.HOSKINS,S.TONG, JRNL AUTH 2 M.M.SUHANOVSKY,A.SASTRY,S.WICKNER,S.GOTTESMAN,A.M.DEACONESCU JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF A RESPONSE REGULATOR OF JRNL TITL 2 SIGMASSTABILITY BY A CLPXP ANTIADAPTOR. JRNL REF GENES DEV. V. 33 718 2019 JRNL REFN ISSN 0890-9369 JRNL PMID 30975721 JRNL DOI 10.1101/GAD.320168.118 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 32605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.570 REMARK 3 FREE R VALUE TEST SET COUNT : 1816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0830 - 4.6966 0.99 2687 158 0.1835 0.2161 REMARK 3 2 4.6966 - 3.7303 1.00 2506 148 0.1645 0.2252 REMARK 3 3 3.7303 - 3.2595 0.97 2416 143 0.1911 0.2261 REMARK 3 4 3.2595 - 2.9618 0.96 2354 138 0.2153 0.2712 REMARK 3 5 2.9618 - 2.7497 0.97 2368 139 0.2175 0.2493 REMARK 3 6 2.7497 - 2.5877 0.96 2341 138 0.2255 0.2796 REMARK 3 7 2.5877 - 2.4581 0.97 2324 137 0.2294 0.2898 REMARK 3 8 2.4581 - 2.3512 0.97 2350 138 0.2288 0.2875 REMARK 3 9 2.3512 - 2.2607 0.98 2338 138 0.2264 0.2628 REMARK 3 10 2.2607 - 2.1827 0.97 2318 137 0.2414 0.3008 REMARK 3 11 2.1827 - 2.1145 0.97 2320 137 0.2549 0.3091 REMARK 3 12 2.1145 - 2.0541 0.96 2289 135 0.2682 0.3159 REMARK 3 13 2.0541 - 2.0000 0.92 2178 130 0.2882 0.2966 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3496 REMARK 3 ANGLE : 0.938 4752 REMARK 3 CHIRALITY : 0.057 548 REMARK 3 PLANARITY : 0.006 615 REMARK 3 DIHEDRAL : 5.063 2112 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3655 5.2652 128.6252 REMARK 3 T TENSOR REMARK 3 T11: 0.3574 T22: 0.6268 REMARK 3 T33: 0.3459 T12: 0.0032 REMARK 3 T13: -0.1002 T23: 0.0534 REMARK 3 L TENSOR REMARK 3 L11: 4.5175 L22: 2.3937 REMARK 3 L33: 5.2104 L12: 1.3573 REMARK 3 L13: -0.6119 L23: -1.8564 REMARK 3 S TENSOR REMARK 3 S11: -0.1601 S12: 0.4418 S13: 0.2315 REMARK 3 S21: -0.1683 S22: 0.3571 S23: 0.2875 REMARK 3 S31: -0.1237 S32: -0.8337 S33: -0.1427 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6014 17.8661 135.1050 REMARK 3 T TENSOR REMARK 3 T11: 0.6561 T22: 0.5314 REMARK 3 T33: 0.4310 T12: 0.0225 REMARK 3 T13: -0.1537 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 5.0053 L22: 6.0468 REMARK 3 L33: 6.1172 L12: 1.2106 REMARK 3 L13: -0.1269 L23: 2.4782 REMARK 3 S TENSOR REMARK 3 S11: -0.0509 S12: 0.0029 S13: 0.8862 REMARK 3 S21: 0.6674 S22: -0.6540 S23: 0.2876 REMARK 3 S31: -0.7946 S32: -0.6108 S33: 0.6584 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.7757 19.9726 152.9295 REMARK 3 T TENSOR REMARK 3 T11: 0.6624 T22: 0.4185 REMARK 3 T33: 0.4243 T12: 0.1538 REMARK 3 T13: -0.0973 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 5.2811 L22: 4.5519 REMARK 3 L33: 6.6669 L12: -2.8517 REMARK 3 L13: 4.6142 L23: -3.0185 REMARK 3 S TENSOR REMARK 3 S11: -0.6133 S12: -0.4288 S13: 0.6747 REMARK 3 S21: 0.1611 S22: -0.0280 S23: -0.0453 REMARK 3 S31: -1.4447 S32: -0.6823 S33: 0.4187 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9534 7.0640 146.2164 REMARK 3 T TENSOR REMARK 3 T11: 0.2864 T22: 0.2718 REMARK 3 T33: 0.3225 T12: -0.0491 REMARK 3 T13: -0.0699 T23: 0.0954 REMARK 3 L TENSOR REMARK 3 L11: 2.7976 L22: 1.7892 REMARK 3 L33: 4.9828 L12: -1.3052 REMARK 3 L13: 2.2825 L23: -0.5972 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: -0.1178 S13: -0.1226 REMARK 3 S21: -0.0409 S22: 0.1220 S23: 0.2350 REMARK 3 S31: -0.2855 S32: -0.2579 S33: -0.0332 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3487 8.5327 110.1636 REMARK 3 T TENSOR REMARK 3 T11: 0.6801 T22: 0.7944 REMARK 3 T33: 0.5571 T12: 0.0417 REMARK 3 T13: 0.0517 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 9.2807 L22: 2.5967 REMARK 3 L33: 4.7498 L12: 3.8749 REMARK 3 L13: 0.4898 L23: 2.3032 REMARK 3 S TENSOR REMARK 3 S11: -1.1928 S12: 1.4370 S13: -0.2352 REMARK 3 S21: -0.9656 S22: 0.8594 S23: -0.4543 REMARK 3 S31: 0.2285 S32: 0.3493 S33: 0.4172 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1102 11.0553 107.8090 REMARK 3 T TENSOR REMARK 3 T11: 0.7047 T22: 1.0689 REMARK 3 T33: 0.4580 T12: -0.0326 REMARK 3 T13: -0.1500 T23: 0.0920 REMARK 3 L TENSOR REMARK 3 L11: 2.8968 L22: 5.9263 REMARK 3 L33: 3.8866 L12: -2.2494 REMARK 3 L13: 2.7356 L23: -4.4477 REMARK 3 S TENSOR REMARK 3 S11: 0.1387 S12: 0.5004 S13: -0.0210 REMARK 3 S21: -1.5244 S22: 0.4595 S23: 0.2534 REMARK 3 S31: 0.2179 S32: -0.4945 S33: -0.2187 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2859 13.8317 118.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.4072 T22: 0.5270 REMARK 3 T33: 0.3470 T12: -0.0390 REMARK 3 T13: -0.1330 T23: 0.1625 REMARK 3 L TENSOR REMARK 3 L11: 9.7601 L22: 5.1326 REMARK 3 L33: 4.2746 L12: -3.7600 REMARK 3 L13: 3.5464 L23: -0.0809 REMARK 3 S TENSOR REMARK 3 S11: 0.0372 S12: 0.0136 S13: 0.4010 REMARK 3 S21: -0.3215 S22: 0.0879 S23: 0.1518 REMARK 3 S31: -0.1294 S32: -0.4021 S33: -0.1217 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8832 13.4926 118.8253 REMARK 3 T TENSOR REMARK 3 T11: 0.4867 T22: 0.5393 REMARK 3 T33: 0.4092 T12: 0.0602 REMARK 3 T13: -0.0520 T23: 0.1733 REMARK 3 L TENSOR REMARK 3 L11: 5.6579 L22: 4.9548 REMARK 3 L33: 5.1751 L12: -4.2561 REMARK 3 L13: 5.3896 L23: -3.9567 REMARK 3 S TENSOR REMARK 3 S11: 0.1709 S12: 0.6800 S13: 0.7486 REMARK 3 S21: -0.2814 S22: 0.0050 S23: -0.3531 REMARK 3 S31: -0.2512 S32: -0.1699 S33: 0.1489 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0275 24.0615 104.2987 REMARK 3 T TENSOR REMARK 3 T11: 1.5451 T22: 1.1138 REMARK 3 T33: 1.2751 T12: 0.1549 REMARK 3 T13: -0.3328 T23: 0.3881 REMARK 3 L TENSOR REMARK 3 L11: 8.9786 L22: 3.0780 REMARK 3 L33: 3.2515 L12: 5.0848 REMARK 3 L13: 5.1063 L23: 3.0943 REMARK 3 S TENSOR REMARK 3 S11: -1.1249 S12: 1.6769 S13: 3.0415 REMARK 3 S21: -3.2810 S22: -0.2483 S23: 0.5831 REMARK 3 S31: -2.4896 S32: -0.6289 S33: 1.4233 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.6132 18.4572 113.4720 REMARK 3 T TENSOR REMARK 3 T11: 0.6548 T22: 0.8319 REMARK 3 T33: 0.3848 T12: 0.0113 REMARK 3 T13: -0.0533 T23: 0.2869 REMARK 3 L TENSOR REMARK 3 L11: 4.2242 L22: 7.3623 REMARK 3 L33: 4.6823 L12: -4.9247 REMARK 3 L13: 4.3606 L23: -4.5362 REMARK 3 S TENSOR REMARK 3 S11: -0.4257 S12: 1.0856 S13: 0.8604 REMARK 3 S21: 0.4230 S22: 0.4811 S23: 0.1245 REMARK 3 S31: -1.5130 S32: -0.5064 S33: 0.9091 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5119 14.8832 121.6137 REMARK 3 T TENSOR REMARK 3 T11: 0.7206 T22: 0.8716 REMARK 3 T33: 0.7034 T12: -0.2000 REMARK 3 T13: -0.1799 T23: 0.2621 REMARK 3 L TENSOR REMARK 3 L11: 1.4275 L22: 4.5095 REMARK 3 L33: 6.0028 L12: 1.1067 REMARK 3 L13: -1.2029 L23: -4.5635 REMARK 3 S TENSOR REMARK 3 S11: -0.3370 S12: -0.0717 S13: 1.0046 REMARK 3 S21: 0.4544 S22: -0.5384 S23: -1.5389 REMARK 3 S31: -1.8914 S32: 1.8954 S33: 0.4901 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.9030 16.5959 107.7021 REMARK 3 T TENSOR REMARK 3 T11: 0.7576 T22: 1.0052 REMARK 3 T33: 0.5409 T12: -0.0983 REMARK 3 T13: -0.1430 T23: 0.2234 REMARK 3 L TENSOR REMARK 3 L11: 5.2691 L22: 1.1617 REMARK 3 L33: 7.4685 L12: 2.2212 REMARK 3 L13: 6.0696 L23: 2.7198 REMARK 3 S TENSOR REMARK 3 S11: -0.6977 S12: 0.2844 S13: -0.4436 REMARK 3 S21: -0.5064 S22: 0.2859 S23: 0.0270 REMARK 3 S31: -0.9517 S32: -0.5645 S33: 0.2181 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5542 13.6063 100.4474 REMARK 3 T TENSOR REMARK 3 T11: 0.8287 T22: 1.5874 REMARK 3 T33: 0.5795 T12: 0.0917 REMARK 3 T13: -0.1027 T23: 0.2318 REMARK 3 L TENSOR REMARK 3 L11: 0.1386 L22: 5.7911 REMARK 3 L33: 0.0574 L12: -0.8920 REMARK 3 L13: -0.0908 L23: 0.5927 REMARK 3 S TENSOR REMARK 3 S11: -0.3616 S12: 1.9072 S13: 1.2004 REMARK 3 S21: -2.8958 S22: -0.6422 S23: -0.4105 REMARK 3 S31: -0.2324 S32: -0.0188 S33: 0.7283 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3053 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.950 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, PEG 8000, TRIS PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 150.14900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.96900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.96900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 225.22350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.96900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.96900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.07450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.96900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.96900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 225.22350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.96900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.96900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.07450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 150.14900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 135 REMARK 465 GLU A 136 REMARK 465 GLU A 137 REMARK 465 MET B 16 REMARK 465 LYS B 17 REMARK 465 THR B 18 REMARK 465 THR B 125 REMARK 465 LEU B 126 REMARK 465 GLU B 127 REMARK 465 ASN B 128 REMARK 465 VAL B 129 REMARK 465 SER B 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 151 CD LYS A 155 2.17 REMARK 500 NE2 GLN A 9 O HOH A 401 2.17 REMARK 500 O VAL A 179 O HOH A 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 63 -45.69 66.14 REMARK 500 ASP A 112 37.77 71.63 REMARK 500 LYS A 183 -88.07 -26.28 REMARK 500 GLU A 290 -80.52 -74.69 REMARK 500 ASP B 117 147.48 -172.57 REMARK 500 ASN B 118 73.24 44.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 183 PRO A 184 144.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF IRAD THAT WAS EXPRESSED IN ECOLI WAS: REMARK 999 MGSSHHHHHHSSGLEVLFQGPHMKTSSLRKSVCSDLLTLFNSPHSALPSLLVSGMPEWQVHNPSDKHL REMARK 999 QSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISLEIMLYHDDEPLTFDLVWDNGGWRSATLENV REMARK 999 S IRAD PROTEIN THAT WAS CRYSTALLIZED WAS OBTAIN BY DIGESTING THE REMARK 999 SEQUENCE ABOVE WITH PROTEASE AND IS: REMARK 999 MKTSSLRKSVCSDLLTLFNSPHSALPSLLVSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAAL DBREF 6OD1 A 1 337 UNP V0SNG0 V0SNG0_ECOLX 1 337 DBREF 6OD1 B 17 130 UNP P39375 IRAD_ECOLI 17 130 SEQADV 6OD1 PRO A 58 UNP V0SNG0 ASP 58 ENGINEERED MUTATION SEQADV 6OD1 MET B 16 UNP P39375 INITIATING METHIONINE SEQRES 1 A 337 MET THR GLN PRO LEU VAL GLY LYS GLN ILE LEU ILE VAL SEQRES 2 A 337 GLU ASP GLU GLN VAL PHE ARG SER LEU LEU ASP SER TRP SEQRES 3 A 337 PHE SER SER LEU GLY ALA THR THR VAL LEU ALA ALA ASP SEQRES 4 A 337 GLY VAL ASP ALA LEU GLU LEU LEU GLY GLY PHE THR PRO SEQRES 5 A 337 ASP LEU MET ILE CYS PRO ILE ALA MET PRO ARG MET ASN SEQRES 6 A 337 GLY LEU LYS LEU LEU GLU HIS ILE ARG ASN ARG GLY ASP SEQRES 7 A 337 GLN THR PRO VAL LEU VAL ILE SER ALA THR GLU ASN MET SEQRES 8 A 337 ALA ASP ILE ALA LYS ALA LEU ARG LEU GLY VAL GLU ASP SEQRES 9 A 337 VAL LEU LEU LYS PRO VAL LYS ASP LEU ASN ARG LEU ARG SEQRES 10 A 337 GLU MET VAL PHE ALA CYS LEU TYR PRO SER MET PHE ASN SEQRES 11 A 337 SER ARG VAL GLU GLU GLU GLU ARG LEU PHE ARG ASP TRP SEQRES 12 A 337 ASP ALA MET VAL ASP ASN PRO ALA ALA ALA ALA LYS LEU SEQRES 13 A 337 LEU GLN GLU LEU GLN PRO PRO VAL GLN GLN VAL ILE SER SEQRES 14 A 337 HIS CYS ARG VAL ASN TYR ARG GLN LEU VAL ALA ALA ASP SEQRES 15 A 337 LYS PRO GLY LEU VAL LEU ASP ILE ALA ALA LEU SER GLU SEQRES 16 A 337 ASN ASP LEU ALA PHE TYR CYS LEU ASP VAL THR ARG ALA SEQRES 17 A 337 GLY HIS ASN GLY VAL LEU ALA ALA LEU LEU LEU ARG ALA SEQRES 18 A 337 LEU PHE ASN GLY LEU LEU GLN GLU GLN LEU ALA HIS GLN SEQRES 19 A 337 ASN GLN ARG LEU PRO GLU LEU GLY ALA LEU LEU LYS GLN SEQRES 20 A 337 VAL ASN HIS LEU LEU ARG GLN ALA ASN LEU PRO GLY GLN SEQRES 21 A 337 PHE PRO LEU LEU VAL GLY TYR TYR HIS ARG GLU LEU LYS SEQRES 22 A 337 ASN LEU ILE LEU VAL SER ALA GLY LEU ASN ALA THR LEU SEQRES 23 A 337 ASN THR GLY GLU HIS GLN VAL GLN ILE SER ASN GLY VAL SEQRES 24 A 337 PRO LEU GLY THR LEU GLY ASN ALA TYR LEU ASN GLN LEU SEQRES 25 A 337 SER GLN ARG CYS ASP ALA TRP GLN CYS GLN ILE TRP GLY SEQRES 26 A 337 THR GLY GLY ARG LEU ARG LEU MET LEU SER ALA GLU SEQRES 1 B 115 MET LYS THR SER SER LEU ARG LYS SER VAL CYS SER ASP SEQRES 2 B 115 LEU LEU THR LEU PHE ASN SER PRO HIS SER ALA LEU PRO SEQRES 3 B 115 SER LEU LEU VAL SER GLY MET PRO GLU TRP GLN VAL HIS SEQRES 4 B 115 ASN PRO SER ASP LYS HIS LEU GLN SER TRP TYR CYS ARG SEQRES 5 B 115 GLN LEU ARG SER ALA LEU LEU PHE HIS GLU PRO ARG ILE SEQRES 6 B 115 ALA ALA LEU GLN VAL ASN LEU LYS GLU ALA TYR CYS HIS SEQRES 7 B 115 THR LEU ALA ILE SER LEU GLU ILE MET LEU TYR HIS ASP SEQRES 8 B 115 ASP GLU PRO LEU THR PHE ASP LEU VAL TRP ASP ASN GLY SEQRES 9 B 115 GLY TRP ARG SER ALA THR LEU GLU ASN VAL SER FORMUL 3 HOH *109(H2 O) HELIX 1 AA1 GLU A 16 LEU A 30 1 15 HELIX 2 AA2 ASP A 39 GLY A 48 1 10 HELIX 3 AA3 ASN A 65 GLY A 77 1 13 HELIX 4 AA4 ASN A 90 GLY A 101 1 12 HELIX 5 AA5 ASP A 112 ASN A 114 5 3 HELIX 6 AA6 ARG A 115 ARG A 132 1 18 HELIX 7 AA7 ASP A 142 ASP A 148 1 7 HELIX 8 AA8 ASN A 149 LEU A 160 1 12 HELIX 9 AA9 GLY A 209 HIS A 233 1 25 HELIX 10 AB1 GLU A 240 ALA A 255 1 16 HELIX 11 AB2 SER B 20 SER B 35 1 16 HELIX 12 AB3 PRO B 41 SER B 46 1 6 HELIX 13 AB4 SER B 46 ASN B 55 1 10 HELIX 14 AB5 ASP B 58 GLU B 77 1 20 SHEET 1 AA1 5 THR A 33 ALA A 37 0 SHEET 2 AA1 5 GLN A 9 VAL A 13 1 N ILE A 12 O VAL A 35 SHEET 3 AA1 5 LEU A 54 CYS A 57 1 O ILE A 56 N VAL A 13 SHEET 4 AA1 5 VAL A 82 SER A 86 1 O LEU A 83 N MET A 55 SHEET 5 AA1 5 ASP A 104 LEU A 107 1 O LEU A 106 N VAL A 84 SHEET 1 AA2 6 GLN A 165 ILE A 168 0 SHEET 2 AA2 6 CYS A 171 GLN A 177 -1 O VAL A 173 N GLN A 166 SHEET 3 AA2 6 GLY A 328 ALA A 336 -1 O MET A 333 N ASN A 174 SHEET 4 AA2 6 TRP A 319 GLY A 325 -1 N CYS A 321 O LEU A 332 SHEET 5 AA2 6 ASN A 283 ASN A 287 -1 N ASN A 287 O GLN A 320 SHEET 6 AA2 6 GLN A 292 ILE A 295 -1 O VAL A 293 N LEU A 286 SHEET 1 AA3 5 LEU A 186 ALA A 192 0 SHEET 2 AA3 5 ASP A 197 ASP A 204 -1 O ALA A 199 N ALA A 191 SHEET 3 AA3 5 LEU A 263 HIS A 269 -1 O GLY A 266 N PHE A 200 SHEET 4 AA3 5 ASN A 274 ALA A 280 -1 O ALA A 280 N LEU A 263 SHEET 5 AA3 5 LEU A 312 ARG A 315 -1 O LEU A 312 N LEU A 277 SHEET 1 AA4 4 ILE B 80 LEU B 87 0 SHEET 2 AA4 4 ALA B 96 LEU B 103 -1 O MET B 102 N ALA B 81 SHEET 3 AA4 4 LEU B 110 TRP B 116 -1 O LEU B 110 N ILE B 101 SHEET 4 AA4 4 TRP B 121 SER B 123 -1 O ARG B 122 N VAL B 115 CRYST1 55.938 55.938 300.298 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017877 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003330 0.00000